**WARNING**: some parts of the repository are *NOT* open-source. these are

copyright their respective owners.

the open-source parts of the repository are licensed as described in _license/.

**IMPORTANT**: when redistributing, it recommended to include _license/, so that

the open-source proof is included along with the license text.

the repository as a whole, *EXCEPT* the non-open-source parts, is collectively

licensed under the following terms (GPL2+):

-----

BIEN 3

Copyright (C) 2014  The Regents of the University of California, The Arizona

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                    GNU GENERAL PUBLIC LICENSE

                       Version 2, June 1991

 Copyright (C) 1989, 1991 Free Software Foundation, Inc.,

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                            Preamble

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                    GNU GENERAL PUBLIC LICENSE

   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION

  0. This License applies to any program or other work which contains

a notice placed by the copyright holder saying it may be distributed

under the terms of this General Public License.  The "Program", below,

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source code as you receive it, in any medium, provided that you

conspicuously and appropriately publish on each copy an appropriate

copyright notice and disclaimer of warranty; keep intact all the

notices that refer to this License and to the absence of any warranty;

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You may charge a fee for the physical act of transferring a copy, and

you may at your option offer warranty protection in exchange for a fee.

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These requirements apply to the modified work as a whole.  If

identifiable sections of that work are not derived from the Program,

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This section is intended to make thoroughly clear what is believed to

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of the General Public License from time to time.  Such new versions will

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                            NO WARRANTY

  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY

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OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES

PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED

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WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR

REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,

INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING

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TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY

YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER

PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE

POSSIBILITY OF SUCH DAMAGES.

                     END OF TERMS AND CONDITIONS

-----

Copyright (c) 2013, The Regents of the University of California

All rights reserved.

Redistribution and use in source and binary forms, with or without modification,

are permitted provided that the following conditions are met:

1.	Redistributions of source code must retain the above copyright notice, this

	list of conditions and the following disclaimer.

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	this list of conditions and the following disclaimer in the documentation

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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED

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SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

-----

Copyright 2013. The Arizona Board of Regents on behalf of The University of

Arizona. All rights reserved.

Program developed by: iPlant Collaborative as a collaboration between

participants at BIO5 at The University of Arizona (the primary hosting

institution), Cold Spring Harbor Laboratory, The University of Texas at Austin,

The University of North Carolina at Wilmington and individual contributors. Find

out more at http://www.iplantcollaborative.org/.

Permission is granted to use, copy, create derivative works, and redistribute

this software, and any such derivative works, providing that the following

conditions are met:

1.	No fee is charged for all noncommercial education and research purposes;

2.	Redistributions of source code must retain the above copyright notice, this

	list of conditions and the following disclaimer;

3.	Redistributions in binary form must reproduce the above copyright notice,

	this list of conditions and the following disclaimer in the documentation

	and/or other materials provided with the distribution;

4.	Neither the name of the iPlant Collaborative, BIO5, The University of

	Arizona, The University of Texas at Austin, Cold Spring Harbor Laboratory,

	nor the names of other contributors may be used to endorse or promote

	products derived from this software without specific prior written

	permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED

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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR

ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES

(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;

LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON

ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT

(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS

SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

-----

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