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Name Size Revision Age Author Comment
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
.map.csv.last_cleanup 0 Bytes 6660 almost 12 years Aaron Marcuse-Kubitza input.Makefile: SVN: add: Add a Source table to...
VegBIEN.csv 42 Bytes 10174 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/input.Makefile: %/VegBIEN.csv: f...
data.csv 2 Bytes 10166 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/*/Source/data.csv for new-style ...
header.csv 8 Bytes 10163 over 11 years Aaron Marcuse-Kubitza inputs/*/Source/ for new-style datasources: use...
map.csv 79 Bytes 10199 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/*/Source/map.csv: added missing ...
run 63 Bytes 10163 over 11 years Aaron Marcuse-Kubitza inputs/*/Source/ for new-style datasources: use...
test.xml.ref 555 Bytes 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
unmapped_terms.csv 10 Bytes 10208 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/*/Source/map.csv: added missing ...
  • svn:ignore: *

Latest revisions

# Date Author Comment
11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

10208 07/10/2013 02:27 AM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/map.csv: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table. the staging table column renaming is now used by all Source tables.

10199 07/09/2013 04:44 PM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/map.csv: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table. the staging table column renaming is now used by all Source tables.

10174 07/06/2013 03:55 PM Aaron Marcuse-Kubitza

bugfix: inputs/input.Makefile: %/VegBIEN.csv: for new-style datasources, use a symlink to mappings/VegCore-VegBIEN.csv directly instead of prefiltering VegCore-VegBIEN.csv to include only the columns in map.csv. prefiltering used to be performed as part of mapping the map.csv VegCore output terms to VegBIEN using bin/join, but is no longer needed because the staging table columns are now VegCore terms. instead, the full VegCore-VegBIEN.csv is needed so that derived columns added in stage I or II validations are detected by bin/map (rather than just the original source columns in map.csv).

10166 07/06/2013 11:29 AM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/data.csv for new-style datasources: need to include a blank row (plus a blank header) so that the metadata values are imported at least once instead of zero times, now that there is an installed staging table that will be iterated over. the blank row did not used to be necessary, because db_xml.put_table() has a special case for metadata-only tables with no installed table, which avoids iterating over the table's rows.

10163 07/03/2013 10:20 PM Aaron Marcuse-Kubitza

inputs/*/Source/ for new-style datasources: use an actual staging table instead of a metadata-only table, so that metadata values can be stored in the staging table instead of the map.csv (as will be required by new-style import)

10098 06/27/2013 09:54 PM Aaron Marcuse-Kubitza

inputs/.NCBI/: added new-style import runscripts, which renamed the staging table columns to VegCore

8801 05/02/2013 08:53 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: SVN: add, %/add: */logs: also svn:ignore *.gz, used for compressed log files

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