Revision 1223
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/NYBG/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 62 | 62 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
| 63 | 63 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 64 | 64 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 65 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 66 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 65 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 66 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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|
| 67 | 67 |
fieldNotes,/description,, |
| 68 | 68 |
Notes,/description/_merge/1,, |
| 69 | 69 |
PlantFungusDescription,"/description/_merge/2/_label[label=""plant fungus""]/value",, |
| inputs/SALVIAS/test/VegBIEN.organisms.xml.ref | ||
|---|---|---|
| 22 | 22 |
</plantobservation> |
| 23 | 23 |
</plantobservation_id> |
| 24 | 24 |
<count>1</count> |
| 25 |
<definedvalue fkey="tableRecord_ID">
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|
| 25 |
<definedvalue fkey="tablerecord_id">
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|
| 26 | 26 |
<userdefined_id> |
| 27 | 27 |
<userdefined> |
| 28 | 28 |
<tablename>aggregateoccurrence</tablename> |
| ... | ... | |
| 33 | 33 |
</definedvalue> |
| 34 | 34 |
<growthform>tree</growthform> |
| 35 | 35 |
</aggregateoccurrence> |
| 36 |
<definedvalue fkey="tableRecord_ID">
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|
| 36 |
<definedvalue fkey="tablerecord_id">
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|
| 37 | 37 |
<userdefined_id> |
| 38 | 38 |
<userdefined> |
| 39 | 39 |
<tablename>taxonoccurrence</tablename> |
| ... | ... | |
| 161 | 161 |
</plantobservation> |
| 162 | 162 |
</plantobservation_id> |
| 163 | 163 |
<count>1</count> |
| 164 |
<definedvalue fkey="tableRecord_ID">
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| 164 |
<definedvalue fkey="tablerecord_id">
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|
| 165 | 165 |
<userdefined_id> |
| 166 | 166 |
<userdefined> |
| 167 | 167 |
<tablename>aggregateoccurrence</tablename> |
| ... | ... | |
| 172 | 172 |
</definedvalue> |
| 173 | 173 |
<growthform>tree</growthform> |
| 174 | 174 |
</aggregateoccurrence> |
| 175 |
<definedvalue fkey="tableRecord_ID">
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|
| 175 |
<definedvalue fkey="tablerecord_id">
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|
| 176 | 176 |
<userdefined_id> |
| 177 | 177 |
<userdefined> |
| 178 | 178 |
<tablename>taxonoccurrence</tablename> |
| inputs/SALVIAS/maps/VegBIEN.stems.csv | ||
|---|---|---|
| 2 | 2 |
PlotObsID,/*_id/plantobservation/authorplantcode, |
| 3 | 3 |
NoInd,/*_id/plantobservation/stemcount, |
| 4 | 4 |
basal_diam,/basaldiameter, |
| 5 |
stem_canopy_form,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",
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| 6 |
stem_canopy_position,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",
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| 7 |
gentry_dbh,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue",
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| 8 |
stem_liana_infestation,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
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| 9 |
stem_notes,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
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| 5 |
stem_canopy_form,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
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| 6 |
stem_canopy_position,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
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| 7 |
gentry_dbh,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
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| 8 |
stem_liana_infestation,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
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| 9 |
stem_notes,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
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| 10 | 10 |
stem_dbh,/diameterbreastheight, |
| 11 | 11 |
stem_height_m,/height, |
| 12 | 12 |
stem_height_first_branch_m,/heightfirstbranch, |
| inputs/SALVIAS/maps/VegBIEN.plots.csv | ||
|---|---|---|
| 19 | 19 |
date_finish,/obsenddate/_*/date, |
| 20 | 20 |
date_start,/obsstartdate/_*/date, |
| 21 | 21 |
Precip,/precipitation, |
| 22 |
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
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| 23 |
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
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| 24 |
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
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| 25 |
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
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| 26 |
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
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| 27 |
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
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| 28 |
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
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| 29 |
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
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| 30 |
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
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| 31 |
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
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| 32 |
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
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| 22 |
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tablerecord_id]/definedvalue",
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| 23 |
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tablerecord_id]/definedvalue",
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| 24 |
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tablerecord_id]/definedvalue",
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| 25 |
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tablerecord_id]/definedvalue",
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| 26 |
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tablerecord_id]/definedvalue",
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| 27 |
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tablerecord_id]/definedvalue",
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| 28 |
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tablerecord_id]/definedvalue",
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| 29 |
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tablerecord_id]/definedvalue",
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| 30 |
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tablerecord_id]/definedvalue",
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| 31 |
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tablerecord_id]/definedvalue",
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| 32 |
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tablerecord_id]/definedvalue",
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| 33 | 33 |
clay_percent,/soilobs:[soilhorizon=unknown]/soilclay, |
| 34 | 34 |
organic_percent,/soilobs:[soilhorizon=unknown]/soilorganic, |
| 35 | 35 |
pH,/soilobs:[soilhorizon=unknown]/soilph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss." |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 5 | 5 |
Ind,/aggregateoccurrence/*_id/plantobservation/authorplantcode,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
| 6 | 6 |
height_m,/aggregateoccurrence/*_id/plantobservation/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 7 | 7 |
PlotObsID,/aggregateoccurrence/*_id/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 8 |
canopy_form,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
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| 9 |
canopy_position,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
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| 10 |
liana_infestation,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
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| 11 |
Notes,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
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| 8 |
canopy_form,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
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| 9 |
canopy_position,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
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| 10 |
liana_infestation,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
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| 11 |
Notes,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
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| 12 | 12 |
temp_dbh,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight, |
| 13 | 13 |
ht_first_branch_m,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 14 | 14 |
tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2" |
| ... | ... | |
| 17 | 17 |
y_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 18 | 18 |
NoInd,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
| 19 | 19 |
cover_percent,/aggregateoccurrence/cover, |
| 20 |
census_no,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
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| 20 |
census_no,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
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| 21 | 21 |
Habit,"/aggregateoccurrence/growthform/_map:[T=tree,H=hemiepiphyte,L=liana,E=epiphyte,S=shrub,Hb=herb]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
| 22 | 22 |
intercept_cm,/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 23 | 23 |
coll_firstname,/aggregateoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 24 | 24 |
coll_lastname,/aggregateoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 25 |
DetType,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
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| 25 |
DetType,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tablerecord_id]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
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| 26 | 26 |
coll_number,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string |
| 27 | 27 |
SourceVoucher,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 28 | 28 |
census_date,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate/_*/date, |
| inputs/NYBG-CSV/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 62 | 62 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
| 63 | 63 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 64 | 64 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 65 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 66 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 65 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 66 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
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| 67 | 67 |
fieldNotes,/description,, |
| 68 | 68 |
Notes,/description/_merge/1,, |
| 69 | 69 |
PlantFungusDescription,"/description/_merge/2/_label[label=""plant fungus""]/value",, |
| inputs/SALVIAS-CSV/test/VegBIEN.organisms.xml.ref | ||
|---|---|---|
| 34 | 34 |
</plantobservation> |
| 35 | 35 |
</plantobservation_id> |
| 36 | 36 |
<count>1</count> |
| 37 |
<definedvalue fkey="tableRecord_ID">
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| 37 |
<definedvalue fkey="tablerecord_id">
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| 38 | 38 |
<userdefined_id> |
| 39 | 39 |
<userdefined> |
| 40 | 40 |
<tablename>aggregateoccurrence</tablename> |
| ... | ... | |
| 162 | 162 |
</plantobservation> |
| 163 | 163 |
</plantobservation_id> |
| 164 | 164 |
<count>1</count> |
| 165 |
<definedvalue fkey="tableRecord_ID">
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| 165 |
<definedvalue fkey="tablerecord_id">
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| 166 | 166 |
<userdefined_id> |
| 167 | 167 |
<userdefined> |
| 168 | 168 |
<tablename>aggregateoccurrence</tablename> |
| inputs/SALVIAS-CSV/maps/VegBIEN.plots.csv | ||
|---|---|---|
| 19 | 19 |
date_finish,/obsenddate/_*/date, |
| 20 | 20 |
date_start,/obsstartdate/_*/date, |
| 21 | 21 |
precip_mm,/precipitation, |
| 22 |
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
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| 23 |
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
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| 24 |
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
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| 25 |
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
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| 26 |
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 27 |
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 28 |
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 29 |
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 30 |
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 31 |
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 32 |
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 22 |
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 23 |
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 24 |
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 25 |
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 26 |
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 27 |
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 28 |
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 29 |
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 30 |
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 31 |
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 32 |
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 33 | 33 |
clay_percent,/soilobs:[soilhorizon=unknown]/soilclay, |
| 34 | 34 |
organic_percent,/soilobs:[soilhorizon=unknown]/soilorganic, |
| 35 | 35 |
pH,/soilobs:[soilhorizon=unknown]/soilph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss." |
| inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 8 | 8 |
stem_height_m,/aggregateoccurrence/*_id/plantobservation/overallheight,"Brad: Same as for height, but applies to individuals stems, not trees. Rare." |
| 9 | 9 |
OBSERVATION_ID,/aggregateoccurrence/*_id/plantobservation/sourceaccessioncode,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 10 | 10 |
basal_diam,/aggregateoccurrence/*_id/plantobservation/stemobservation/basaldiameter, |
| 11 |
stem_canopy_form,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
|
|
| 12 |
stem_canopy_position,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
|
|
| 13 |
stem_liana_infestation,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
|
|
| 14 |
notes,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 11 |
stem_canopy_form,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
|
|
| 12 |
stem_canopy_position,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
|
|
| 13 |
stem_liana_infestation,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",Brad: Should also be userDefined for VegBank.
|
|
| 14 |
notes,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 15 | 15 |
stem_dbh,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight, |
| 16 | 16 |
ht_first_branch_m,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob |
| 17 | 17 |
stem_height_first_branch_m,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,"Brad: Should also be userDefined for VegBank. Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare." |
| ... | ... | |
| 23 | 23 |
y_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,Brad: See comment above for x_position |
| 24 | 24 |
no_of_individuals,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
| 25 | 25 |
cover_percent,/aggregateoccurrence/cover, |
| 26 |
census_no,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
|
|
| 26 |
census_no,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
|
|
| 27 | 27 |
habit,"/aggregateoccurrence/growthform/_map:[T=tree,H=hemiepiphyte,L=liana,E=epiphyte,S=shrub,Hb=herb]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
| 28 | 28 |
intercept_cm,/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 29 | 29 |
coll_firstname,/aggregateoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 30 | 30 |
coll_lastname,/aggregateoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 31 |
det_type,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
| 31 |
det_type,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tablerecord_id]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
|
|
| 32 | 32 |
coll_number,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/1,Brad: Incorrect. Map instead as for voucher_string |
| 33 | 33 |
voucher_string,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 34 | 34 |
specific_authority,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
| mappings/VegX-VegBIEN.plots.csv | ||
|---|---|---|
| 25 | 25 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 26 | 26 |
/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 27 | 27 |
/simpleUserdefined[name=precipMm]/value,/precipitation, |
| 28 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 29 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 30 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 31 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 32 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 33 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 34 |
->/*s/abioticObservation[*ID]/magnesium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 35 |
->/*s/abioticObservation[*ID]/nitrogen,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 36 |
->/*s/abioticObservation[*ID]/phosphorus,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 37 |
->/*s/abioticObservation[*ID]/pottasium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 38 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 28 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 29 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 30 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 31 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 32 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 33 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 34 |
->/*s/abioticObservation[*ID]/magnesium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 35 |
->/*s/abioticObservation[*ID]/nitrogen,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 36 |
->/*s/abioticObservation[*ID]/phosphorus,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 37 |
->/*s/abioticObservation[*ID]/pottasium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 38 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 39 | 39 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=clayPercent]/value,/soilobs:[soilhorizon=unknown]/soilclay, |
| 40 | 40 |
->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value,/soilobs:[soilhorizon=unknown]/soilorganic, |
| 41 | 41 |
->/*s/abioticObservation[*ID]/ph,/soilobs:[soilhorizon=unknown]/soilph, |
| mappings/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 25 | 25 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation/partyWithRole/*ID->/parties/party/organizationName,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| 26 | 26 |
/*ID->/*s/plotObservation/simpleUserdefined[name=parent]/value->/*s/plotObservation:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/simpleUserdefined[name=sourceaccessioncode]/value,/*_id/locationevent/parent_id/locationevent:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode, |
| 27 | 27 |
/*ID->/*s/plotObservation/simpleUserdefined[name=precipMm]/value,/*_id/locationevent/precipitation, |
| 28 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 29 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 30 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 31 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 32 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 33 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 34 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 35 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 36 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 37 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 38 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 28 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 29 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 30 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 31 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 32 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 33 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 34 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 35 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 36 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 37 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 38 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 39 | 39 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=clayPercent]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilclay, |
| 40 | 40 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilorganic, |
| 41 | 41 |
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/ph,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilph, |
| ... | ... | |
| 56 | 56 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=count]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/*_id/plantobservation/stemcount, |
| 57 | 57 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/basaldiameter, |
| 58 | 58 |
/diameterBaseDistance[baseDistance/value=0]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/basaldiameter, |
| 59 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 60 |
/simpleUserdefined[name=canopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 61 |
/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 62 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 63 |
/simpleUserdefined[name=canopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 64 |
/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 65 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 66 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 67 |
/simpleUserdefined[name=lianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 68 |
/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 69 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 70 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 59 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 60 |
/simpleUserdefined[name=canopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 61 |
/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 62 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 63 |
/simpleUserdefined[name=canopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 64 |
/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 65 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 66 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 67 |
/simpleUserdefined[name=lianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 68 |
/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 69 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 70 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 71 | 71 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight, |
| 72 | 72 |
/diameterBaseDistance[baseDistance/value=1.37]/diameter,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight, |
| 73 | 73 |
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/height, |
| ... | ... | |
| 82 | 82 |
/simpleUserdefined[name=yPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition, |
| 83 | 83 |
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count, |
| 84 | 84 |
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover, |
| 85 |
/simpleUserdefined[name=censusNo]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 85 |
/simpleUserdefined[name=censusNo]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 86 | 86 |
/simpleUserdefined[name=growthForm]/value,/aggregateoccurrence/growthform, |
| 87 | 87 |
/simpleUserdefined[name=interceptCm]/value,/aggregateoccurrence/linecover, |
| 88 | 88 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",/aggregateoccurrence/verbatimcollectorname/_name/first, |
| 89 | 89 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName",/aggregateoccurrence/verbatimcollectorname/_name/last, |
| 90 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 90 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 91 | 91 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept:[partyWithRole/*ID->/parties/party/organizationName=$/_ignore/inLabel]/voucher,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc, |
| 92 | 92 |
/simpleUserdefined[name=collectionDate]/value,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate, |
| 93 | 93 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1, |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 59 | 59 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
| 60 | 60 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 61 | 61 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 62 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
|
| 63 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
|
| 62 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
|
| 63 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
|
| 64 | 64 |
Notes,/description,, |
| 65 | 65 |
fieldNotes,/description,, |
| 66 | 66 |
Collector,/verbatimcollectorname,,23 |
| mappings/VegX-VegBIEN.stems.csv | ||
|---|---|---|
| 2 | 2 |
/relatedItem[relationshipType=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,/*_id/plantobservation/authorplantcode, |
| 3 | 3 |
/simpleUserdefined[name=count]/value,/*_id/plantobservation/stemcount, |
| 4 | 4 |
/diameterBaseDistance[baseDistance/value=0]/diameter,/basaldiameter, |
| 5 |
/simpleUserdefined[name=stemCanopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 6 |
/simpleUserdefined[name=stemCanopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 7 |
/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 8 |
/simpleUserdefined[name=stemLianaInfestation]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 9 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
|
|
| 5 |
/simpleUserdefined[name=stemCanopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 6 |
/simpleUserdefined[name=stemCanopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 7 |
/diameterBaseDistance[baseDistance[*ID/*s/attribute/quantitative/*ID/*s/method(/name=Gentry)]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 8 |
/simpleUserdefined[name=stemLianaInfestation]/value,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 9 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 10 | 10 |
/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/diameterbreastheight, |
| 11 | 11 |
/simpleUserdefined[name=stemHeightM]/value,/height, |
| 12 | 12 |
/simpleUserdefined[name=stemHeightFirstBranchM]/value,/heightfirstbranch, |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 29 | 29 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143 |
| 30 | 30 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
| 31 | 31 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 32 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
|
| 32 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
|
|
| 33 | 33 |
fieldNotes,/description,, |
| 34 | 34 |
recordedBy,/verbatimcollectorname,,23 |
| 35 | 35 |
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
Also available in: Unified diff
VegBIEN mappings: Changed tableRecord_ID to tablerecord_id to match PostgreSQL field name