Project

General

Profile

« Previous | Next » 

Revision 1237

Added by Aaron Marcuse-Kubitza almost 13 years ago

VegX-VegBIEN mapping: Map stemtags using [] instead of :[] for attrs that are really keys

View differences:

inputs/SALVIAS/maps/VegBIEN.stems.csv
10 10 
stem_dbh,/diameterbreastheight,
11 11 
stem_height_m,/height,
12 12 
stem_height_first_branch_m,/heightfirstbranch,
13 
stem_tag1,"/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
14 
stem_tag2,"/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)",
13 
stem_tag1,"/stemtag[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
14 
stem_tag2,/stemtag[iscurrent=true]:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false](/tag),
15 15 
origrecord_id_stems,,
16 16 
stem_id,,
17 17 
tmp_del,,
inputs/SALVIAS/maps/VegBIEN.organisms.csv
14 14 
Notes,"/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",
15 15 
temp_dbh,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight,
16 16 
ht_first_branch_m,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
17 
tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
18 
tag2,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
17 
tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true](/tag)","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
18 
tag2,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false](/tag),"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
19 19 
x_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
20 20 
y_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,Brad: See comment above for x_position
21 21 
NoInd,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
inputs/SALVIAS-CSV/test/VegBIEN.organisms.xml.ref
32 32 
                    <stemobservation>
33 33 
                        <diameterbreastheight>662</diameterbreastheight>
34 34 
                        <stemtag>
35 
                            <iscurrent>false</iscurrent>
35 36 
                            <tag>7</tag>
36 
                            <iscurrent>false</iscurrent>
37 37 
                        </stemtag>
38 38 
                        <stemtag>
39 
                            <iscurrent>true</iscurrent>
39 40 
                            <tag>8</tag>
40 
                            <iscurrent>true</iscurrent>
41 41 
                        </stemtag>
42 42 
                    </stemobservation>
43 43 
                </plantobservation>
......
165 165 
                    <stemobservation>
166 166 
                        <diameterbreastheight>215</diameterbreastheight>
167 167 
                        <stemtag>
168 
                            <iscurrent>false</iscurrent>
168 169 
                            <tag>84</tag>
169 
                            <iscurrent>false</iscurrent>
170 170 
                        </stemtag>
171 171 
                        <stemtag>
172 
                            <iscurrent>true</iscurrent>
172 173 
                            <tag>91</tag>
173 
                            <iscurrent>true</iscurrent>
174 174 
                        </stemtag>
175 175 
                    </stemobservation>
176 176 
                </plantobservation>
inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv
18 18 
stem_dbh,/aggregateoccurrence/*_id/plantobservation/stemobservation/diameterbreastheight,
19 19 
ht_first_branch_m,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
20 20 
stem_height_first_branch_m,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,"Brad: Should also be userDefined for VegBank. Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
21 
stem_tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)","Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems.; Quotes sort it before tag2"
22 
stem_tag2,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Brad: see above; Quotes sort it before tag2
23 
tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
24 
tag2,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)","Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
21 
stem_tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true](/tag)","Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems.; Quotes sort it before tag2"
22 
stem_tag2,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true](/tag)",Brad: see above; Quotes sort it before tag2
23 
tag1,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true](/tag)","Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once.; Quotes sort it before tag2"
24 
tag2,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false](/tag),"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
25 25 
x_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
26 26 
y_position,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,Brad: See comment above for x_position
27 27 
no_of_individuals,/aggregateoccurrence/count,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
mappings/VegX-VegBIEN.organisms.csv
77 77 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
78 78 
/simpleUserdefined[name=htFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
79 79 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/heightfirstbranch,
80 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
81 
/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
82 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)",
83 
/simpleUserdefined[name=tag2]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)",
80 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
81 
/*ID->/*s/individualOrganism/identificationLabel,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
82 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false](/tag),
83 
/simpleUserdefined[name=tag2]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag[iscurrent=true]:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false](/tag),
84 84 
/simpleUserdefined[name=xPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition,
85 85 
/simpleUserdefined[name=yPosition]/value,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,
86 86 
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count,
mappings/for_review/VegX-VegBIEN.organisms.csv
77 77 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,//stemobservation/heightfirstbranch,
78 78 
/simpleUserdefined[name=htFirstBranchM]/value,//stemobservation/heightfirstbranch,
79 79 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,//stemobservation/heightfirstbranch,
80 
//individualOrganism/identificationLabel,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag(/tag),Quotes sort it before tag2
81 
//individualOrganism/identificationLabel,/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag(/tag),Quotes sort it before tag2
82 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[2=true]/1=false,iscurrent=true](/tag)",
83 
/simpleUserdefined[name=tag2]/value,"/aggregateoccurrence/*_id/plantobservation/stemobservation/stemtag:[../stemtag[2=true]/1=false,iscurrent=true](/tag)",
80 
//individualOrganism/identificationLabel,"//stemobservation/stemtag[""""/2=true](/tag)",Quotes sort it before tag2
81 
//individualOrganism/identificationLabel,"//stemobservation/stemtag[""""/2=true](/tag)",Quotes sort it before tag2
82 
//*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=tag2]/value,//stemobservation/stemtag[iscurrent=true]:[../stemtag[2=true]/1=false](/tag),
83 
/simpleUserdefined[name=tag2]/value,//stemobservation/stemtag[iscurrent=true]:[../stemtag[2=true]/1=false](/tag),
84 84 
/simpleUserdefined[name=xPosition]/value,//stemobservation/xposition,
85 85 
/simpleUserdefined[name=yPosition]/value,//stemobservation/yposition,
86 86 
/simpleUserdefined[name=count]/value,//aggregateoccurrence/count,
mappings/for_review/VegX-VegBIEN.stems.csv
10 10 
/diameterBaseDistance[baseDistance[]/value=1.37]/diameter,/diameterbreastheight,
11 11 
/simpleUserdefined[name=stemHeightM]/value,/height,
12 12 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,/heightfirstbranch,
13 
//individualOrganism/identificationLabel,/stemtag(/tag),Quotes sort it before tag2
14 
/simpleUserdefined[name=tag2]/value,"/stemtag:[../stemtag[2=true]/1=false,iscurrent=true](/tag)",
13 
//individualOrganism/identificationLabel,"/stemtag[""""/2=true](/tag)",Quotes sort it before tag2
14 
/simpleUserdefined[name=tag2]/value,/stemtag[iscurrent=true]:[../stemtag[2=true]/1=false](/tag),
mappings/VegX-VegBIEN.stems.csv
10 10 
/diameterBaseDistance[baseDistance[!attributeID]/value=1.37]/diameter,/diameterbreastheight,
11 11 
/simpleUserdefined[name=stemHeightM]/value,/height,
12 12 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,/heightfirstbranch,
13 
/*ID->/*s/individualOrganism/identificationLabel,"/stemtag:[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
14 
/simpleUserdefined[name=tag2]/value,"/stemtag:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false,iscurrent=true](/tag)",
13 
/*ID->/*s/individualOrganism/identificationLabel,"/stemtag[""""/iscurrent/_alt/2=true](/tag)",Quotes sort it before tag2
14 
/simpleUserdefined[name=tag2]/value,/stemtag[iscurrent=true]:[../stemtag[iscurrent/_alt/2=true]/iscurrent/_alt/1=false](/tag),

Also available in: Unified diff