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Name Size Revision Age Author Comment
  Source 11396 over 10 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  Specimen 11924 over 10 years Aaron Marcuse-Kubitza fix: inputs/TEX/Specimen*/map.csv, postprocess....
  Specimen2 11924 over 10 years Aaron Marcuse-Kubitza fix: inputs/TEX/Specimen*/map.csv, postprocess....
  logs 8801 about 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  verify 12018 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
Makefile 27 Bytes 10177 almost 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
import_order.txt 26 Bytes 10109 about 11 years Aaron Marcuse-Kubitza empty inputs/*/import_order.txt: added subdirs ...
run 87 Bytes 10625 almost 11 years Aaron Marcuse-Kubitza inputs/TEX/: switched to new-style import, usin...
table.run 81 Bytes 10179 almost 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
  • svn:ignore: *

Latest revisions

# Date Author Comment
12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11924 12/20/2013 12:28 AM Aaron Marcuse-Kubitza

fix: inputs/TEX/Specimen*/map.csv, postprocess.sql: habitat: also placed in occurrenceRemarks so that this field gets parsed for growth form information, as requested by Brad (wiki.vegpath.org/TEX_validation#2013-2-26)

11923 12/19/2013 11:49 PM Aaron Marcuse-Kubitza

fix: inputs/TEX/Specimen*/map.csv: mapped constant values for specimenHolderInstitutions, country. these have to be added with `rm=1 ./inputs/TEX/Specimen.../run postprocess`.

11922 12/19/2013 11:42 PM Aaron Marcuse-Kubitza

bugfix: inputs/TEX/Specimen2/map.csv: mapped BARCODE to accessionNumber so that we have a unique ID for each row

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

10625 08/07/2013 04:51 PM Aaron Marcuse-Kubitza

inputs/TEX/: switched to new-style import, using the steps at http://wiki.vegpath.org/Adding_new-style_import_to_a_datasource

10624 08/07/2013 04:44 PM Aaron Marcuse-Kubitza

inputs/TEX/Specimen2/: translated new multi-column filters to postprocessing derived columns, using the steps at http://wiki.vegpath.org/Adding_new-style_import_to_a_datasource#Translating-filters-to-postprocessing-derived-columns

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