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root/mappings/for_review/DwC2-VegBIEN.specimens.csv @ 1262

1 1258 aaronmk 
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2 1120 aaronmk 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
3 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
4 
county,//*_id/namedplace[placesystem=county]/placename,,66
5 1172 aaronmk 
coordinatePrecision,//location/locationdetermination[]/coordsaccuracy/_noCV/value,,89
6 1120 aaronmk 
footprintWKT,//location/locationdetermination[]/footprintgeometry_dwc,,91
7 1207 aaronmk 
locality,//location/locationnarrative/_merge/1,,68
8 
verbatimLocality,//location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
9 
habitat,"//location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
10 1120 aaronmk 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
11 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
12 
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/1/_nullIf/value",,85
13 
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/latitude,centerlatitude}/_alt/2/_nullIf/value",,81
14 
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/1/_nullIf/value",,86
15 
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[]/longitude,centerlongitude}/_alt/2/_nullIf/value",,82
16 
eventDate,//locationevent/obsstartdate,,44
17 
maximumDepthInMeters,//waterdepth/max,,75
18 
minimumDepthInMeters,//waterdepth/min,,74
19 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
20 
dateIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate",,120
21 
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
22 
scientificName,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
23 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Class]/*_id/plantconcept/*_id/*/plantname",,144
24 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Family]/*_id/plantconcept/*_id/*/plantname",,146
25 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Genus]/*_id/plantconcept/*_id/*/plantname",,147
26 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
27 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Order]/*_id/plantconcept/*_id/*/plantname",,145
28 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Species]/*_id/plantconcept/*_id/*/plantname",,149
29 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
30 
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
31 
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
32 1222 aaronmk 
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
33 1120 aaronmk 
fieldNotes,/description,,
34 1203 aaronmk 
recordedBy,/verbatimcollectorname,,23
35 1120 aaronmk 
catalogNumber,/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
36 
recordNumber,/collectionnumber/_alt/1,,22
37 
collectionID,/collectionnumber/_alt/2,,9
38 
fieldNumber,/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
39 1258 aaronmk 
institutionID,//party/organizationname/_alt/1,,8
40 1120 aaronmk 
occurrenceID,/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
41 
acceptedNameUsage,,,135
42 
acceptedNameUsageID,,,128
43 
associatedMedia,,,36
44 
associatedOccurrences,,,38
45 
associatedReferences,,,37
46 
associatedSequences,,,39
47 
associatedTaxa,,,40
48 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
49 
bed,,,117
50 
behavior,,,29
51 
continent,,Brad: OMIT,59
52 
coordinateUncertaintyInMeters,,,88
53 
countryCode,,,64
54 
dataGeneralizations,,,17
55 
datasetID,,,10
56 
datasetName,,,13
57 
day,,Brad: OMIT,50
58 
dcterms:accessRights,,,5
59 
dcterms:bibliographicCitation,,,6
60 
dcterms:language,,,2
61 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
62 
dcterms:references,,,7
63 
dcterms:rights,,,3
64 
dcterms:rightsHolder,,,4
65 
dcterms:type,,,0
66 
disposition,,,33
67 
dynamicProperties,,,18
68 
earliestAgeOrLowestStage,,,109
69 
earliestEonOrLowestEonothem,,,101
70 
earliestEpochOrLowestSeries,,,107
71 
earliestEraOrLowestErathem,,,103
72 
earliestPeriodOrLowestSystem,,,105
73 
endDayOfYear,,,47
74 
establishmentMeans,,,30
75 
eventID,,,41
76 
eventRemarks,,,55
77 
eventTime,,Brad: OMIT,45
78 
footprintSRS,,,92
79 
footprintSpatialFit,,,93
80 
formation,,,115
81 
geodeticDatum,,,87
82 
geologicalContextID,,,100
83 
georeferenceProtocol,,,96
84 
georeferenceRemarks,,,99
85 
georeferenceSources,,,97
86 
georeferenceVerificationStatus,,,98
87 
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
88 
georeferencedDate,,,95
89 
group,,,114
90 
higherClassification,,,141
91 
higherGeography,,,58
92 
higherGeographyID,,,57
93 
highestBiostratigraphicZone,,,112
94 
identificationID,,,118
95 
identificationQualifier,,,124
96 
identificationReferences,,,121
97 
identificationRemarks,,,123
98 
identificationVerificationStatus,,,122
99 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
100 
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
101 
informationWithheld,,,16
102 1258 aaronmk 
institutionCode,,,
103 1120 aaronmk 
island,,,62
104 
islandGroup,,,61
105 
latestAgeOrHighestStage,,,110
106 
latestEonOrHighestEonothem,,,102
107 
latestEpochOrHighestSeries,,,108
108 
latestEraOrHighestErathem,,,104
109 
latestPeriodOrHighestSystem,,,106
110 
lifeStage,,,27
111 
lithostratigraphicTerms,,,113
112 
locationAccordingTo,,,78
113 
locationID,,,56
114 
locationRemarks,,,79
115 
lowestBiostratigraphicZone,,,111
116 
maximumDistanceAboveSurfaceInMeters,,,77
117 
measurementAccuracy,,,169
118 
measurementDeterminedBy,,,172
119 
measurementDeterminedDate,,,171
120 
measurementID,,,166
121 
measurementMethod,,,173
122 
measurementRemarks,,,174
123 
measurementType,,,167
124 
measurementUnit,,,170
125 
measurementValue,,,168
126 
member,,,116
127 
minimumDistanceAboveSurfaceInMeters,,,76
128 
month,,,49
129 
municipality,,,67
130 
nameAccordingTo,,,138
131 
nameAccordingToID,,,131
132 
namePublishedIn,,,139
133 
namePublishedInID,,,132
134 
namePublishedInYear,,,140
135 
nomenclaturalCode,,,155
136 
nomenclaturalStatus,,,157
137 
occurrenceRemarks,,,21
138 
occurrenceStatus,,,31
139 
originalNameUsage,,,137
140 
originalNameUsageID,,,130
141 
otherCatalogNumbers,,,34
142 
ownerInstitutionCode,,,14
143 
parentNameUsage,,,136
144 
parentNameUsageID,,,129
145 
pointRadiusSpatialFit,,,90
146 
preparations,,Brad: OMIT,32
147 
previousIdentifications,,Brad: OMIT,35
148 
relatedResourceID,,Brad: OMIT,161
149 
relationshipAccordingTo,,,163
150 
relationshipEstablishedDate,,,164
151 
relationshipOfResource,,Brad: OMIT,162
152 
relationshipRemarks,,,165
153 
reproductiveCondition,,,28
154 
resourceID,,,160
155 
resourceRelationshipID,,,159
156 
samplingEffort,,,43
157 
samplingProtocol,,,42
158 
scientificNameID,,,127
159 
startDayOfYear,,,46
160 
subgenus,,,148
161 
taxonConceptID,,,133
162 
taxonID,,,126
163 
taxonRank,,,151
164 
taxonRemarks,,,158
165 
taxonomicStatus,,,156
166 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
167 
verbatimCoordinateSystem,,,83
168 
verbatimCoordinates,,,80
169 
verbatimDepth,,,73
170 
verbatimElevation,,,70
171 
verbatimEventDate,,,51
172 
verbatimSRS,,,84
173 
verbatimTaxonRank,,,152
174 
vernacularName,,,154
175 
waterBody,,,60
176 
year,,,48