Revision 1279
Added by Aaron Marcuse-Kubitza almost 13 years ago
inputs/UArizona/maps/DwC.specimens.csv | ||
---|---|---|
1 | 1 |
"UArizona[DwC]:ariz_raw","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments" |
2 | 2 |
"GlobalUniqueIdentifier","occurrenceID", |
3 | 3 |
"CatalogNumber",,"Map to nothing so it doesn't overwrite CatalogNumberNumeric" |
4 |
"CatalogNumberNumeric","catalogNumber",
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|
4 |
"CatalogNumberNumeric","CatalogNumber",
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|
5 | 5 |
"CollectedDate","eventDate/_alt/2", |
6 | 6 |
"VerbatimCollectingDate","eventDate/_alt/0", |
7 |
"HorizontalDatum",, |
|
8 |
"OriginalCoordinateSystem",, |
|
9 |
"GeoRefMethod",, |
|
10 |
"LatLongComments",, |
|
11 |
"IdentificationModifier",, |
|
7 |
"HorizontalDatum",,"Not used"
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|
8 |
"OriginalCoordinateSystem","verbatimSRS",
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|
9 |
"GeoRefMethod","georeferenceProtocol",
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|
10 |
"LatLongComments","georeferenceRemarks",
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|
11 |
"IdentificationModifier","identificationQualifier",
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|
12 | 12 |
"IdentifiedDate","dateIdentified/_alt/0", |
13 |
"Tissues",, |
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14 |
"AgeClass",, |
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15 |
"GenGankNum",, |
|
16 |
"OtherCatalogNumber",, |
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17 |
"RelatedCatalogItems",, |
|
18 |
"Remarks",, |
|
13 |
"Tissues",,"Not used" |
|
14 |
"AgeClass","lifeStage", |
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15 |
"GenGankNum","associatedSequences/_label[label=""GenBank""]/value","This is a typo of GenBankNum from the original CSV" |
|
16 |
"OtherCatalogNumber","RelatedCatalogItem", |
|
17 |
"RelatedCatalogItems","RelatedCatalogItem", |
|
18 |
"Remarks","Notes", |
inputs/UArizona/maps/DwC.specimens.full.csv | ||
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10 | 10 |
Bed,Bed |
11 | 11 |
Behavior,Behavior |
12 | 12 |
BoundingBox,BoundingBox |
13 |
CatalogNumberNumeric,CatalogNumber, |
|
13 | 14 |
Class,Class |
14 | 15 |
CollectionCode,CollectionCode |
15 | 16 |
CollectionID,CollectionID |
... | ... | |
137 | 138 |
NomenclaturalCode,NomenclaturalCode |
138 | 139 |
NomenclaturalStatus,NomenclaturalStatus |
139 | 140 |
Notes,Notes |
141 |
Remarks,Notes, |
|
140 | 142 |
OccurrenceID,OccurrenceID |
141 | 143 |
OccurrenceRemarks,OccurrenceRemarks |
142 | 144 |
OccurrenceStatus,OccurrenceStatus |
... | ... | |
155 | 157 |
PreviousIdentifications,PreviousIdentifications |
156 | 158 |
RecordNumber,RecordNumber |
157 | 159 |
RecordedBy,RecordedBy |
160 |
OtherCatalogNumber,RelatedCatalogItem, |
|
158 | 161 |
RelatedCatalogItem,RelatedCatalogItem |
162 |
RelatedCatalogItems,RelatedCatalogItem, |
|
159 | 163 |
RelatedResourceID,RelatedResourceID |
160 | 164 |
RelationshipAccordingTo,RelationshipAccordingTo |
161 | 165 |
RelationshipEstablishedDate,RelationshipEstablishedDate |
... | ... | |
206 | 210 |
associatedOccurrences,associatedOccurrences |
207 | 211 |
associatedReferences,associatedReferences |
208 | 212 |
associatedSequences,associatedSequences |
213 |
GenGankNum,"associatedSequences/_label[label=""GenBank""]/value",This is a typo of GenBankNum from the original CSV |
|
209 | 214 |
associatedTaxa,associatedTaxa |
210 | 215 |
basisOfRecord,basisOfRecord |
211 | 216 |
bed,bed |
212 | 217 |
behavior,behavior |
213 |
CatalogNumberNumeric,catalogNumber, |
|
214 | 218 |
catalogNumber,catalogNumber |
215 | 219 |
class,class |
216 | 220 |
collectionCode,collectionCode |
... | ... | |
262 | 266 |
genus,genus |
263 | 267 |
geodeticDatum,geodeticDatum |
264 | 268 |
geologicalContextID,geologicalContextID |
269 |
GeoRefMethod,georeferenceProtocol, |
|
265 | 270 |
georeferenceProtocol,georeferenceProtocol |
271 |
LatLongComments,georeferenceRemarks, |
|
266 | 272 |
georeferenceRemarks,georeferenceRemarks |
267 | 273 |
georeferenceSources,georeferenceSources |
268 | 274 |
georeferenceVerificationStatus,georeferenceVerificationStatus |
... | ... | |
275 | 281 |
higherGeographyID,higherGeographyID |
276 | 282 |
highestBiostratigraphicZone,highestBiostratigraphicZone |
277 | 283 |
identificationID,identificationID |
284 |
IdentificationModifier,identificationQualifier, |
|
278 | 285 |
identificationQualifier,identificationQualifier |
279 | 286 |
identificationReferences,identificationReferences |
280 | 287 |
identificationRemarks,identificationRemarks |
... | ... | |
294 | 301 |
latestEpochOrHighestSeries,latestEpochOrHighestSeries |
295 | 302 |
latestEraOrHighestErathem,latestEraOrHighestErathem |
296 | 303 |
latestPeriodOrHighestSystem,latestPeriodOrHighestSystem |
304 |
AgeClass,lifeStage, |
|
297 | 305 |
lifeStage,lifeStage |
298 | 306 |
lithostratigraphicTerms,lithostratigraphicTerms |
299 | 307 |
locality,locality |
... | ... | |
375 | 383 |
verbatimLatitude,verbatimLatitude |
376 | 384 |
verbatimLocality,verbatimLocality |
377 | 385 |
verbatimLongitude,verbatimLongitude |
386 |
OriginalCoordinateSystem,verbatimSRS, |
|
378 | 387 |
verbatimSRS,verbatimSRS |
379 | 388 |
verbatimTaxonRank,verbatimTaxonRank |
380 | 389 |
vernacularName,vernacularName |
381 | 390 |
waterBody,waterBody |
382 | 391 |
year,year |
383 |
AgeClass,, |
|
384 | 392 |
CatalogNumber,,Map to nothing so it doesn't overwrite CatalogNumberNumeric |
385 |
GenGankNum,, |
|
386 |
GeoRefMethod,, |
|
387 |
HorizontalDatum,, |
|
388 |
IdentificationModifier,, |
|
389 |
LatLongComments,, |
|
390 |
OriginalCoordinateSystem,, |
|
391 |
OtherCatalogNumber,, |
|
392 |
RelatedCatalogItems,, |
|
393 |
Remarks,, |
|
394 |
Tissues,, |
|
393 |
HorizontalDatum,,Not used |
|
394 |
Tissues,,Not used |
inputs/UArizona/maps/VegBIEN.specimens.csv | ||
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76 | 76 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
77 | 77 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
78 | 78 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150 |
79 |
GenGankNum,"/_label[label=""GenBank""]/value",This is a typo of GenBankNum from the original CSV,39 |
|
79 | 80 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
80 | 81 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
81 | 82 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
82 | 83 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
83 | 84 |
FieldNotes,/description,, |
84 | 85 |
Notes,/description,, |
86 |
Remarks,/description,, |
|
85 | 87 |
fieldNotes,/description,, |
86 | 88 |
Collector,/verbatimcollectorname,,23 |
87 | 89 |
RecordedBy,/verbatimcollectorname,,23 |
... | ... | |
102 | 104 |
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
103 | 105 |
AcceptedNameUsage,,,135 |
104 | 106 |
AcceptedNameUsageID,,,128 |
105 |
AgeClass,, |
|
107 |
AgeClass,,,27
|
|
106 | 108 |
AssociatedMedia,,,36 |
107 | 109 |
AssociatedOccurrences,,,38 |
108 | 110 |
AssociatedReferences,,,37 |
... | ... | |
144 | 146 |
FootprintSRS,,,92 |
145 | 147 |
FootprintSpatialFit,,,93 |
146 | 148 |
Formation,,,115 |
147 |
GenGankNum,, |
|
148 |
GeoRefMethod,, |
|
149 |
GeoRefMethod,,,96 |
|
149 | 150 |
GeodeticDatum,,,87 |
150 | 151 |
GeologicalContextID,,,100 |
151 | 152 |
GeoreferenceProtocol,,,96 |
... | ... | |
159 | 160 |
HigherGeography,,,58 |
160 | 161 |
HigherGeographyID,,,57 |
161 | 162 |
HighestBiostratigraphicZone,,,112 |
162 |
HorizontalDatum,, |
|
163 |
HorizontalDatum,,Not used
|
|
163 | 164 |
IdentificationID,,,118 |
164 |
IdentificationModifier,, |
|
165 |
IdentificationModifier,,,124
|
|
165 | 166 |
IdentificationQualifier,,,124 |
166 | 167 |
IdentificationReferences,,,121 |
167 | 168 |
IdentificationRemarks,,,123 |
... | ... | |
173 | 174 |
Island,,,62 |
174 | 175 |
IslandGroup,,,61 |
175 | 176 |
JulianDay,,Brad: OMIT,50 |
176 |
LatLongComments,, |
|
177 |
LatLongComments,,,99
|
|
177 | 178 |
LatestAgeOrHighestStage,,,110 |
178 | 179 |
LatestEonOrHighestEonothem,,,102 |
179 | 180 |
LatestEpochOrHighestSeries,,,108 |
... | ... | |
208 | 209 |
NomenclaturalStatus,,,157 |
209 | 210 |
OccurrenceRemarks,,,21 |
210 | 211 |
OccurrenceStatus,,,31 |
211 |
OriginalCoordinateSystem,, |
|
212 |
OriginalCoordinateSystem,,,84
|
|
212 | 213 |
OriginalNameUsage,,,137 |
213 | 214 |
OriginalNameUsageID,,,130 |
214 |
OtherCatalogNumber,, |
|
215 |
OtherCatalogNumber,,Brad: OMIT,161
|
|
215 | 216 |
OtherCatalogNumbers,,,34 |
216 | 217 |
OwnerInstitutionCode,,,14 |
217 | 218 |
ParentNameUsage,,,136 |
... | ... | |
222 | 223 |
PreviousCatalogNumber,,?; Brad: OMIT,35 |
223 | 224 |
PreviousIdentifications,,Brad: OMIT,35 |
224 | 225 |
RelatedCatalogItem,,Brad: OMIT,161 |
225 |
RelatedCatalogItems,, |
|
226 |
RelatedCatalogItems,,Brad: OMIT,161
|
|
226 | 227 |
RelatedResourceID,,Brad: OMIT,161 |
227 | 228 |
RelationshipAccordingTo,,,163 |
228 | 229 |
RelationshipEstablishedDate,,,164 |
229 | 230 |
RelationshipOfResource,,Brad: OMIT,162 |
230 | 231 |
RelationshipRemarks,,,165 |
231 | 232 |
RelationshipType,,Brad: OMIT,162 |
232 |
Remarks,, |
|
233 | 233 |
ReproductiveCondition,,,28 |
234 | 234 |
ResourceID,,,160 |
235 | 235 |
ResourceRelationshipID,,,159 |
... | ... | |
244 | 244 |
TaxonRemarks,,,158 |
245 | 245 |
TaxonomicStatus,,,156 |
246 | 246 |
TimeOfDay,,Brad: OMIT,45 |
247 |
Tissues,, |
|
247 |
Tissues,,Not used
|
|
248 | 248 |
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125 |
249 | 249 |
VerbatimCoordinateSystem,,,83 |
250 | 250 |
VerbatimCoordinates,,,80 |
Also available in: Unified diff
inputs/UArizona/maps/DwC.specimens.csv: Finished mappings