Revision 12869
Added by Aaron Marcuse-Kubitza almost 11 years ago
| trunk/inputs/XAL/Specimen/test.xml.ref | ||
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Put template: |
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<VegBIEN/>Inserted 0 new rows into database |
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<!--put template--> |
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<VegBIEN> |
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<_setDefault id="-1"> |
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<source_id><source><shortname>XAL.new</shortname></source></source_id> |
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<path> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<authorlocationcode> |
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<_join> |
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<1>$specimenHolderInstitutions</1> |
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<2>$collection</2> |
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<3>$accessionNumber</3> |
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</_join> |
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</authorlocationcode> |
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<elevation_m> |
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<_avg> |
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<1>$minimumElevationInMeters</1> |
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<2>$maximumElevationInMeters</2> |
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</_avg> |
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</elevation_m> |
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<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$locality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
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<locationevent> |
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<locationevent fkey="parent_id"> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<collectiondate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$dayCollected</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$monthCollected</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$yearCollected</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</collectiondate> |
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<count>$individualCount</count> |
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<notes>$occurrenceRemarks</notes> |
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<plantobservation> |
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<authorplantcode>$collectorNumber</authorplantcode> |
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<definedvalue fkey="tablerecord_id"> |
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<userdefined_id> |
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<userdefined> |
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<tablename>plantobservation</tablename> |
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<userdefinedname>sex</userdefinedname> |
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</userdefined> |
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</userdefined_id> |
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<definedvalue>$sex</definedvalue> |
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</definedvalue> |
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<specimenreplicate> |
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<catalognumber_dwc>$accessionNumber</catalognumber_dwc> |
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<collectioncode_dwc>$collection</collectioncode_dwc> |
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<collectionnumber>$collectorNumber</collectionnumber> |
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<institution_id> |
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<sourcelist> |
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<name>$specimenHolderInstitutions</name> |
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<sourcename> |
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<name> |
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<_split> |
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<separator>[,;] *</separator> |
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<value>$specimenHolderInstitutions</value> |
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</_split> |
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</name> |
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</sourcename> |
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</sourcelist> |
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</institution_id> |
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</specimenreplicate> |
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</plantobservation> |
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</aggregateoccurrence> |
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<collector_id><party><fullname>$recordedBy</fullname></party></collector_id> |
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<taxondetermination> |
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<party_id><party><fullname>$identifiedBy</fullname></party></party_id> |
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<taxonverbatim_id> |
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<taxonverbatim> |
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<taxonlabel_id> |
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<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<rank>cultivar</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>forma</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>variety</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>subspecies</rank> |
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<taxonepithet>$subspecies</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>species</rank> |
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<taxonepithet>$specificEpithet</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>genus</rank> |
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<taxonepithet>$genus</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>family</rank> |
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<taxonepithet>$family</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>order</rank> |
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<taxonepithet>$order</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>class</rank> |
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<taxonepithet>$class</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>phylum</rank> |
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<taxonepithet>$phylum</taxonepithet> |
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<parent_id> |
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<taxonlabel> |
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<rank>kingdom</rank> |
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<taxonepithet>$kingdom</taxonepithet> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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<taxonomicname> |
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<_merge_prefix> |
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<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
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<value> |
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<_join_words> |
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<1> |
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<_alt> |
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<1>$taxonName</1> |
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<2> |
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<_join_words> |
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<2><_filter_genus><value>$genus</value></_filter_genus></2> |
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<3>$specificEpithet</3> |
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<4>$subspecies</4> |
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</_join_words> |
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</2> |
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</_alt> |
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</1> |
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<2>$scientificNameAuthorship</2> |
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</_join_words> |
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</value> |
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</_merge_prefix> |
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</taxonomicname> |
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</taxonlabel> |
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</taxonlabel_id> |
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<author>$scientificNameAuthorship</author> |
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<family>$family</family> |
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<genus>$genus</genus> |
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<specific_epithet>$specificEpithet</specific_epithet> |
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<taxonname>$taxonName</taxonname> |
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</taxonverbatim> |
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</taxonverbatim_id> |
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<determinationdate> |
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<_date> |
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<day> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$dayIdentified</value> |
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</_nullIf> |
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</day> |
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<month> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$monthIdentified</value> |
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</_nullIf> |
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</month> |
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<year> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$yearIdentified</value> |
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</_nullIf> |
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</year> |
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</_date> |
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</determinationdate> |
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</taxondetermination> |
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</taxonoccurrence> |
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</locationevent> |
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<waterdepth_m> |
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<_avg> |
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<1>$minimumDepthInMeters</1> |
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<2>$maximumDepthInMeters</2> |
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</_avg> |
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</waterdepth_m> |
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</locationevent> |
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<locationnarrative>$locality</locationnarrative> |
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<locationplace> |
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<place_id> |
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<place> |
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<coordinates_id> |
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<coordinates> |
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<latitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLatitude</value> |
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</_nullIf> |
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</latitude_deg> |
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<longitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLongitude</value> |
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</_nullIf> |
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</longitude_deg> |
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</coordinates> |
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</coordinates_id> |
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<continent>$continent</continent> |
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<country>$country</country> |
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<county>$county</county> |
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<matched_place_id> |
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<place> |
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<source_id><source><shortname>geoscrub</shortname></source></source_id> |
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<coordinates_id> |
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<coordinates> |
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<source_id><source><shortname>geoscrub</shortname></source></source_id> |
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<latitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLatitude</value> |
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</_nullIf> |
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</latitude_deg> |
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<longitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$decimalLongitude</value> |
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</_nullIf> |
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</longitude_deg> |
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</coordinates> |
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</coordinates_id> |
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<country>$country</country> |
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<county>$county</county> |
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<stateprovince>$stateProvince</stateprovince> |
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</place> |
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</matched_place_id> |
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<stateprovince>$stateProvince</stateprovince> |
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</place> |
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</place_id> |
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</locationplace> |
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</location> |
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</path> |
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</_simplifyPath> |
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</path> |
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</_setDefault> |
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</VegBIEN> |
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Inserted 3 new rows into database |
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Also available in: Unified diff
inputs/XAL/Specimen/test.xml.ref: updated for sample data.csv, which contains the columns as a CSV. this fixes a bug where a map.csv must be used on a table that contains the same set of columns (ie. not one with no columns if there are any mappings).