Project

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Profile

1
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order
2
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63
3
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65
4
county,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination(/*_id/namedplace[placesystem=county])/placename,,66
5
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/coordsaccuracy/_noCV/value,,89
6
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination[!namedplace_id]/footprintgeometry_dwc,,91
7
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
8
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
9
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
10
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
11
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
12
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
13
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
14
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
15
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination[!namedplace_id]/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
16
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate,,44
17
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
18
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
19
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
20
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate",,120
21
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
22
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
23
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
24
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
25
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
26
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
27
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
28
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
29
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
30
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
31
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
32
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
33
fieldNotes,/description,,
34
recordedBy,/verbatimcollectorname,,23
35
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
36
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
37
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
38
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
39
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
40
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
41
acceptedNameUsage,,,135
42
acceptedNameUsageID,,,128
43
associatedMedia,,,36
44
associatedOccurrences,,,38
45
associatedReferences,,,37
46
associatedSequences,,,39
47
associatedTaxa,,,40
48
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
49
bed,,,117
50
behavior,,,29
51
continent,,Brad: OMIT,59
52
coordinateUncertaintyInMeters,,,88
53
countryCode,,,64
54
dataGeneralizations,,,17
55
datasetID,,,10
56
datasetName,,,13
57
day,,Brad: OMIT,50
58
dcterms:accessRights,,,5
59
dcterms:bibliographicCitation,,,6
60
dcterms:language,,,2
61
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
62
dcterms:references,,,7
63
dcterms:rights,,,3
64
dcterms:rightsHolder,,,4
65
dcterms:type,,,0
66
disposition,,,33
67
dynamicProperties,,,18
68
earliestAgeOrLowestStage,,,109
69
earliestEonOrLowestEonothem,,,101
70
earliestEpochOrLowestSeries,,,107
71
earliestEraOrLowestErathem,,,103
72
earliestPeriodOrLowestSystem,,,105
73
endDayOfYear,,,47
74
establishmentMeans,,,30
75
eventID,,,41
76
eventRemarks,,,55
77
eventTime,,Brad: OMIT,45
78
footprintSRS,,,92
79
footprintSpatialFit,,,93
80
formation,,,115
81
geodeticDatum,,,87
82
geologicalContextID,,,100
83
georeferenceProtocol,,,96
84
georeferenceRemarks,,,99
85
georeferenceSources,,,97
86
georeferenceVerificationStatus,,,98
87
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
88
georeferencedDate,,,95
89
group,,,114
90
higherClassification,,,141
91
higherGeography,,,58
92
higherGeographyID,,,57
93
highestBiostratigraphicZone,,,112
94
identificationID,,,118
95
identificationQualifier,,,124
96
identificationReferences,,,121
97
identificationRemarks,,,123
98
identificationVerificationStatus,,,122
99
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
100
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
101
informationWithheld,,,16
102
institutionCode,,,
103
island,,,62
104
islandGroup,,,61
105
latestAgeOrHighestStage,,,110
106
latestEonOrHighestEonothem,,,102
107
latestEpochOrHighestSeries,,,108
108
latestEraOrHighestErathem,,,104
109
latestPeriodOrHighestSystem,,,106
110
lifeStage,,,27
111
lithostratigraphicTerms,,,113
112
locationAccordingTo,,,78
113
locationID,,,56
114
locationRemarks,,,79
115
lowestBiostratigraphicZone,,,111
116
maximumDistanceAboveSurfaceInMeters,,,77
117
measurementAccuracy,,,169
118
measurementDeterminedBy,,,172
119
measurementDeterminedDate,,,171
120
measurementID,,,166
121
measurementMethod,,,173
122
measurementRemarks,,,174
123
measurementType,,,167
124
measurementUnit,,,170
125
measurementValue,,,168
126
member,,,116
127
minimumDistanceAboveSurfaceInMeters,,,76
128
month,,,49
129
municipality,,,67
130
nameAccordingTo,,,138
131
nameAccordingToID,,,131
132
namePublishedIn,,,139
133
namePublishedInID,,,132
134
namePublishedInYear,,,140
135
nomenclaturalCode,,,155
136
nomenclaturalStatus,,,157
137
occurrenceRemarks,,,21
138
occurrenceStatus,,,31
139
originalNameUsage,,,137
140
originalNameUsageID,,,130
141
otherCatalogNumbers,,,34
142
ownerInstitutionCode,,,14
143
parentNameUsage,,,136
144
parentNameUsageID,,,129
145
pointRadiusSpatialFit,,,90
146
preparations,,Brad: OMIT,32
147
previousIdentifications,,Brad: OMIT,35
148
relatedResourceID,,Brad: OMIT,161
149
relationshipAccordingTo,,,163
150
relationshipEstablishedDate,,,164
151
relationshipOfResource,,Brad: OMIT,162
152
relationshipRemarks,,,165
153
reproductiveCondition,,,28
154
resourceID,,,160
155
resourceRelationshipID,,,159
156
samplingEffort,,,43
157
samplingProtocol,,,42
158
scientificNameID,,,127
159
startDayOfYear,,,46
160
subgenus,,,148
161
taxonConceptID,,,133
162
taxonID,,,126
163
taxonRank,,,151
164
taxonRemarks,,,158
165
taxonomicStatus,,,156
166
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
167
verbatimCoordinateSystem,,,83
168
verbatimCoordinates,,,80
169
verbatimDepth,,,73
170
verbatimElevation,,,70
171
verbatimEventDate,,,51
172
verbatimSRS,,,84
173
verbatimTaxonRank,,,152
174
vernacularName,,,154
175
waterBody,,,60
176
year,,,48
(8-8/16)