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Name Size Revision Age Author Comment
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
.map.csv.last_cleanup 0 Bytes 4118 about 12 years Aaron Marcuse-Kubitza inputs: Moved maps into subfolders, using the s...
UNCC.csv.md5 33 Bytes 7582 over 11 years Aaron Marcuse-Kubitza Added inputs/UNCC/Specimen/UNCC.csv.url, UNCC.c...
UNCC.csv.url 96 Bytes 7582 over 11 years Aaron Marcuse-Kubitza Added inputs/UNCC/Specimen/UNCC.csv.url, UNCC.c...
VegBIEN.csv 42 Bytes 10619 about 11 years Aaron Marcuse-Kubitza inputs/UNCC/: switched to new-style import, usi...
header.csv 321 Bytes 10091 over 11 years Aaron Marcuse-Kubitza added inputs/*/*/header.csv for CSV inputs, whi...
map.csv 1.81 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
new_terms.csv 1.07 KB 10618 about 11 years Aaron Marcuse-Kubitza inputs/UNCC/Specimen/: translated multi-column ...
postprocess.sql 2.84 KB 10619 about 11 years Aaron Marcuse-Kubitza inputs/UNCC/: switched to new-style import, usi...
run 63 Bytes 10619 about 11 years Aaron Marcuse-Kubitza inputs/UNCC/: switched to new-style import, usi...
test.xml.ref 15.3 KB 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
unmapped_terms.csv 387 Bytes 10618 about 11 years Aaron Marcuse-Kubitza inputs/UNCC/Specimen/: translated multi-column ...
  • svn:ignore: *

Latest revisions

# Date Author Comment
12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

10619 08/07/2013 10:22 AM Aaron Marcuse-Kubitza

inputs/UNCC/: switched to new-style import, using the steps at http://wiki.vegpath.org/Adding_new-style_import_to_a_datasource

10618 08/07/2013 09:50 AM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/: translated multi-column filters to postprocessing derived columns, using the steps at http://wiki.vegpath.org/Adding_new-style_import_to_a_datasource#Translating-filters-to-postprocessing-derived-columns. reproductiveCondition: use the suggested values at DwC.vegpath.org?reproductiveCondition instead of just joining together the values in flower and fruit.

10617 08/07/2013 09:19 AM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/map.csv: usdaRank, infrarank: documented that they should actually be mapped to infraspecificRank*. it is better to map them to taxonRank for now because infraspecificRank is now mapped to VegBIEN.

10616 08/07/2013 09:07 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki. added EQUIV (also mapped in mappings/VegCore-VegBIEN.csv).

10615 08/07/2013 09:04 AM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/map.csv: infrarank: remapped to EQUIV (of usdaRank). usdaRank, infrarank: documented the VegCore term that each would map to.

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