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| Revision:
Name Size Revision Age Author Comment
  .NCBI 12029 almost 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/county_centroids/test.xml.ref,...
  .TNRS 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  .archive 11717 about 11 years Aaron Marcuse-Kubitza inputs/: removed SALVIAS-CSV, because this is a...
  .geoscrub 12029 almost 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/county_centroids/test.xml.ref,...
  .herbaria 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
  ACAD 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  ARIZ 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  BRIT 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  CTFS 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  CVS 12757 over 10 years Aaron Marcuse-Kubitza inputs/CVS/plot_/postprocess.sql: add unique co...
  FIA 12028 almost 11 years Aaron Marcuse-Kubitza inputs/FIA/taxon_observation.**/header.csv: upd...
  GBIF 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  HIBG 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  HVAA 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  IRMNG 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  IUCN 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  JBM 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  MO 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  MT 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  Madidi 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  NCU 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  NVS 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  NY 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  QFA 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  REMIB 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  SALVIAS 12679 over 10 years Aaron Marcuse-Kubitza inputs/SALVIAS/validations.sql: implemented _pl...
  SpeciesLink 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  TEAM 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  TEX 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  TRT 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  TRTE 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  TurboVeg 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  U 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  UBC 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  UNCC 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  VASCAN 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  VegBIEN 12112 almost 11 years Aaron Marcuse-Kubitza fix: inputs/VegBIEN/Redmine/wiki/.htaccess: red...
  VegBank 12792 over 10 years Aaron Marcuse-Kubitza inputs/VegBank/run: `rm=1 import()`: updated ru...
  WIN 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  XAL 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  analytical_db 11567 about 11 years Aaron Marcuse-Kubitza added inputs/analytical_db/_archive/
  bien2_traits 12367 almost 11 years Aaron Marcuse-Kubitza fix: schemas/vegbien.sql: _traits_08_taxonname_...
  bien_web 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  newWorld 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
  test_taxonomic_names 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
.htaccess 334 Bytes 8513 over 11 years Aaron Marcuse-Kubitza added .htaccess files for inputs/, schemas/ bec...
.rsync_filter.download 18 Bytes 10043 over 11 years Aaron Marcuse-Kubitza inputs/.rsync_ignore: test*.xml: turn on syncin...
.rsync_filter.starscream.download 24 Bytes 10039 over 11 years Aaron Marcuse-Kubitza inputs/.rsync_ignore: install.log.sql: only exc...
.rsync_filter.starscream.upload 24 Bytes 10039 over 11 years Aaron Marcuse-Kubitza inputs/.rsync_ignore: install.log.sql: only exc...
.rsync_filter.vegbiendev.upload 18 Bytes 10067 over 11 years Aaron Marcuse-Kubitza inputs/: don't upload test*.xml to jupiter on v...
BIEN2.datasources.xlsx 14.8 KB 3607 over 12 years Aaron Marcuse-Kubitza Added inputs/BIEN2.datasources.xlsx (formerly b...
Makefile 540 Bytes 10026 over 11 years Aaron Marcuse-Kubitza inputs/Makefile: download-logs: use bin/sync_up...
datasource_release_status.xlsx 33 Bytes 11942 almost 11 years Aaron Marcuse-Kubitza inputs/datasource_release_status.xlsx: renamed ...
import.stats.xls 1.2 MB 12158 almost 11 years Aaron Marcuse-Kubitza inputs/import.stats.xls: updated import times
input.Makefile 18.7 KB 12867 over 10 years Aaron Marcuse-Kubitza fix: inputs/input.Makefile: don't treat *.xml a...
publishable datasources.xlsx 6.06 KB 12005 almost 11 years Aaron Marcuse-Kubitza inputs/publishable datasources.xlsx: updated
publishable datasources.xlsx.url 88 Bytes 11942 almost 11 years Aaron Marcuse-Kubitza inputs/datasource_release_status.xlsx: renamed ...
run 207 Bytes 12891 over 10 years Aaron Marcuse-Kubitza inputs/run: postprocess(): documented runtime o...
  • svn:ignore: .~*

Latest revisions

# Date Author Comment
12891 03/25/2014 04:18 AM Aaron Marcuse-Kubitza

inputs/run: postprocess(): documented runtime on vegbiendev (1 h)

12886 03/24/2014 05:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate.institution_id: renamed to duplicate_institutions_sourcelist_id, as decided in the conference calls (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2)

12885 03/24/2014 05:32 PM Aaron Marcuse-Kubitza

inputs/run: postprocess(): updated runtime (25 min)

12882 03/24/2014 05:02 PM Aaron Marcuse-Kubitza

inputs/run: postprocess(): updated runtime (20 min)

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

12873 03/23/2014 11:43 PM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/table.run: switched to using lib/runscripts/table.run instead of mysql.table.run because some subdirs (Source/) need the regular table.run to work properly. mysql.table.run should instead be used directly by subdirs that use the MySQL install.

12869 03/22/2014 05:56 AM Aaron Marcuse-Kubitza

inputs/XAL/Specimen/test.xml.ref: updated for sample data.csv, which contains the columns as a CSV. this fixes a bug where a map.csv must be used on a table that contains the same set of columns (ie. not one with no columns if there are any mappings).

12867 03/22/2014 05:06 AM Aaron Marcuse-Kubitza

fix: inputs/input.Makefile: don't treat *.xml as data files since these are not currently supported

12795 03/21/2014 02:16 AM Aaron Marcuse-Kubitza

fix: inputs/input.Makefile: removed no longer used special handling of XML inputs, support for which was never added to the Makefile. (bin/map, however, does support importing an XML file into a database.) this fixes a bug in XAL, which used to abort with an error but now just imports an empty table.

12794 03/21/2014 12:34 AM Aaron Marcuse-Kubitza

fix: inputs/input.Makefile: %/install: don't ignore errors if table does not exist, to ensure a proper errexit. this is now possible because every dir that this target is being run on should be a data dir. (Source/ used to be a metadata-only dir.)

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