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Revision 12923

validation/**.sql: replaced CREATE OR REPLACE VIEW with CREATE VIEW to match pg_dump output for diffing

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trunk/validation/aggregating/plots/SALVIAS/bien3_validations_salvias_db_original.VegCore.sql
12 12
-- ------------------
13 13
-- 1. Count of projects
14 14
-- ------------------
15
CREATE OR REPLACE VIEW _plots_01_count_of_projects AS
15
CREATE VIEW _plots_01_count_of_projects AS
16 16
SELECT COUNT(*) AS projects
17 17
FROM projects
18 18
;
......
20 20
-- ------------------
21 21
-- 2. List of project names
22 22
-- ------------------
23
CREATE OR REPLACE VIEW _plots_02_list_of_project_names AS
23
CREATE VIEW _plots_02_list_of_project_names AS
24 24
SELECT project_name AS projectname
25 25
FROM projects
26 26
;
......
28 28
-- ------------------
29 29
-- 3. Count of all plots in this source
30 30
-- ------------------
31
CREATE OR REPLACE VIEW _plots_03_count_of_all_plots_in_this_source AS
31
CREATE VIEW _plots_03_count_of_all_plots_in_this_source AS
32 32
SELECT COUNT(DISTINCT "SiteCode") AS plots
33 33
FROM projects p JOIN "plotMetadata" pm
34 34
ON p.project_id=pm.project_id
......
37 37
-- ------------------
38 38
-- 4. Count of plots in each project in this source
39 39
-- ------------------
40
CREATE OR REPLACE VIEW _plots_04_count_of_plots_in_each_project_in_this_source AS
40
CREATE VIEW _plots_04_count_of_plots_in_each_project_in_this_source AS
41 41
SELECT p.project_name, COUNT(*) AS plots
42 42
FROM projects p JOIN "plotMetadata" pm
43 43
ON p.project_id=pm.project_id
......
47 47
-- ------------------
48 48
-- 5.List of plot codes by project
49 49
-- ------------------
50
CREATE OR REPLACE VIEW _plots_05_list_of_plot_codes_by_project AS
50
CREATE VIEW _plots_05_list_of_plot_codes_by_project AS
51 51
SELECT p.project_name, pm."SiteCode"
52 52
FROM projects p JOIN "plotMetadata" pm
53 53
ON p.project_id=pm.project_id
......
56 56
-- ------------------
57 57
-- 6. List of plots with stem measurements
58 58
-- ------------------
59
CREATE OR REPLACE VIEW _plots_06_list_of_plots_with_stem_measurements AS
59
CREATE VIEW _plots_06_list_of_plots_with_stem_measurements AS
60 60
SELECT DISTINCT p.project_name, pm."SiteCode"
61 61
FROM projects p
62 62
JOIN "plotMetadata" pm ON p.project_id=pm.project_id
......
69 69
-- ------------------
70 70
-- 7.List of plots with counts of individuals per species
71 71
-- ------------------
72
CREATE OR REPLACE VIEW _plots_07_list_of_plots_with_counts_of_individuals_per_species AS
72
CREATE VIEW _plots_07_list_of_plots_with_counts_of_individuals_per_species AS
73 73
SELECT DISTINCT p.project_name, pm."SiteCode"
74 74
FROM projects p
75 75
JOIN "plotMetadata" pm ON p.project_id=pm.project_id
......
82 82
-- ------------------
83 83
-- 8.List of plots which use percent cover
84 84
-- ------------------
85
CREATE OR REPLACE VIEW _plots_08_list_of_plots_which_use_percent_cover AS
85
CREATE VIEW _plots_08_list_of_plots_which_use_percent_cover AS
86 86
SELECT DISTINCT p.project_name, pm."SiteCode"
87 87
FROM projects p
88 88
JOIN "plotMetadata" pm ON p.project_id=pm.project_id
......
95 95
-- ------------------
96 96
-- 9.List of plots which use line-intercept
97 97
-- ------------------
98
CREATE OR REPLACE VIEW _plots_09_list_of_plots_which_use_line_intercept AS
98
CREATE VIEW _plots_09_list_of_plots_which_use_line_intercept AS
99 99
SELECT DISTINCT p.project_name, pm."SiteCode"
100 100
FROM projects p
101 101
JOIN "plotMetadata" pm ON p.project_id=pm.project_id
......
115 115
-- incorrect total for plots such as Gentry plot, which count individuals
116 116
-- per species per subplot
117 117
-- ------------------
118
CREATE OR REPLACE VIEW _plots_10_count_of_individuals_per_plot_in_each_project AS
118
CREATE VIEW _plots_10_count_of_individuals_per_plot_in_each_project AS
119 119
SELECT p.project_name, "SiteCode" AS plotcode,
120 120
SUM("NoInd") AS individuals
121 121
FROM projects p
......
130 130
--
131 131
-- Method: count records in stems table
132 132
-- ------------------
133
CREATE OR REPLACE VIEW _plots_11_count_of_stems_per_plot_in_each_project AS
133
CREATE VIEW _plots_11_count_of_stems_per_plot_in_each_project AS
134 134
SELECT p.project_name, "SiteCode" AS plotcode,
135 135
COUNT(DISTINCT stem_id) AS stems
136 136
FROM projects p
......
147 147
-- Note: Assumes identical concatenation of taxonomic fields
148 148
--       to form verbatim taxon name in vegBIEN
149 149
-- ------------------
150
CREATE OR REPLACE VIEW _plots_12_count_of_verbatim_taxa_per_plot_in_each_project AS
150
CREATE VIEW _plots_12_count_of_verbatim_taxa_per_plot_in_each_project AS
151 151
SELECT project_name, plotcode, COUNT(taxon) AS taxa
152 152
FROM
153 153
(
......
170 170
-- Note: Assumes identical concatenation of taxonomic fields
171 171
--       to form verbatim taxon name in vegBIEN.
172 172
-- ------------------
173
CREATE OR REPLACE VIEW _plots_13_list_of_distinct_verbatim_taxa_in_each_plot_in_each_p AS
173
CREATE VIEW _plots_13_list_of_distinct_verbatim_taxa_in_each_plot_in_each_p AS
174 174
SELECT DISTINCT p.project_name, "SiteCode" AS plotcode,
175 175
TRIM(CONCAT_WS(' ',IFNULL("Family",''),IFNULL("Genus",''),IFNULL("Species",''),
176 176
IF(infra_ep_1 IS NULL,IFNULL(auth,''),
......
188 188
-- Note: Assumes identical concatenation of taxonomic fields
189 189
--       to form verbatim taxon name in vegBIEN
190 190
-- ------------------
191
CREATE OR REPLACE VIEW _plots_14_count_of_indiv_per_verbatim_taxon_per_plot_in_each_pr AS
191
CREATE VIEW _plots_14_count_of_indiv_per_verbatim_taxon_per_plot_in_each_pr AS
192 192
SELECT DISTINCT p.project_name, "SiteCode" AS plotcode,
193 193
TRIM(CONCAT_WS(' ',IFNULL("Family",''),IFNULL("Genus",''),IFNULL("Species",''),
194 194
IF(infra_ep_1 IS NULL,IFNULL(auth,''),
......
215 215
--       per species per plot) in same query.
216 216
-- Note 3: currently, there are no SALVIAS percent cover plots in BIEN
217 217
-- ------------------
218
CREATE OR REPLACE VIEW _plots_15_pct_cover_of_each_verb_taxon_in_each_plot_in_each_pro AS
218
CREATE VIEW _plots_15_pct_cover_of_each_verb_taxon_in_each_plot_in_each_pro AS
219 219
SELECT DISTINCT p.project_name, "SiteCode" AS plotcode,
220 220
TRIM(CONCAT_WS(' ',IFNULL("Family",''),IFNULL("Genus",''),IFNULL("Species",''),
221 221
IF(infra_ep_1 IS NULL,IFNULL(auth,''),
......
242 242
--       stratum) with plots without subplots or strata (one cover measure
243 243
--       per species per plot.
244 244
-- ------------------
245
CREATE OR REPLACE VIEW _plots_16_intercepts_for_each_verb_taxon_in_each_plot_each_proj AS
245
CREATE VIEW _plots_16_intercepts_for_each_verb_taxon_in_each_plot_each_proj AS
246 246
SELECT DISTINCT p.project_name, "SiteCode" AS plotcode,
247 247
TRIM(CONCAT_WS(' ',IFNULL("Family",''),IFNULL("Genus",''),IFNULL("Species",''),
248 248
IF(infra_ep_1 IS NULL,IFNULL(auth,''),
......
259 259
-- ------------------
260 260
-- 17. Count of subplots per plot, for each project
261 261
-- ------------------
262
CREATE OR REPLACE VIEW _plots_17_count_of_subplots_per_plot_for_each_project AS
262
CREATE VIEW _plots_17_count_of_subplots_per_plot_for_each_project AS
263 263
SELECT project_name, pm."SiteCode" AS plotcode, COUNT(DISTINCT "Line") as subplots
264 264
FROM projects p
265 265
JOIN "plotMetadata" pm ON p.project_id=pm.project_id
......
273 273
--
274 274
-- Note: includes plots with and without subplots
275 275
-- ------------------
276
CREATE OR REPLACE VIEW _plots_18_list_of_subplots_codes_for_each_plot_for_each_project AS
276
CREATE VIEW _plots_18_list_of_subplots_codes_for_each_plot_for_each_project AS
277 277
SELECT DISTINCT project_name, pm."SiteCode" AS plotcode, "Line" as subplot
278 278
FROM projects p
279 279
JOIN "plotMetadata" pm ON p.project_id=pm.project_id
trunk/validation/aggregating/specimens/NY/qualitative_validations_source_db_NYBG.VegCore.sql
6 6

  
7 7
SET search_path TO "NY";
8 8

  
9
CREATE OR REPLACE VIEW _specimens_01_count_of_total_records_specimens_in_source_db AS
9
CREATE VIEW _specimens_01_count_of_total_records_specimens_in_source_db AS
10 10
SELECT COUNT(*) "totalSpecimenRecords"
11 11
FROM "Ecatalog_all";
12 12
COMMENT ON VIEW _specimens_01_count_of_total_records_specimens_in_source_db IS '
13 13
Check: should return 1 row
14 14
';
15 15

  
16
CREATE OR REPLACE VIEW _specimens_02_count_of_unique_verbatim_families AS
16
CREATE VIEW _specimens_02_count_of_unique_verbatim_families AS
17 17
SELECT COUNT(DISTINCT family) AS families FROM "Ecatalog_all" WHERE family IS NOT NULL;
18 18
COMMENT ON VIEW _specimens_02_count_of_unique_verbatim_families IS '
19 19
Check: should return 1 row
20 20
';
21 21

  
22
CREATE OR REPLACE VIEW _specimens_03_list_of_verbatim_families AS
22
CREATE VIEW _specimens_03_list_of_verbatim_families AS
23 23
SELECT DISTINCT CONCAT_WS(' ', genus, "specificEpithet") AS "specificEpithet"
24 24
FROM "Ecatalog_all"
25 25
WHERE genus IS NOT NULL AND "specificEpithet" IS NOT NULL;
......
27 27
Check: should return same number of rows
28 28
';
29 29

  
30
CREATE OR REPLACE VIEW _specimens_04_count_of_unique_verbatim_species_without_author AS
30
CREATE VIEW _specimens_04_count_of_unique_verbatim_species_without_author AS
31 31
SELECT COUNT(DISTINCT CONCAT_WS(' ', genus, "specificEpithet")) AS subspecies FROM "Ecatalog_all"
32 32
WHERE genus IS NOT NULL AND "specificEpithet" IS NOT NULL AND subspecies IS NOT NULL;
33 33
COMMENT ON VIEW _specimens_04_count_of_unique_verbatim_species_without_author IS '
34 34
Check: should return 1 row
35 35
';
36 36

  
37
CREATE OR REPLACE VIEW _specimens_05_list_of_verbatim_species_excluding_author AS
37
CREATE VIEW _specimens_05_list_of_verbatim_species_excluding_author AS
38 38
SELECT DISTINCT CONCAT_WS(' ', genus, "specificEpithet") AS subspecies FROM "Ecatalog_all"
39 39
WHERE genus IS NOT NULL AND "specificEpithet" IS NOT NULL AND subspecies IS NOT NULL;
40 40
COMMENT ON VIEW _specimens_05_list_of_verbatim_species_excluding_author IS '
41 41
Check: should return 3335 rows
42 42
';
43 43

  
44
CREATE OR REPLACE VIEW _specimens_06_count_of_unique_verb_subsp_taxa_without_author AS
44
CREATE VIEW _specimens_06_count_of_unique_verb_subsp_taxa_without_author AS
45 45
SELECT COUNT(DISTINCT CONCAT_WS(' ', genus, "specificEpithet", subspecies)) AS "specificEpithet" FROM "Ecatalog_all"
46 46
WHERE genus IS NOT NULL AND "specificEpithet" IS NOT NULL;
47 47
COMMENT ON VIEW _specimens_06_count_of_unique_verb_subsp_taxa_without_author IS '
48 48
Check: should return 1 row
49 49
';
50 50

  
51
CREATE OR REPLACE VIEW _specimens_07_list_of_verbatim_subspecific_taxa_without_author AS
51
CREATE VIEW _specimens_07_list_of_verbatim_subspecific_taxa_without_author AS
52 52
SELECT DISTINCT CONCAT_WS(' ', genus, "specificEpithet") AS "specificEpithet"
53 53
FROM "Ecatalog_all"
54 54
WHERE genus IS NOT NULL AND "specificEpithet" IS NOT NULL;
......
56 56
Check: should return 40145 rows
57 57
';
58 58

  
59
CREATE OR REPLACE VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus AS
59
CREATE VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus AS
60 60
SELECT COUNT(DISTINCT TRIM(CONCAT_WS(' ',
61 61
TRIM(CONCAT_WS(' ', genus, IFNULL("specificEpithet",''), IFNULL(subspecies,''))),
62 62
TRIM(IFNULL("scientificNameAuthorship",''))
......
67 67
Check: should return 1 row
68 68
';
69 69

  
70
CREATE OR REPLACE VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus AS
70
CREATE VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus AS
71 71
SELECT DISTINCT TRIM(CONCAT_WS(' ',
72 72
TRIM(CONCAT_WS(' ', genus, IFNULL("specificEpithet",''), IFNULL(subspecies,''))),
73 73
TRIM(IFNULL("scientificNameAuthorship",''))
......
78 78
Check: should return 45997 rows
79 79
';
80 80

  
81
CREATE OR REPLACE VIEW _specimens_10_count_number_of_records_by_institution AS
81
CREATE VIEW _specimens_10_count_number_of_records_by_institution AS
82 82
SELECT specimen_duplicate_institutions, COUNT(*) AS records
83 83
FROM "Ecatalog_all"
84 84
GROUP BY specimen_duplicate_institutions;
......
88 88
Check: should return 6 rows
89 89
';
90 90

  
91
CREATE OR REPLACE VIEW _specimens_11_list_of_three_standard_political_divisions AS
91
CREATE VIEW _specimens_11_list_of_three_standard_political_divisions AS
92 92
SELECT DISTINCT country, "stateProvince", county
93 93
FROM "Ecatalog_all";
94 94
COMMENT ON VIEW _specimens_11_list_of_three_standard_political_divisions IS '
......
97 97
Check: should return 5232 rows
98 98
';
99 99

  
100
CREATE OR REPLACE VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count AS
100
CREATE VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count AS
101 101
SELECT IFNULL("recordedBy",'') AS "collectorName", IFNULL("collectorNumber",'') AS "collectionNumber",
102 102
CONCAT_WS('-', "yearCollected", "monthCollected", "dayCollected") AS "dateCollected", COUNT(*) AS "specimenRecords"
103 103
FROM "Ecatalog_all"
......
107 107
Check: should return 309396 rows
108 108
';
109 109

  
110
CREATE OR REPLACE VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long AS
110
CREATE VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long AS
111 111
SELECT
112 112
(
113 113
SELECT COUNT(*)
......
133 133
Check: should return 1 row
134 134
';
135 135

  
136
CREATE OR REPLACE VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long AS
136
CREATE VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long AS
137 137
SELECT
138 138
(
139 139
SELECT COUNT(*)
......
149 149
Check: should return 1 row
150 150
';
151 151

  
152
CREATE OR REPLACE VIEW _specimens_15_list_distinct_locality_descriptions AS
152
CREATE VIEW _specimens_15_list_distinct_locality_descriptions AS
153 153
SELECT DISTINCT locality__main AS "localityDescription"
154 154
FROM "Ecatalog_all"
155 155
WHERE locality__main IS NOT NULL;
......
157 157
Check: should return 125592 records
158 158
';
159 159

  
160
CREATE OR REPLACE VIEW _specimens_16_list_distinct_specimen_descriptions AS
160
CREATE VIEW _specimens_16_list_distinct_specimen_descriptions AS
161 161
SELECT "specimenDescription" AS "specimenDescription"
162 162
FROM "Ecatalog_all"
163 163
WHERE "specimenDescription" IS NOT NULL;
trunk/validation/aggregating/specimens/qualitative_validations_specimens.sql
9 9

  
10 10
SET search_path TO public_validations, public;
11 11

  
12
CREATE OR REPLACE VIEW _specimens_01_count_of_total_records_specimens_in_source_db AS
12
CREATE VIEW _specimens_01_count_of_total_records_specimens_in_source_db AS
13 13
;
14 14

  
15
CREATE OR REPLACE VIEW _specimens_02_count_of_unique_verbatim_families AS
15
CREATE VIEW _specimens_02_count_of_unique_verbatim_families AS
16 16
;
17 17

  
18
CREATE OR REPLACE VIEW _specimens_03_list_of_verbatim_families AS
18
CREATE VIEW _specimens_03_list_of_verbatim_families AS
19 19
;
20 20

  
21
CREATE OR REPLACE VIEW _specimens_04_count_of_unique_verbatim_species_without_author AS
21
CREATE VIEW _specimens_04_count_of_unique_verbatim_species_without_author AS
22 22
;
23 23

  
24
CREATE OR REPLACE VIEW _specimens_05_list_of_verbatim_species_excluding_author AS
24
CREATE VIEW _specimens_05_list_of_verbatim_species_excluding_author AS
25 25
;
26 26

  
27
CREATE OR REPLACE VIEW _specimens_06_count_of_unique_verb_subsp_taxa_without_author AS
27
CREATE VIEW _specimens_06_count_of_unique_verb_subsp_taxa_without_author AS
28 28
;
29 29

  
30
CREATE OR REPLACE VIEW _specimens_07_list_of_verbatim_subspecific_taxa_without_author AS
30
CREATE VIEW _specimens_07_list_of_verbatim_subspecific_taxa_without_author AS
31 31
;
32 32

  
33
CREATE OR REPLACE VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus AS
33
CREATE VIEW _specimens_08_count_of_unique_verbatim_author_taxa_with_genus AS
34 34
;
35 35

  
36
CREATE OR REPLACE VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus AS
36
CREATE VIEW _specimens_09_list_of_unique_verbatim_author_taxa_with_genus AS
37 37
;
38 38

  
39
CREATE OR REPLACE VIEW _specimens_10_count_number_of_records_by_institution AS
39
CREATE VIEW _specimens_10_count_number_of_records_by_institution AS
40 40
;
41 41

  
42
CREATE OR REPLACE VIEW _specimens_11_list_of_three_standard_political_divisions AS
42
CREATE VIEW _specimens_11_list_of_three_standard_political_divisions AS
43 43
;
44 44
COMMENT ON VIEW _specimens_01_count_of_total_records_specimens_in_source_db
45 45
  IS '
46 46
Note: character set issues may cause mis-matches. This query is a good way to reveal character set issues, either in source db or in BIEN
47 47
';
48 48

  
49
CREATE OR REPLACE VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count AS
49
CREATE VIEW _specimens_12_distinct_collector_name_collect_num_date_w_count AS
50 50
;
51 51

  
52
CREATE OR REPLACE VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long AS
52
CREATE VIEW _specimens_13_count_of_all_verbatim_and_decimal_lat_long AS
53 53
;
54 54

  
55
CREATE OR REPLACE VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long AS
55
CREATE VIEW _specimens_14_count_of_all_invalid_verbatim_lat_long AS
56 56
;
57 57

  
58
CREATE OR REPLACE VIEW _specimens_15_list_distinct_locality_descriptions AS
58
CREATE VIEW _specimens_15_list_distinct_locality_descriptions AS
59 59
;
60 60

  
61
CREATE OR REPLACE VIEW _specimens_16_list_distinct_specimen_descriptions AS
61
CREATE VIEW _specimens_16_list_distinct_specimen_descriptions AS
62 62
;
trunk/validation/aggregating/traits/bien3_validations_traits_bien3.sql
10 10
-- ------------------
11 11
-- 1. Count records
12 12
-- ------------------
13
CREATE OR REPLACE VIEW _traits_01_count_records AS
13
CREATE VIEW _traits_01_count_records AS
14 14
SELECT COUNT(*) AS "totalRecords"
15 15
FROM trait
16 16
JOIN taxonoccurrence USING (taxonoccurrence_id)
......
20 20
-- ------------------
21 21
-- 2. Count trait names
22 22
-- ------------------
23
CREATE OR REPLACE VIEW _traits_02_count_trait_names AS
23
CREATE VIEW _traits_02_count_trait_names AS
24 24
SELECT COUNT(DISTINCT name) AS traits
25 25
FROM trait
26 26
JOIN taxonoccurrence USING (taxonoccurrence_id)
......
29 29
-- ------------------
30 30
-- 3. List trait names
31 31
-- ------------------
32
CREATE OR REPLACE VIEW _traits_03_list_trait_names AS
32
CREATE VIEW _traits_03_list_trait_names AS
33 33
SELECT DISTINCT name AS trait
34 34
FROM trait
35 35
JOIN taxonoccurrence USING (taxonoccurrence_id)
......
40 40
-- ------------------
41 41
-- 4. Count records per trait
42 42
-- ------------------
43
CREATE OR REPLACE VIEW _traits_04_count_records_per_trait AS
43
CREATE VIEW _traits_04_count_records_per_trait AS
44 44
SELECT name AS trait, COUNT(*) AS measurements
45 45
FROM trait
46 46
JOIN taxonoccurrence USING (taxonoccurrence_id)
......
55 55
-- Note: No morphospecies in trait table, therefore count
56 56
-- 		taxon + authority only
57 57
-- ------------------
58
CREATE OR REPLACE VIEW _traits_05_count_taxa AS
58
CREATE VIEW _traits_05_count_taxa AS
59 59
SELECT COUNT(DISTINCT (taxonname, author)) AS taxa
60 60
FROM taxonverbatim
61 61
WHERE source_id = (SELECT source_by_shortname(current_schema))
......
68 68
-- Note 2: Note formation of taxonCorrected: includes family ONLY if
69 69
-- taxon is not determined at least to genus
70 70
-- ------------------
71
CREATE OR REPLACE VIEW _traits_06_list_taxa AS
71
CREATE VIEW _traits_06_list_taxa AS
72 72
SELECT DISTINCT concat_ws(' ', taxonname, author) AS taxonwithauthor
73 73
FROM taxonverbatim
74 74
WHERE source_id = (SELECT source_by_shortname(current_schema))
......
78 78
-- ------------------
79 79
-- 7. Trait, value and units for first 5000 records 
80 80
-- ------------------
81
CREATE OR REPLACE VIEW _traits_07_trait_value_and_units_for_first_5000_records AS
81
CREATE VIEW _traits_07_trait_value_and_units_for_first_5000_records AS
82 82
SELECT name AS trait, value, units
83 83
FROM trait
84 84
JOIN taxonoccurrence USING (taxonoccurrence_id)
......
90 90
-- ------------------
91 91
-- 8. Taxon, trait and value for first 5000 records 
92 92
-- ------------------
93
CREATE OR REPLACE VIEW _traits_08_taxon_trait_and_value_for_first_5000_records AS
93
CREATE VIEW _traits_08_taxon_trait_and_value_for_first_5000_records AS
94 94
SELECT concat_ws(' ', taxonname, author) AS taxonwithauthor, name AS trait, value
95 95
FROM taxonverbatim
96 96
JOIN taxondetermination ON taxondetermination.taxonverbatim_id = taxonverbatim.taxonverbatim_id AND taxondetermination.iscurrent
trunk/validation/aggregating/traits/BIEN2_traits/bien3_validations_traits_original_mysql.VegCore.sql
10 10
-- ------------------
11 11
-- 1. Count records
12 12
-- ------------------
13
CREATE OR REPLACE VIEW _traits_01_count_records AS
13
CREATE VIEW _traits_01_count_records AS
14 14
SELECT COUNT(*) AS totalrecords
15 15
FROM "TraitObservation"
16 16
WHERE "taxonName" IS NOT NULL AND "taxonName"<>'' AND "measurementName" IS NOT NULL AND "measurementName"<>''
......
19 19
-- ------------------
20 20
-- 2. Count trait names
21 21
-- ------------------
22
CREATE OR REPLACE VIEW _traits_02_count_trait_names AS
22
CREATE VIEW _traits_02_count_trait_names AS
23 23
SELECT COUNT(DISTINCT "measurementName") AS traits
24 24
FROM "TraitObservation"
25 25
WHERE "taxonName" IS NOT NULL AND "taxonName"<>'' AND "measurementName" IS NOT NULL AND "measurementName"<>''
......
28 28
-- ------------------
29 29
-- 3. List trait names
30 30
-- ------------------
31
CREATE OR REPLACE VIEW _traits_03_list_trait_names AS
31
CREATE VIEW _traits_03_list_trait_names AS
32 32
SELECT DISTINCT "measurementName" AS trait
33 33
FROM "TraitObservation"
34 34
WHERE "taxonName" IS NOT NULL AND "taxonName"<>'' AND "measurementName" IS NOT NULL AND "measurementName"<>''
......
38 38
-- ------------------
39 39
-- 4. Count records per trait
40 40
-- ------------------
41
CREATE OR REPLACE VIEW _traits_04_count_records_per_trait AS
41
CREATE VIEW _traits_04_count_records_per_trait AS
42 42
SELECT "measurementName" AS trait, COUNT(*) AS measurements
43 43
FROM "TraitObservation"
44 44
WHERE "taxonName" IS NOT NULL AND "taxonName"<>'' AND "measurementName" IS NOT NULL AND "measurementName"<>''
......
49 49
-- ------------------
50 50
-- 5. Count taxa
51 51
-- ------------------
52
CREATE OR REPLACE VIEW _traits_05_count_taxa AS
52
CREATE VIEW _traits_05_count_taxa AS
53 53
SELECT COUNT(DISTINCT
54 54
TRIM(CONCAT_WS(' ',IFNULL("taxonName",''),IFNULL("scientificNameAuthorship",'')))
55 55
) AS taxa
......
60 60
-- ------------------
61 61
-- 6. List distinct taxa
62 62
-- ------------------
63
CREATE OR REPLACE VIEW _traits_06_list_distinct_taxa AS
63
CREATE VIEW _traits_06_list_distinct_taxa AS
64 64
SELECT DISTINCT
65 65
TRIM(CONCAT_WS(' ',IFNULL("taxonName",''),IFNULL("scientificNameAuthorship",'')))
66 66
AS taxonwithauthor
......
72 72
-- ------------------
73 73
-- 7. Trait, value and units
74 74
-- ------------------
75
CREATE OR REPLACE VIEW _traits_07_trait_value_and_units AS
75
CREATE VIEW _traits_07_trait_value_and_units AS
76 76
SELECT "measurementName" AS trait, "measurementValue" AS value, "measurementUnit" AS units
77 77
FROM "TraitObservation"
78 78
WHERE "taxonName" IS NOT NULL AND "taxonName"<>'' AND "measurementName" IS NOT NULL AND "measurementName"<>''
......
82 82
-- ------------------
83 83
-- 8. "taxonName", trait and value for first 5000 records
84 84
-- ------------------
85
CREATE OR REPLACE VIEW _traits_08_taxonname_trait_and_value_for_first_5000_records AS
85
CREATE VIEW _traits_08_taxonname_trait_and_value_for_first_5000_records AS
86 86
SELECT
87 87
TRIM(CONCAT_WS(' ',IFNULL("taxonName",''),IFNULL("scientificNameAuthorship",'')))
88 88
AS taxonwithauthor,

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