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| Revision:
Name Size Revision Age Author Comment
  Ecatalog_all 12886 almost 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  _archive 7550 almost 12 years Aaron Marcuse-Kubitza Added inputs/NY/_archive/
  _src 7571 almost 12 years Aaron Marcuse-Kubitza inputs/: Added .md5 files for all .zip, .gz
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  verify 12039 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: verify/%.out: use a *.sq...
Makefile 27 Bytes 10177 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
NYSpecimenDataAmericas.csv.tar.gz.md5 33 Bytes 7571 almost 12 years Aaron Marcuse-Kubitza inputs/: Added .md5 files for all .zip, .gz
NYSpecimenDataAmericas.csv.tar.gz.url 83 Bytes 7590 almost 12 years Aaron Marcuse-Kubitza Added inputs/NY/NYSpecimenDataAmericas.csv.tar....
NY_DATA_20130212.~.utils.sql 128 Bytes 7624 almost 12 years Aaron Marcuse-Kubitza inputs/NY/NY_DATA_20130212.~.utils.sql: pkey: M...
import_order.txt 20 Bytes 7549 almost 12 years Aaron Marcuse-Kubitza inputs/NY/: Removed tables from previous extract
new_terms.csv 422 Bytes 11788 about 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
run 87 Bytes 10562 over 11 years Aaron Marcuse-Kubitza inputs/NY/: switched to new-style import, using...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
unmapped_terms.csv 302 Bytes 11788 about 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
validations.-.util.sql 316 Bytes 12922 over 10 years Aaron Marcuse-Kubitza added inputs/NY/validations*.sql*
validations.sql 11.5 KB 12922 over 10 years Aaron Marcuse-Kubitza added inputs/NY/validations*.sql*
validations.sql.run 94 Bytes 12922 over 10 years Aaron Marcuse-Kubitza added inputs/NY/validations*.sql*
  • svn:ignore: *

Latest revisions

# Date Author Comment
12922 03/27/2014 03:36 AM Aaron Marcuse-Kubitza

added inputs/NY/validations*.sql*

12886 03/24/2014 05:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate.institution_id: renamed to duplicate_institutions_sourcelist_id, as decided in the conference calls (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2)

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

12039 02/04/2014 10:32 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: verify/%.out: use a *.sql file in the verify/ directory itself to generate *.out, so that each datasource can have its own set of output queries. for datasources that should share the same set of queries, they can instead be symlinked to the same file.

12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11788 11/26/2013 11:11 PM Aaron Marcuse-Kubitza

**/new_terms.csv, unmapped_terms.csv updated (using `make missing_mappings`)

11705 11/21/2013 12:24 AM Aaron Marcuse-Kubitza

copyright scrub: inputs/: removed data provider-owned schema and documentation files, which are not BIEN copyright and should not be part of what is submitted for open-sourcing. these files will remain accessible via the web interface (fs.vegpath.org), but will not be in the repository.

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

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