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| Revision:
Name Size Revision Age Author Comment
  BIEN2 12779 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 12225 almost 11 years Aaron Marcuse-Kubitza _license/non-open-source/applies_to.txt: clarif...
  backups 12176 almost 11 years Aaron Marcuse-Kubitza added backups/vegbien.r12025.backup.md5
  bin 12914 almost 11 years Aaron Marcuse-Kubitza fix: bin/repl: text mode (whether all patterns ...
  config 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  derived 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  exports 12968 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
  inputs 12968 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
  issues 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 12968 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
  mappings 12961 almost 11 years Aaron Marcuse-Kubitza fix: mappings/VegCore-VegBIEN.csv: taxonoccurre...
  planning 12947 almost 11 years Aaron Marcuse-Kubitza planning/workflow/bien3_architecture/stage_I.pn...
  schemas 12968 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
  validation 12965 almost 11 years Aaron Marcuse-Kubitza validation/aggregating/specimens/qualitative_va...
  web 12968 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
  wiki 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 almost 11 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.4 KB 12548 almost 11 years Aaron Marcuse-Kubitza /Makefile: added separate phppgadmin-Linux targ...
README.TXT 29 KB 12959 almost 11 years Aaron Marcuse-Kubitza /README.TXT: moved "to back up e-mails" and "to...
fix_perms 97 Bytes 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 518 Bytes 12968 almost 11 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
unmapped_terms.csv 33 KB 11970 about 11 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
12968 03/29/2014 04:06 AM Aaron Marcuse-Kubitza

*{.sh,run}: runscript targets: use begin_target instead of echo_func so the target name is properly echoed. note that this requires using with_rm so that $rm is properly progagated to applicable invoked targets. (previously, $rm was progagated to all invoked targets. note that with_rm only works inside a runscript target that starts with begin_target.)

12967 03/29/2014 03:58 AM Aaron Marcuse-Kubitza

lib/sh/make.sh: self_make(): renamed to with_rm() for clarity, since this is used only to progagate $rm, and does not also invoke a command with the same name as the current function, as the name might suggest

12966 03/28/2014 07:17 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: updated _specimens_01_count_of_total_records_specimens_in_source_db

12965 03/28/2014 07:10 AM Aaron Marcuse-Kubitza

validation/aggregating/specimens/qualitative_validations_specimens.sql: use taxonoccurrence instead of location as the table that all specimens should have, as decided in the 2014-03-27 conference call (wiki.vegpath.org/2014-03-27_conference_call#aggregating-validations)

12964 03/28/2014 07:03 AM Aaron Marcuse-Kubitza

lib/runscripts/util.run: support conventional main() method as well as `all` target

12963 03/28/2014 02:39 AM Aaron Marcuse-Kubitza

fix: inputs/*/*/map.csv: remapped occurrenceID-mapped fields to dataProviderRecordID when these were not globally unique DwC occurrenceIDs (http://rs.tdwg.org/dwc/terms/#occurrenceID)

12962 03/28/2014 02:34 AM Aaron Marcuse-Kubitza

fix: inputs/CTFS/AggregateObservation/map.csv: field mapped to occurrenceID: remapped to aggregateOrganismObservationID because these are not specimen occurrences

12961 03/28/2014 02:32 AM Aaron Marcuse-Kubitza

fix: mappings/VegCore-VegBIEN.csv: taxonoccurrence.sourceaccessioncode: need to populate from aggregateOrganismObservationID when only that is available

12960 03/28/2014 02:03 AM Aaron Marcuse-Kubitza

bugfix: inputs/NY/Ecatalog_all/map.csv: can't use CatalogNumber as pkey because it's not unique and not always populated. this fixes the NY NULL accessionNumbers bug (wiki.vegpath.org/Aggregating_validations_status#bugs).

12959 03/28/2014 01:31 AM Aaron Marcuse-Kubitza

/README.TXT: moved "to back up e-mails" and "to back up the version history" before settings backup so that the local backup of these is up to date when everything gets backed up

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