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| Revision:
Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  _MySQL 12968 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
  _archive 10089 over 11 years Aaron Marcuse-Kubitza added inputs/GBIF/_archive/
  _src 12988 over 10 years Aaron Marcuse-Kubitza added inputs/GBIF/_src/0001000-131106143450413....
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  raw_occurrence_record_plants 12967 over 10 years Aaron Marcuse-Kubitza lib/sh/make.sh: self_make(): renamed to with_rm...
  verify 12018 almost 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: add!: verify/: also svn:...
Makefile 27 Bytes 9385 over 11 years Aaron Marcuse-Kubitza added inputs/GBIF/Makefile, which links to ../i...
gbif_extract.tar.gz.md5 33 Bytes 7571 almost 12 years Aaron Marcuse-Kubitza inputs/: Added .md5 files for all .zip, .gz
gbif_extract.tar.gz.url 71 Bytes 7586 almost 12 years Aaron Marcuse-Kubitza Added inputs/GBIF/gbif_extract.tar.gz.url
import_order.txt 36 Bytes 10088 over 11 years Aaron Marcuse-Kubitza removed inputs/GBIF/Specimen/, which has been r...
map.csv 1.24 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
new_terms.csv 454 Bytes 11788 almost 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
run 153 Bytes 10051 over 11 years Aaron Marcuse-Kubitza inputs/GBIF/run: inherit from lib/runscripts/da...
table.run 81 Bytes 12873 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/GBIF/table.run: switched to usin...
unmapped_terms.csv 232 Bytes 11788 almost 11 years Aaron Marcuse-Kubitza **/new_terms.csv, unmapped_terms.csv updated (u...
  • svn:ignore: *

Latest revisions

# Date Author Comment
12988 03/30/2014 05:41 PM Aaron Marcuse-Kubitza

added inputs/GBIF/_src/0001000-131106143450413.zip.header.txt, which is useful to see what fields will be available when we switch to the new GBIF export format

12985 03/30/2014 05:11 PM Aaron Marcuse-Kubitza

added inputs/GBIF/_src/0001000-131106143450413.zip.header.txt.run

12968 03/29/2014 04:06 AM Aaron Marcuse-Kubitza

*{.sh,run}: runscript targets: use begin_target instead of echo_func so the target name is properly echoed. note that this requires using with_rm so that $rm is properly progagated to applicable invoked targets. (previously, $rm was progagated to all invoked targets. note that with_rm only works inside a runscript target that starts with begin_target.)

12967 03/29/2014 03:58 AM Aaron Marcuse-Kubitza

lib/sh/make.sh: self_make(): renamed to with_rm() for clarity, since this is used only to progagate $rm, and does not also invoke a command with the same name as the current function, as the name might suggest

12886 03/24/2014 05:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate.institution_id: renamed to duplicate_institutions_sourcelist_id, as decided in the conference calls (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2)

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

12873 03/23/2014 11:43 PM Aaron Marcuse-Kubitza

bugfix: inputs/GBIF/table.run: switched to using lib/runscripts/table.run instead of mysql.table.run because some subdirs (Source/) need the regular table.run to work properly. mysql.table.run should instead be used directly by subdirs that use the MySQL install.

12779 03/20/2014 07:58 PM Aaron Marcuse-Kubitza

*{.sh,run}: use new begin_target instead of `echo_func; set_make_vars`

12516 02/27/2014 01:27 PM Aaron Marcuse-Kubitza

bugfix: *.sql: public.source_by_shortname(): need to wrap it in a nested SELECT because Postgres incorrectly does not constant-fold (inline) it, leading to a slowdown when it is therefore run many times. this is done using the steps at wiki.vegpath.org/Postgres_queries#wrap-function-call-in-nested-SELECT .

12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

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