Revision 13154
Added by Aaron Marcuse-Kubitza over 10 years ago
trunk/schemas/Makefile | ||
---|---|---|
10 | 10 |
|
11 | 11 |
##### General targets |
12 | 12 |
|
13 |
all = vegbien.sql vegbien.my.sql util.sql py_util.sql |
|
13 |
all = public_.sql vegbien.sql vegbien.my.sql util.sql py_util.sql
|
|
14 | 14 |
|
15 | 15 |
all: _always $(all) ; |
16 | 16 |
|
... | ... | |
31 | 31 |
psqlNoSearchPath := env no_search_path=1 ../bin/psql_script_vegbien |
32 | 32 |
psql_verbose := env no_search_path=1 ../bin/psql_verbose_vegbien |
33 | 33 |
|
34 |
# Must come before `%/install: vegbien.sql` to override it
|
|
34 |
# Must come before `%/install: public_.sql` to override it
|
|
35 | 35 |
%/install: %.sql _always |
36 | 36 |
-<$< $(psqlNoSearchPath) |
37 | 37 |
# ignore errors if schema exists |
... | ... | |
53 | 53 |
# Installs a version of the public schema |
54 | 54 |
# usage: make schemas/public/reinstall |
55 | 55 |
# make schemas/r#/reinstall |
56 |
%/install: vegbien.sql _always
|
|
56 |
%/install: public_.sql _always
|
|
57 | 57 |
echo $(call mkSchemaCmd,$*)\ |
58 | 58 |
"COMMENT ON SCHEMA \"$*\" IS 'Version: $* ($(date))';"|$(psqlNoSearchPath) |
59 | 59 |
# create a custom *_validation schema for *each* public schema, rather than |
... | ... | |
64 | 64 |
's/( |::)public(_[[:alnum:]_]+)?([.,;]| [^[:lower:]])/\1$(*q)$*\2$(*q)\3/g'\ |
65 | 65 |
|$(psqlNoSearchPath) # [[:alnum:]_]+, not ...*, because public_ is a username |
66 | 66 |
|
67 |
%/uninstall: vegbien.sql _always
|
|
67 |
%/uninstall: public_.sql _always
|
|
68 | 68 |
$(call confirmRmPublicSchema,$*) |
69 | 69 |
# don't use public.rm(), because when the public schema is incompletely |
70 | 70 |
# imported, this function will not yet exist |
... | ... | |
102 | 102 |
|
103 | 103 |
pg_dump = env schema= ../bin/pg_dump_vegbien $(1) >$@ |
104 | 104 |
|
105 |
vegbien.sql:
|
|
105 |
public_.sql:
|
|
106 | 106 |
# include schemas that depend on `public` so they are restored along with it |
107 | 107 |
unset version dump_opts; $(call pg_dump,public --schema='public_*') |
108 | 108 |
|
109 |
vegbien.sql: public_.sql |
|
110 |
(cat public_.sql; schema=1 ../bin/pg_dump_vegbien all --schema='geoscrub' \ |
|
111 |
--schema='"TNRS"' --exclude-table='*."~"*' --exclude-table='*."Source"') >$@ |
|
112 |
# `all`: prevents auto-adding a --schema entry |
|
113 |
|
|
109 | 114 |
py_util.sql: |
110 | 115 |
env owners=1 $(call pg_dump,py_util) |
111 | 116 |
|
trunk/schemas/vegbien.my.sql | ||
---|---|---|
13074 | 13074 |
-- PostgreSQL database dump complete |
13075 | 13075 |
-- |
13076 | 13076 |
|
13077 |
-- |
|
13078 |
-- PostgreSQL database dump |
|
13079 |
-- |
|
13080 |
|
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13081 |
|
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13082 |
|
|
13083 |
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13084 |
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13085 |
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13086 |
|
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13087 |
|
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13088 |
-- |
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13089 |
-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: - |
|
13090 |
-- |
|
13091 |
|
|
13092 |
CREATE SCHEMA `TNRS`; |
|
13093 |
|
|
13094 |
|
|
13095 |
-- |
|
13096 |
-- Name: SCHEMA `TNRS`; Type: COMMENT; Schema: -; Owner: - |
|
13097 |
-- |
|
13098 |
|
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13099 |
|
|
13100 |
|
|
13101 |
|
|
13102 |
-- |
|
13103 |
-- Name: geoscrub; Type: SCHEMA; Schema: -; Owner: - |
|
13104 |
-- |
|
13105 |
|
|
13106 |
CREATE SCHEMA geoscrub; |
|
13107 |
|
|
13108 |
|
|
13109 |
|
|
13110 |
|
|
13111 |
-- |
|
13112 |
-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: - |
|
13113 |
-- |
|
13114 |
|
|
13115 |
|
|
13116 |
|
|
13117 |
|
|
13118 |
-- |
|
13119 |
-- Name: family_is_homonym(varchar(255)); Type: FUNCTION; Schema: TNRS; Owner: - |
|
13120 |
-- |
|
13121 |
|
|
13122 |
|
|
13123 |
|
|
13124 |
|
|
13125 |
-- |
|
13126 |
-- Name: genus_is_homonym(varchar(255)); Type: FUNCTION; Schema: TNRS; Owner: - |
|
13127 |
-- |
|
13128 |
|
|
13129 |
|
|
13130 |
|
|
13131 |
|
|
13132 |
-- |
|
13133 |
-- Name: map_taxonomic_status(varchar(255), varchar(255)); Type: FUNCTION; Schema: TNRS; Owner: - |
|
13134 |
-- |
|
13135 |
|
|
13136 |
|
|
13137 |
|
|
13138 |
|
|
13139 |
-- |
|
13140 |
-- Name: tnrs_populate_fields(); Type: FUNCTION; Schema: TNRS; Owner: - |
|
13141 |
-- |
|
13142 |
|
|
13143 |
|
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13144 |
|
|
13145 |
|
|
13146 |
-- |
|
13147 |
-- Name: FUNCTION tnrs_populate_fields(); Type: COMMENT; Schema: TNRS; Owner: - |
|
13148 |
-- |
|
13149 |
|
|
13150 |
|
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13151 |
|
|
13152 |
|
|
13153 |
|
|
13154 |
|
|
13155 |
-- |
|
13156 |
-- Name: map_coord_validity(int(11)); Type: FUNCTION; Schema: geoscrub; Owner: - |
|
13157 |
-- |
|
13158 |
|
|
13159 |
|
|
13160 |
|
|
13161 |
|
|
13162 |
-- |
|
13163 |
-- Name: map_geovalidity(int(11)); Type: FUNCTION; Schema: geoscrub; Owner: - |
|
13164 |
-- |
|
13165 |
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13166 |
|
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13167 |
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13168 |
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13169 |
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13170 |
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13171 |
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13172 |
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13173 |
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13174 |
|
|
13175 |
-- |
|
13176 |
-- Name: tnrs; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: |
|
13177 |
-- |
|
13178 |
|
|
13179 |
CREATE TABLE tnrs ( |
|
13180 |
batch varchar(255) NOT NULL, |
|
13181 |
`Name_number` int(11) NOT NULL, |
|
13182 |
`Name_submitted` varchar(255) NOT NULL, |
|
13183 |
`Overall_score` double precision, |
|
13184 |
`Name_matched` varchar(255), |
|
13185 |
`Name_matched_rank` varchar(255), |
|
13186 |
`Name_score` double precision, |
|
13187 |
`Name_matched_author` varchar(255), |
|
13188 |
`Name_matched_url` varchar(255), |
|
13189 |
`Author_matched` varchar(255), |
|
13190 |
`Author_score` double precision, |
|
13191 |
`Family_matched` varchar(255), |
|
13192 |
`Family_score` double precision, |
|
13193 |
`Name_matched_accepted_family` varchar(255), |
|
13194 |
`Genus_matched` varchar(255), |
|
13195 |
`Genus_score` double precision, |
|
13196 |
`Specific_epithet_matched` varchar(255), |
|
13197 |
`Specific_epithet_score` double precision, |
|
13198 |
`Infraspecific_rank` varchar(255), |
|
13199 |
`Infraspecific_epithet_matched` varchar(255), |
|
13200 |
`Infraspecific_epithet_score` double precision, |
|
13201 |
`Infraspecific_rank_2` varchar(255), |
|
13202 |
`Infraspecific_epithet_2_matched` varchar(255), |
|
13203 |
`Infraspecific_epithet_2_score` double precision, |
|
13204 |
`Annotations` varchar(255), |
|
13205 |
`Unmatched_terms` varchar(255), |
|
13206 |
`Taxonomic_status` varchar(255), |
|
13207 |
`Accepted_name` varchar(255), |
|
13208 |
`Accepted_name_author` varchar(255), |
|
13209 |
`Accepted_name_rank` varchar(255), |
|
13210 |
`Accepted_name_url` varchar(255), |
|
13211 |
`Accepted_name_species` varchar(255), |
|
13212 |
`Accepted_name_family` varchar(255), |
|
13213 |
`Selected` varchar(255), |
|
13214 |
`Source` varchar(255), |
|
13215 |
`Warnings` varchar(255), |
|
13216 |
`Accepted_name_lsid` varchar(255), |
|
13217 |
is_valid_match int(1) NOT NULL, |
|
13218 |
scrubbed_unique_taxon_name varchar(255) |
|
13219 |
); |
|
13220 |
|
|
13221 |
|
|
13222 |
-- |
|
13223 |
-- Name: TABLE tnrs; Type: COMMENT; Schema: TNRS; Owner: - |
|
13224 |
-- |
|
13225 |
|
|
13226 |
|
|
13227 |
|
|
13228 |
|
|
13229 |
-- |
|
13230 |
-- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: - |
|
13231 |
-- |
|
13232 |
|
|
13233 |
|
|
13234 |
|
|
13235 |
|
|
13236 |
-- |
|
13237 |
-- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: - |
|
13238 |
-- |
|
13239 |
|
|
13240 |
|
|
13241 |
|
|
13242 |
|
|
13243 |
-- |
|
13244 |
-- Name: VIEW `ValidMatchedTaxon`; Type: COMMENT; Schema: TNRS; Owner: - |
|
13245 |
-- |
|
13246 |
|
|
13247 |
|
|
13248 |
|
|
13249 |
|
|
13250 |
-- |
|
13251 |
-- Name: batch; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: |
|
13252 |
-- |
|
13253 |
|
|
13254 |
CREATE TABLE batch ( |
|
13255 |
id varchar(255) NOT NULL, |
|
13256 |
id_by_time varchar(255), |
|
13257 |
time_submitted timestamp NULL , |
|
13258 |
client_version varchar(255) |
|
13259 |
); |
|
13260 |
|
|
13261 |
|
|
13262 |
-- |
|
13263 |
-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: |
|
13264 |
-- |
|
13265 |
|
|
13266 |
CREATE TABLE batch_download_settings ( |
|
13267 |
id varchar(255) NOT NULL, |
|
13268 |
`E-mail` varchar(255), |
|
13269 |
`Id` varchar(255), |
|
13270 |
`Job type` varchar(255), |
|
13271 |
`Contains Id` int(1), |
|
13272 |
`Start time` varchar(255), |
|
13273 |
`Finish time` varchar(255), |
|
13274 |
`TNRS version` varchar(255), |
|
13275 |
`Sources selected` varchar(255), |
|
13276 |
`Match threshold` double precision, |
|
13277 |
`Classification` varchar(255), |
|
13278 |
`Allow partial matches?` int(1), |
|
13279 |
`Sort by source` int(1), |
|
13280 |
`Constrain by higher taxonomy` int(1) |
|
13281 |
); |
|
13282 |
|
|
13283 |
|
|
13284 |
-- |
|
13285 |
-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: - |
|
13286 |
-- |
|
13287 |
|
|
13288 |
|
|
13289 |
|
|
13290 |
|
|
13291 |
-- |
|
13292 |
-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: -; Tablespace: |
|
13293 |
-- |
|
13294 |
|
|
13295 |
CREATE TABLE client_version ( |
|
13296 |
id varchar(255) NOT NULL, |
|
13297 |
global_rev int(11) NOT NULL, |
|
13298 |
`/lib/tnrs.py rev` int(11), |
|
13299 |
`/bin/tnrs_db rev` int(11) |
|
13300 |
); |
|
13301 |
|
|
13302 |
|
|
13303 |
-- |
|
13304 |
-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: - |
|
13305 |
-- |
|
13306 |
|
|
13307 |
|
|
13308 |
|
|
13309 |
|
|
13310 |
-- |
|
13311 |
-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: - |
|
13312 |
-- |
|
13313 |
|
|
13314 |
|
|
13315 |
|
|
13316 |
|
|
13317 |
-- |
|
13318 |
-- Name: COLUMN client_version.`/lib/tnrs.py rev`; Type: COMMENT; Schema: TNRS; Owner: - |
|
13319 |
-- |
|
13320 |
|
|
13321 |
|
|
13322 |
|
|
13323 |
|
|
13324 |
-- |
|
13325 |
-- Name: COLUMN client_version.`/bin/tnrs_db rev`; Type: COMMENT; Schema: TNRS; Owner: - |
|
13326 |
-- |
|
13327 |
|
|
13328 |
|
|
13329 |
|
|
13330 |
|
|
13331 |
-- |
|
13332 |
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: VIEW; Schema: TNRS; Owner: - |
|
13333 |
-- |
|
13334 |
|
|
13335 |
|
|
13336 |
|
|
13337 |
|
|
13338 |
-- |
|
13339 |
-- Name: VIEW `taxon_scrub.scrubbed_unique_taxon_name.*`; Type: COMMENT; Schema: TNRS; Owner: - |
|
13340 |
-- |
|
13341 |
|
|
13342 |
|
|
13343 |
|
|
13344 |
|
|
13345 |
-- |
|
13346 |
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: - |
|
13347 |
-- |
|
13348 |
|
|
13349 |
|
|
13350 |
|
|
13351 |
|
|
13352 |
-- |
|
13353 |
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: - |
|
13354 |
-- |
|
13355 |
|
|
13356 |
|
|
13357 |
|
|
13358 |
|
|
13359 |
|
|
13360 |
|
|
13361 |
-- |
|
13362 |
-- Name: county_centroids; Type: TABLE; Schema: geoscrub; Owner: -; Tablespace: |
|
13363 |
-- |
|
13364 |
|
|
13365 |
CREATE TABLE county_centroids ( |
|
13366 |
`*row_num` int(11) NOT NULL, |
|
13367 |
`stateProvince` varchar(255), |
|
13368 |
county varchar(255), |
|
13369 |
`decimalLatitude` double precision, |
|
13370 |
`decimalLongitude` double precision, |
|
13371 |
`*error_km` double precision |
|
13372 |
); |
|
13373 |
|
|
13374 |
|
|
13375 |
-- |
|
13376 |
-- Name: geoscrub_output; Type: TABLE; Schema: geoscrub; Owner: -; Tablespace: |
|
13377 |
-- |
|
13378 |
|
|
13379 |
CREATE TABLE geoscrub_output ( |
|
13380 |
`*row_num` int(11) NOT NULL, |
|
13381 |
`decimalLatitude` double precision NOT NULL, |
|
13382 |
`decimalLongitude` double precision NOT NULL, |
|
13383 |
country varchar(255), |
|
13384 |
`stateProvince` varchar(255), |
|
13385 |
county varchar(255), |
|
13386 |
`acceptedCountry` varchar(255), |
|
13387 |
`acceptedStateProvince` varchar(255), |
|
13388 |
`acceptedCounty` varchar(255), |
|
13389 |
`latLongDomainValid_verbatim` int(11), |
|
13390 |
`latLongInCountry_verbatim` int(11), |
|
13391 |
`latLongInStateProvince_verbatim` int(11), |
|
13392 |
`latLongInCounty_verbatim` int(11), |
|
13393 |
`latLongDomainValid` int(1), |
|
13394 |
`latLongInCountry` int(1), |
|
13395 |
`latLongInStateProvince` int(1), |
|
13396 |
`latLongInCounty` int(1), |
|
13397 |
geovalid int(1) |
|
13398 |
); |
|
13399 |
|
|
13400 |
|
|
13401 |
|
|
13402 |
|
|
13403 |
-- |
|
13404 |
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: |
|
13405 |
-- |
|
13406 |
|
|
13407 |
ALTER TABLE batch_download_settings |
|
13408 |
ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id); |
|
13409 |
|
|
13410 |
|
|
13411 |
-- |
|
13412 |
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: |
|
13413 |
-- |
|
13414 |
|
|
13415 |
ALTER TABLE batch |
|
13416 |
ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time); |
|
13417 |
|
|
13418 |
|
|
13419 |
-- |
|
13420 |
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: |
|
13421 |
-- |
|
13422 |
|
|
13423 |
ALTER TABLE batch |
|
13424 |
ADD CONSTRAINT batch_pkey PRIMARY KEY (id); |
|
13425 |
|
|
13426 |
|
|
13427 |
-- |
|
13428 |
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: |
|
13429 |
-- |
|
13430 |
|
|
13431 |
ALTER TABLE client_version |
|
13432 |
ADD CONSTRAINT client_version_pkey PRIMARY KEY (id); |
|
13433 |
|
|
13434 |
|
|
13435 |
-- |
|
13436 |
-- Name: tnrs_Name_submitted_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: |
|
13437 |
-- |
|
13438 |
|
|
13439 |
ALTER TABLE tnrs |
|
13440 |
ADD CONSTRAINT `tnrs_Name_submitted_key` UNIQUE (`Name_submitted`); |
|
13441 |
|
|
13442 |
|
|
13443 |
-- |
|
13444 |
-- Name: tnrs_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace: |
|
13445 |
-- |
|
13446 |
|
|
13447 |
ALTER TABLE tnrs |
|
13448 |
ADD CONSTRAINT tnrs_pkey PRIMARY KEY (batch, `Name_number`); |
|
13449 |
|
|
13450 |
|
|
13451 |
|
|
13452 |
|
|
13453 |
-- |
|
13454 |
-- Name: county_centroids_pkey; Type: CONSTRAINT; Schema: geoscrub; Owner: -; Tablespace: |
|
13455 |
-- |
|
13456 |
|
|
13457 |
ALTER TABLE county_centroids |
|
13458 |
ADD CONSTRAINT county_centroids_pkey PRIMARY KEY (`*row_num`); |
|
13459 |
|
|
13460 |
|
|
13461 |
-- |
|
13462 |
-- Name: geoscrub_output_pkey; Type: CONSTRAINT; Schema: geoscrub; Owner: -; Tablespace: |
|
13463 |
-- |
|
13464 |
|
|
13465 |
ALTER TABLE geoscrub_output |
|
13466 |
ADD CONSTRAINT geoscrub_output_pkey PRIMARY KEY (`*row_num`); |
|
13467 |
|
|
13468 |
|
|
13469 |
|
|
13470 |
|
|
13471 |
-- |
|
13472 |
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: |
|
13473 |
-- |
|
13474 |
|
|
13475 |
CREATE INDEX batch_client_version_idx ON batch (client_version); |
|
13476 |
|
|
13477 |
|
|
13478 |
-- |
|
13479 |
-- Name: tnrs__valid_match; Type: INDEX; Schema: TNRS; Owner: -; Tablespace: |
|
13480 |
-- |
|
13481 |
|
|
13482 |
|
|
13483 |
|
|
13484 |
|
|
13485 |
|
|
13486 |
|
|
13487 |
-- |
|
13488 |
-- Name: geoscrub_output__unique; Type: INDEX; Schema: geoscrub; Owner: -; Tablespace: |
|
13489 |
-- |
|
13490 |
|
|
13491 |
|
|
13492 |
|
|
13493 |
|
|
13494 |
|
|
13495 |
|
|
13496 |
-- |
|
13497 |
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: - |
|
13498 |
-- |
|
13499 |
|
|
13500 |
|
|
13501 |
|
|
13502 |
|
|
13503 |
-- |
|
13504 |
-- Name: tnrs_populate_fields; Type: TRIGGER; Schema: TNRS; Owner: - |
|
13505 |
-- |
|
13506 |
|
|
13507 |
|
|
13508 |
|
|
13509 |
|
|
13510 |
-- |
|
13511 |
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: - |
|
13512 |
-- |
|
13513 |
|
|
13514 |
ALTER TABLE batch |
|
13515 |
ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE; |
|
13516 |
|
|
13517 |
|
|
13518 |
-- |
|
13519 |
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: - |
|
13520 |
-- |
|
13521 |
|
|
13522 |
ALTER TABLE batch_download_settings |
|
13523 |
ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE; |
|
13524 |
|
|
13525 |
|
|
13526 |
-- |
|
13527 |
-- Name: tnrs_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: - |
|
13528 |
-- |
|
13529 |
|
|
13530 |
ALTER TABLE tnrs |
|
13531 |
ADD CONSTRAINT tnrs_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE; |
|
13532 |
|
|
13533 |
|
|
13534 |
-- |
|
13535 |
-- Name: TNRS; Type: ACL; Schema: -; Owner: - |
|
13536 |
-- |
|
13537 |
|
|
13538 |
|
|
13539 |
|
|
13540 |
|
|
13541 |
|
|
13542 |
|
|
13543 |
|
|
13544 |
-- |
|
13545 |
-- Name: tnrs; Type: ACL; Schema: TNRS; Owner: - |
|
13546 |
-- |
|
13547 |
|
|
13548 |
|
|
13549 |
|
|
13550 |
|
|
13551 |
|
|
13552 |
|
|
13553 |
|
|
13554 |
-- |
|
13555 |
-- Name: MatchedTaxon; Type: ACL; Schema: TNRS; Owner: - |
|
13556 |
-- |
|
13557 |
|
|
13558 |
|
|
13559 |
|
|
13560 |
|
|
13561 |
|
|
13562 |
|
|
13563 |
|
|
13564 |
-- |
|
13565 |
-- Name: ValidMatchedTaxon; Type: ACL; Schema: TNRS; Owner: - |
|
13566 |
-- |
|
13567 |
|
|
13568 |
|
|
13569 |
|
|
13570 |
|
|
13571 |
|
|
13572 |
|
|
13573 |
|
|
13574 |
-- |
|
13575 |
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: ACL; Schema: TNRS; Owner: - |
|
13576 |
-- |
|
13577 |
|
|
13578 |
|
|
13579 |
|
|
13580 |
|
|
13581 |
|
|
13582 |
|
|
13583 |
|
|
13584 |
-- |
|
13585 |
-- Name: taxon_scrub; Type: ACL; Schema: TNRS; Owner: - |
|
13586 |
-- |
|
13587 |
|
|
13588 |
|
|
13589 |
|
|
13590 |
|
|
13591 |
|
|
13592 |
|
|
13593 |
|
|
13594 |
-- |
|
13595 |
-- PostgreSQL database dump complete |
|
13596 |
-- |
|
13597 |
|
trunk/schemas/public_.sql | ||
---|---|---|
1 |
-- |
|
2 |
-- PostgreSQL database dump |
|
3 |
-- |
|
4 |
|
|
5 |
SET statement_timeout = 0; |
|
6 |
SET lock_timeout = 0; |
|
7 |
SET client_encoding = 'UTF8'; |
|
8 |
SET standard_conforming_strings = on; |
|
9 |
SET check_function_bodies = false; |
|
10 |
SET client_min_messages = warning; |
|
11 |
|
|
12 |
-- |
|
13 |
-- Name: public_validations; Type: SCHEMA; Schema: -; Owner: - |
|
14 |
-- |
|
15 |
|
|
16 |
CREATE SCHEMA public_validations; |
|
17 |
|
|
18 |
|
|
19 |
-- |
|
20 |
-- Name: SCHEMA public_validations; Type: COMMENT; Schema: -; Owner: - |
|
21 |
-- |
|
22 |
|
|
23 |
COMMENT ON SCHEMA public_validations IS ' |
|
24 |
aggregating validations queries |
|
25 |
|
|
26 |
to run the validations on all datasources: |
|
27 |
SELECT public_validations.remake_diff_tables(); |
|
28 |
|
|
29 |
to run the validations on a particular datasource: |
|
30 |
SELECT public_validations.remake_diff_tables(''datasource''); |
|
31 |
|
|
32 |
to run a particular validations query for a datasource: |
|
33 |
SELECT public_validations.remake_diff_table(''"datasource"._view_name''); |
|
34 |
|
|
35 |
to reset the queries to what''s in schemas/vegbien.sql: |
|
36 |
SELECT public_validations.rm_output_queries(); |
|
37 |
run the portion of schemas/vegbien.sql from |
|
38 |
SET search_path = public_validations, pg_catalog; |
|
39 |
to the last _* view |
|
40 |
**IMPORTANT**: run every `CREATE TYPE` with a comment containing "custom" |
|
41 |
|
|
42 |
to remove a validations query so its columns can be changed: |
|
43 |
SELECT public_validations.rm_output_queries(''public_validations._view_name''); |
|
44 |
-- not rm_query_view() because that also removes input queries |
|
45 |
|
|
46 |
to change the key and value columns for a validations query: |
|
47 |
DROP TYPE public_validations."keys_~type._view_name" CASCADE; |
|
48 |
CREATE TYPE public_validations."keys_~type._view_name" AS (key_cols); |
|
49 |
DROP TYPE public_validations."values__~type._view_name" CASCADE; |
|
50 |
CREATE TYPE public_validations."values__~type._view_name" AS (value_cols); |
|
51 |
SELECT public_validations.remake_diff_table(''"datasource"._view_name''); |
|
52 |
|
|
53 |
to reset the key and value columns for all validations queries: |
|
54 |
SELECT public_validations.rm_output_queries(); |
|
55 |
reset the queries to what''s in schemas/vegbien.sql, as described above |
|
56 |
SELECT public_validations.remake_diff_tables(); |
|
57 |
'; |
|
58 |
|
|
59 |
|
|
60 |
SET search_path = public, pg_catalog; |
|
61 |
|
|
62 |
-- |
|
63 |
-- Name: accesslevel; Type: TYPE; Schema: public; Owner: - |
|
64 |
-- |
|
65 |
|
|
66 |
CREATE TYPE accesslevel AS ENUM ( |
|
67 |
'private', |
|
68 |
'metadata only', |
|
69 |
'data by request', |
|
70 |
'public' |
|
71 |
); |
|
72 |
|
|
73 |
|
|
74 |
-- |
|
75 |
-- Name: coordinatesource; Type: TYPE; Schema: public; Owner: - |
|
76 |
-- |
|
77 |
|
|
78 |
CREATE TYPE coordinatesource AS ENUM ( |
|
79 |
'source data', |
|
80 |
'GPS', |
|
81 |
'georeferencing' |
|
82 |
); |
|
83 |
|
|
84 |
|
|
85 |
-- |
|
86 |
-- Name: TYPE coordinatesource; Type: COMMENT; Schema: public; Owner: - |
|
87 |
-- |
|
88 |
|
|
89 |
COMMENT ON TYPE coordinatesource IS ' |
|
90 |
From <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore_data_dictionary#coordinateSource> |
|
91 |
'; |
|
92 |
|
|
93 |
|
|
94 |
-- |
|
95 |
-- Name: establishmentmeans_dwc; Type: TYPE; Schema: public; Owner: - |
|
96 |
-- |
|
97 |
|
|
98 |
CREATE TYPE establishmentmeans_dwc AS ENUM ( |
|
99 |
'cultivated', |
|
100 |
'wild', |
|
101 |
'native', |
|
102 |
'exotic', |
|
103 |
'invasive', |
|
104 |
'escaped from captivity' |
|
105 |
); |
|
106 |
|
|
107 |
|
|
108 |
-- |
|
109 |
-- Name: TYPE establishmentmeans_dwc; Type: COMMENT; Schema: public; Owner: - |
|
110 |
-- |
|
111 |
|
|
112 |
COMMENT ON TYPE establishmentmeans_dwc IS ' |
|
113 |
See <http://rs.tdwg.org/dwc/terms/#establishmentMeans> |
|
114 |
'; |
|
115 |
|
|
116 |
|
|
117 |
-- |
|
118 |
-- Name: growthform; Type: TYPE; Schema: public; Owner: - |
|
119 |
-- |
|
120 |
|
|
121 |
CREATE TYPE growthform AS ENUM ( |
|
122 |
'tree', |
|
123 |
'shrub', |
|
124 |
'liana', |
|
125 |
'vine', |
|
126 |
'herb', |
|
127 |
'hemiepiphyte', |
|
128 |
'epiphyte', |
|
129 |
'grass', |
|
130 |
'forb', |
|
131 |
'moss', |
|
132 |
'lichen', |
|
133 |
'fungus', |
|
134 |
'floating aquatic', |
|
135 |
'submerged aquatic' |
|
136 |
); |
|
137 |
|
|
138 |
|
|
139 |
-- |
|
140 |
-- Name: higher_plant_group; Type: TYPE; Schema: public; Owner: - |
|
141 |
-- |
|
142 |
|
|
143 |
CREATE TYPE higher_plant_group AS ENUM ( |
|
144 |
'all', |
|
145 |
'bryophytes', |
|
146 |
'ferns and allies', |
|
147 |
'flowering plants', |
|
148 |
'gymnosperms (conifers)', |
|
149 |
'gymnosperms (non-conifer)' |
|
150 |
); |
|
151 |
|
|
152 |
|
|
153 |
-- |
|
154 |
-- Name: observationtype; Type: TYPE; Schema: public; Owner: - |
|
155 |
-- |
|
156 |
|
|
157 |
CREATE TYPE observationtype AS ENUM ( |
|
158 |
'plot', |
|
159 |
'specimen' |
|
160 |
); |
|
161 |
|
|
162 |
|
|
163 |
-- |
|
164 |
-- Name: occurrencestatus_dwc; Type: TYPE; Schema: public; Owner: - |
|
165 |
-- |
|
166 |
|
|
167 |
CREATE TYPE occurrencestatus_dwc AS ENUM ( |
|
168 |
'present', |
|
169 |
'absent', |
|
170 |
'common', |
|
171 |
'irregular', |
|
172 |
'rare', |
|
173 |
'doubtful' |
|
174 |
); |
|
175 |
|
|
176 |
|
|
177 |
-- |
|
178 |
-- Name: placerank; Type: TYPE; Schema: public; Owner: - |
|
179 |
-- |
|
180 |
|
|
181 |
CREATE TYPE placerank AS ENUM ( |
|
182 |
'continent', |
|
183 |
'waterBody', |
|
184 |
'islandGroup', |
|
185 |
'island', |
|
186 |
'country', |
|
187 |
'territory', |
|
188 |
'region', |
|
189 |
'stateProvince', |
|
190 |
'county', |
|
191 |
'municipality', |
|
192 |
'village', |
|
193 |
'site' |
|
194 |
); |
|
195 |
|
|
196 |
|
|
197 |
-- |
|
198 |
-- Name: TYPE placerank; Type: COMMENT; Schema: public; Owner: - |
|
199 |
-- |
|
200 |
|
|
201 |
COMMENT ON TYPE placerank IS ' |
|
202 |
county = parish, canton |
|
203 |
municipality = city |
|
204 |
|
|
205 |
From <http://rs.tdwg.org/dwc/terms/#dcindex#dcterms:Location>, <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1415&entity=dba_fielddescription¶ms=1415> |
|
206 |
'; |
|
207 |
|
|
208 |
|
|
209 |
-- |
|
210 |
-- Name: rankedplacename; Type: TYPE; Schema: public; Owner: - |
|
211 |
-- |
|
212 |
|
|
213 |
CREATE TYPE rankedplacename AS ( |
|
214 |
rank placerank, |
|
215 |
verbatimrank text, |
|
216 |
placename text |
|
217 |
); |
|
218 |
|
|
219 |
|
|
220 |
-- |
|
221 |
-- Name: taxonrank; Type: TYPE; Schema: public; Owner: - |
|
222 |
-- |
|
223 |
|
|
224 |
CREATE TYPE taxonrank AS ENUM ( |
|
225 |
'unknown', |
|
226 |
'suprageneric', |
|
227 |
'domain', |
|
228 |
'superkingdom', |
|
229 |
'kingdom', |
|
230 |
'subkingdom', |
|
231 |
'infrakingdom', |
|
232 |
'superphylum', |
|
233 |
'phylum', |
|
234 |
'subphylum', |
|
235 |
'infraphylum', |
|
236 |
'superclass', |
|
237 |
'class', |
|
238 |
'subclass', |
|
239 |
'infraclass', |
|
240 |
'superorder', |
|
241 |
'order', |
|
242 |
'suborder', |
|
243 |
'infraorder', |
|
244 |
'family group', |
|
245 |
'superfamily', |
|
246 |
'family', |
|
247 |
'subfamily', |
|
248 |
'infrafamily', |
|
249 |
'family subdivision', |
|
250 |
'supertribe', |
|
251 |
'tribe', |
|
252 |
'subtribe', |
|
253 |
'infratribe', |
|
254 |
'genus group', |
|
255 |
'genus', |
|
256 |
'subgenus', |
|
257 |
'infragenus', |
|
258 |
'genus subdivision', |
|
259 |
'section', |
|
260 |
'subsection', |
|
261 |
'series', |
|
262 |
'subseries', |
|
263 |
'infrageneric', |
|
264 |
'species aggregate', |
|
265 |
'species group', |
|
266 |
'species', |
|
267 |
'subspecies', |
|
268 |
'subspecific aggregate', |
|
269 |
'below subspecies', |
|
270 |
'infraspecies', |
|
271 |
'biovariety', |
|
272 |
'pathovariety', |
|
273 |
'variety', |
|
274 |
'subvariety', |
|
275 |
'subsubvariety', |
|
276 |
'forma', |
|
277 |
'subforma', |
|
278 |
'subsubforma', |
|
279 |
'special forma', |
|
280 |
'infraspecific', |
|
281 |
'candidate', |
|
282 |
'cultivated plants', |
|
283 |
'cultivar', |
|
284 |
'convar', |
|
285 |
'grex', |
|
286 |
'cultivar group', |
|
287 |
'graft-chimaera', |
|
288 |
'denomination class' |
|
289 |
); |
|
290 |
|
|
291 |
|
|
292 |
-- |
|
293 |
-- Name: TYPE taxonrank; Type: COMMENT; Schema: public; Owner: - |
|
294 |
-- |
|
295 |
|
|
296 |
COMMENT ON TYPE taxonrank IS ' |
|
297 |
From <http://www.tdwg.org/standards/117/download/> |
|
298 |
'; |
|
299 |
|
|
300 |
|
|
301 |
-- |
|
302 |
-- Name: rankedtaxonname; Type: TYPE; Schema: public; Owner: - |
|
303 |
-- |
|
304 |
|
|
305 |
CREATE TYPE rankedtaxonname AS ( |
|
306 |
rank taxonrank, |
|
307 |
verbatimrank text, |
|
308 |
taxonname text |
|
309 |
); |
|
310 |
|
|
311 |
|
|
312 |
-- |
|
313 |
-- Name: relationship; Type: TYPE; Schema: public; Owner: - |
|
314 |
-- |
|
315 |
|
|
316 |
CREATE TYPE relationship AS ENUM ( |
|
317 |
'is congruent to', |
|
318 |
'is not congruent to', |
|
319 |
'is included in', |
|
320 |
'is not included in', |
|
321 |
'overlaps', |
|
322 |
'does not overlap', |
|
323 |
'is child taxon of', |
|
324 |
'is anamorph of', |
|
325 |
'is teleomorph of', |
|
326 |
'is hybrid child of', |
|
327 |
'is ambiregnal of', |
|
328 |
'is vernacular for' |
|
329 |
); |
|
330 |
|
|
331 |
|
|
332 |
-- |
|
333 |
-- Name: role; Type: TYPE; Schema: public; Owner: - |
|
334 |
-- |
|
335 |
|
|
336 |
CREATE TYPE role AS ENUM ( |
|
337 |
'unknown', |
|
338 |
'advisor', |
|
339 |
'author', |
|
340 |
'co-principal investigator', |
|
341 |
'collector', |
|
342 |
'computer', |
|
343 |
'contact', |
|
344 |
'contributor', |
|
345 |
'custodian/steward', |
|
346 |
'editor', |
|
347 |
'identifier', |
|
348 |
'originator', |
|
349 |
'performer', |
|
350 |
'principal investigator', |
|
351 |
'recipient', |
|
352 |
'reviewer', |
|
353 |
'technician' |
|
354 |
); |
|
355 |
|
|
356 |
|
|
357 |
-- |
|
358 |
-- Name: TYPE role; Type: COMMENT; Schema: public; Owner: - |
|
359 |
-- |
|
360 |
|
|
361 |
COMMENT ON TYPE role IS ' |
|
362 |
From <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1331&entity=dba_fielddescription¶ms=1331>, <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=projectcontributor&entity=dba_tabledescription&where=where_tablename#ROLE_ID>, and misc terms. |
|
363 |
'; |
|
364 |
|
|
365 |
|
|
366 |
-- |
|
367 |
-- Name: schema_anchor; Type: TYPE; Schema: public; Owner: - |
|
368 |
-- |
|
369 |
|
|
370 |
CREATE TYPE schema_anchor AS ( |
|
371 |
); |
|
372 |
|
|
373 |
|
|
374 |
-- |
|
375 |
-- Name: TYPE schema_anchor; Type: COMMENT; Schema: public; Owner: - |
|
376 |
-- |
|
377 |
|
|
378 |
COMMENT ON TYPE schema_anchor IS 'used with schema_anchor params'; |
|
379 |
|
|
380 |
|
|
381 |
-- |
|
382 |
-- Name: sourcetype; Type: TYPE; Schema: public; Owner: - |
|
383 |
-- |
|
384 |
|
|
385 |
CREATE TYPE sourcetype AS ENUM ( |
|
386 |
'herbarium', |
|
387 |
'primary database', |
|
388 |
'aggregator', |
|
389 |
'book', |
|
390 |
'article', |
|
391 |
'chapter', |
|
392 |
'conference proceedings', |
|
393 |
'dissertation', |
|
394 |
'edited book', |
|
395 |
'generic', |
|
396 |
'journal', |
|
397 |
'manuscript', |
|
398 |
'personal communication', |
|
399 |
'presentation', |
|
400 |
'report', |
|
401 |
'thesis', |
|
402 |
'website' |
|
403 |
); |
|
404 |
|
|
405 |
|
|
406 |
-- |
|
407 |
-- Name: TYPE sourcetype; Type: COMMENT; Schema: public; Owner: - |
|
408 |
-- |
|
409 |
|
|
410 |
COMMENT ON TYPE sourcetype IS ' |
|
411 |
From <https://projects.nceas.ucsb.edu/nceas/attachments/download/428/bien_web_datasource_schema.sql>, <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1300&entity=dba_fielddescription¶ms=1300>, <http://vegbiendev.nceas.ucsb.edu/phppgadmin/display.php?server=localhost%3A5432%3Aallow&database=vegbien&schema=VegBank&table=source&subject=table#sourcetype> |
|
412 |
'; |
|
413 |
|
|
414 |
|
|
415 |
-- |
|
416 |
-- Name: taxonclass; Type: TYPE; Schema: public; Owner: - |
|
417 |
-- |
|
418 |
|
|
419 |
CREATE TYPE taxonclass AS ENUM ( |
|
420 |
'tree', |
|
421 |
'shrub', |
|
422 |
'liana', |
|
423 |
'vine', |
|
424 |
'herb', |
|
425 |
'hemiepiphyte', |
|
426 |
'epiphyte', |
|
427 |
'grass', |
|
428 |
'forb', |
|
429 |
'moss', |
|
430 |
'lichen', |
|
431 |
'fungus', |
|
432 |
'floating aquatic', |
|
433 |
'submerged aquatic', |
|
434 |
'cultivated', |
|
435 |
'wild', |
|
436 |
'native', |
|
437 |
'exotic', |
|
438 |
'invasive', |
|
439 |
'escaped from captivity', |
|
440 |
'dominant', |
|
441 |
'vascular', |
|
442 |
'woody' |
|
443 |
); |
|
444 |
|
|
445 |
|
|
446 |
-- |
|
447 |
-- Name: TYPE taxonclass; Type: COMMENT; Schema: public; Owner: - |
|
448 |
-- |
|
449 |
|
|
450 |
COMMENT ON TYPE taxonclass IS ' |
|
451 |
= growthform + establishmentmeans_dwc + some others |
|
452 |
'; |
|
453 |
|
|
454 |
|
|
455 |
-- |
|
456 |
-- Name: taxonomic_status; Type: TYPE; Schema: public; Owner: - |
|
457 |
-- |
|
458 |
|
|
459 |
CREATE TYPE taxonomic_status AS ENUM ( |
|
460 |
'No opinion', |
|
461 |
'Accepted', |
|
462 |
'Synonym', |
|
463 |
'Illegitimate', |
|
464 |
'Invalid' |
|
465 |
); |
|
466 |
|
|
467 |
|
|
468 |
-- |
|
469 |
-- Name: TYPE taxonomic_status; Type: COMMENT; Schema: public; Owner: - |
|
470 |
-- |
|
471 |
|
|
472 |
COMMENT ON TYPE taxonomic_status IS ' |
|
473 |
See <http://tnrs.iplantcollaborative.org/instructions.html#Status> |
|
474 |
'; |
|
475 |
|
|
476 |
|
|
477 |
SET search_path = public_validations, pg_catalog; |
|
478 |
|
|
479 |
-- |
|
480 |
-- Name: keys_~type._plots_01_count_of_projects; Type: TYPE; Schema: public_validations; Owner: - |
|
481 |
-- |
|
482 |
|
|
483 |
CREATE TYPE "keys_~type._plots_01_count_of_projects" AS ( |
|
484 |
); |
|
485 |
|
|
486 |
|
|
487 |
-- |
|
488 |
-- Name: keys_~type._plots_02_list_of_project_names; Type: TYPE; Schema: public_validations; Owner: - |
|
489 |
-- |
|
490 |
|
|
491 |
CREATE TYPE "keys_~type._plots_02_list_of_project_names" AS ( |
|
492 |
project_name text |
|
493 |
); |
|
494 |
|
|
495 |
|
|
496 |
-- |
|
497 |
-- Name: keys_~type._plots_03_count_of_all_plots_in_this_source; Type: TYPE; Schema: public_validations; Owner: - |
|
498 |
-- |
|
499 |
|
|
500 |
CREATE TYPE "keys_~type._plots_03_count_of_all_plots_in_this_source" AS ( |
|
501 |
); |
|
502 |
|
|
503 |
|
|
504 |
-- |
|
505 |
-- Name: keys_~type._plots_04_count_of_plots_in_each_project_in_this_sou; Type: TYPE; Schema: public_validations; Owner: - |
|
506 |
-- |
|
507 |
|
|
508 |
CREATE TYPE "keys_~type._plots_04_count_of_plots_in_each_project_in_this_sou" AS ( |
|
509 |
project_name text |
|
510 |
); |
|
511 |
|
|
512 |
|
|
513 |
-- |
|
514 |
-- Name: keys_~type._plots_05_list_of_plot_codes_by_project; Type: TYPE; Schema: public_validations; Owner: - |
|
515 |
-- |
|
516 |
|
|
517 |
CREATE TYPE "keys_~type._plots_05_list_of_plot_codes_by_project" AS ( |
|
518 |
project_name text, |
|
519 |
plot_code text |
|
520 |
); |
|
521 |
|
|
522 |
|
|
523 |
-- |
|
524 |
-- Name: keys_~type._plots_06_list_of_plots_with_stem_measurements; Type: TYPE; Schema: public_validations; Owner: - |
|
525 |
-- |
|
526 |
|
|
527 |
CREATE TYPE "keys_~type._plots_06_list_of_plots_with_stem_measurements" AS ( |
|
528 |
project_name text, |
|
529 |
plot_code text |
|
530 |
); |
|
531 |
|
|
532 |
|
|
533 |
-- |
|
534 |
-- Name: keys_~type._plots_06a_list_of_stems; Type: TYPE; Schema: public_validations; Owner: - |
|
535 |
-- |
|
536 |
|
|
537 |
CREATE TYPE "keys_~type._plots_06a_list_of_stems" AS ( |
|
538 |
project_name text, |
|
539 |
plot_code text, |
|
540 |
stem_id text |
|
541 |
); |
|
542 |
|
|
543 |
|
|
544 |
-- |
|
545 |
-- Name: keys_~type._plots_07_list_of_plots_which_use_counts_of_indiv_pe; Type: TYPE; Schema: public_validations; Owner: - |
|
546 |
-- |
|
547 |
|
|
548 |
CREATE TYPE "keys_~type._plots_07_list_of_plots_which_use_counts_of_indiv_pe" AS ( |
|
549 |
project_name text, |
|
550 |
plot_code text |
|
551 |
); |
|
552 |
|
|
553 |
|
|
554 |
-- |
|
555 |
-- Name: keys_~type._plots_08_list_of_plots_which_use_percent_cover; Type: TYPE; Schema: public_validations; Owner: - |
|
556 |
-- |
|
557 |
|
|
558 |
CREATE TYPE "keys_~type._plots_08_list_of_plots_which_use_percent_cover" AS ( |
|
559 |
project_name text, |
|
560 |
plot_code text |
|
561 |
); |
|
562 |
|
|
563 |
|
|
564 |
-- |
|
565 |
-- Name: keys_~type._plots_09_list_of_plots_which_use_line_intercept; Type: TYPE; Schema: public_validations; Owner: - |
|
566 |
-- |
|
567 |
|
|
568 |
CREATE TYPE "keys_~type._plots_09_list_of_plots_which_use_line_intercept" AS ( |
|
569 |
project_name text, |
|
570 |
plot_code text |
|
571 |
); |
|
572 |
|
|
573 |
|
|
574 |
-- |
|
575 |
-- Name: keys_~type._plots_10_count_of_individuals_per_plot_in_each_proj; Type: TYPE; Schema: public_validations; Owner: - |
|
576 |
-- |
|
577 |
|
|
578 |
CREATE TYPE "keys_~type._plots_10_count_of_individuals_per_plot_in_each_proj" AS ( |
|
579 |
project_name text, |
|
580 |
plot_code text |
|
581 |
); |
|
582 |
|
|
583 |
|
|
584 |
-- |
|
585 |
-- Name: keys_~type._plots_10a_aggregate_observation_individual_counts; Type: TYPE; Schema: public_validations; Owner: - |
|
586 |
-- |
|
587 |
|
|
588 |
CREATE TYPE "keys_~type._plots_10a_aggregate_observation_individual_counts" AS ( |
|
589 |
project_name text, |
|
590 |
plot_code text, |
|
591 |
individual_id text |
|
592 |
); |
|
593 |
|
|
594 |
|
|
595 |
-- |
|
596 |
-- Name: keys_~type._plots_11_count_of_stems_per_plot_in_each_project; Type: TYPE; Schema: public_validations; Owner: - |
|
597 |
-- |
|
598 |
|
|
599 |
CREATE TYPE "keys_~type._plots_11_count_of_stems_per_plot_in_each_project" AS ( |
|
600 |
project_name text, |
|
601 |
plot_code text |
|
602 |
); |
|
603 |
|
|
604 |
|
|
605 |
-- |
|
606 |
-- Name: keys_~type._plots_12_count_of_verbatim_taxa_per_plot_in_each_pr; Type: TYPE; Schema: public_validations; Owner: - |
|
607 |
-- |
|
608 |
|
|
609 |
CREATE TYPE "keys_~type._plots_12_count_of_verbatim_taxa_per_plot_in_each_pr" AS ( |
|
610 |
project_name text, |
|
611 |
plot_code text |
|
612 |
); |
|
613 |
|
|
614 |
|
|
615 |
-- |
|
616 |
-- Name: keys_~type._plots_13_list_of_distinct_verbatim_taxa_in_each_plo; Type: TYPE; Schema: public_validations; Owner: - |
|
617 |
-- |
|
618 |
|
|
619 |
CREATE TYPE "keys_~type._plots_13_list_of_distinct_verbatim_taxa_in_each_plo" AS ( |
|
620 |
project_name text, |
|
621 |
plot_code text, |
|
622 |
taxon text |
|
623 |
); |
|
624 |
|
|
625 |
|
|
626 |
-- |
|
627 |
-- Name: keys_~type._plots_14_count_of_indiv_per_verbatim_taxon_per_plot; Type: TYPE; Schema: public_validations; Owner: - |
|
628 |
-- |
|
629 |
|
|
630 |
CREATE TYPE "keys_~type._plots_14_count_of_indiv_per_verbatim_taxon_per_plot" AS ( |
|
631 |
project_name text, |
|
632 |
plot_code text, |
|
633 |
taxon text |
|
634 |
); |
|
635 |
|
|
636 |
|
|
637 |
-- |
|
638 |
-- Name: keys_~type._plots_15_pct_cover_of_each_verb_taxon_in_each_plot_; Type: TYPE; Schema: public_validations; Owner: - |
|
639 |
-- |
|
640 |
|
|
641 |
CREATE TYPE "keys_~type._plots_15_pct_cover_of_each_verb_taxon_in_each_plot_" AS ( |
|
642 |
project_name text, |
|
643 |
plot_code text, |
|
644 |
taxon text, |
|
645 |
totalpercentcover double precision |
|
646 |
); |
|
647 |
|
|
648 |
|
|
649 |
-- |
|
650 |
-- Name: keys_~type._plots_16_intercepts_for_each_verb_taxon_in_each_plo; Type: TYPE; Schema: public_validations; Owner: - |
|
651 |
-- |
|
652 |
|
|
653 |
CREATE TYPE "keys_~type._plots_16_intercepts_for_each_verb_taxon_in_each_plo" AS ( |
|
654 |
project_name text, |
|
655 |
plot_code text, |
|
656 |
taxon text |
|
657 |
); |
|
658 |
|
|
659 |
|
|
660 |
-- |
|
661 |
-- Name: keys_~type._plots_17_count_of_subplots_per_plot_for_each_projec; Type: TYPE; Schema: public_validations; Owner: - |
|
662 |
-- |
|
663 |
|
|
664 |
CREATE TYPE "keys_~type._plots_17_count_of_subplots_per_plot_for_each_projec" AS ( |
|
665 |
project_name text, |
|
666 |
plot_code text |
|
667 |
); |
|
668 |
|
|
669 |
|
|
670 |
-- |
|
671 |
-- Name: keys_~type._plots_18_list_of_subplots_codes_for_each_plot_for_e; Type: TYPE; Schema: public_validations; Owner: - |
|
672 |
-- |
|
673 |
|
|
674 |
CREATE TYPE "keys_~type._plots_18_list_of_subplots_codes_for_each_plot_for_e" AS ( |
|
675 |
project_name text, |
|
676 |
plot_code text, |
|
677 |
subplot_code text |
|
678 |
); |
|
679 |
|
|
680 |
|
|
681 |
-- |
|
682 |
-- Name: keys_~type._plots_19_count_of_censuses_per_plot_in_each_project; Type: TYPE; Schema: public_validations; Owner: - |
|
683 |
-- |
|
684 |
|
|
685 |
CREATE TYPE "keys_~type._plots_19_count_of_censuses_per_plot_in_each_project" AS ( |
|
686 |
project_name text, |
|
687 |
plot_code text |
|
688 |
); |
|
689 |
|
|
690 |
|
|
691 |
-- |
|
692 |
-- Name: TYPE "keys_~type._plots_19_count_of_censuses_per_plot_in_each_project"; Type: COMMENT; Schema: public_validations; Owner: - |
|
693 |
-- |
|
694 |
|
|
695 |
COMMENT ON TYPE "keys_~type._plots_19_count_of_censuses_per_plot_in_each_project" IS ' |
|
696 |
autogenerated |
|
697 |
'; |
|
698 |
|
|
699 |
|
|
700 |
-- |
|
701 |
-- Name: keys_~type._specimens_01_count_of_total_records_specimens_in_so; Type: TYPE; Schema: public_validations; Owner: - |
|
702 |
-- |
|
703 |
|
|
704 |
CREATE TYPE "keys_~type._specimens_01_count_of_total_records_specimens_in_so" AS ( |
|
705 |
); |
|
706 |
|
|
707 |
|
|
708 |
-- |
|
709 |
-- Name: TYPE "keys_~type._specimens_01_count_of_total_records_specimens_in_so"; Type: COMMENT; Schema: public_validations; Owner: - |
|
710 |
-- |
|
711 |
|
|
712 |
COMMENT ON TYPE "keys_~type._specimens_01_count_of_total_records_specimens_in_so" IS ' |
|
713 |
autogenerated |
|
714 |
'; |
|
715 |
|
|
716 |
|
|
717 |
-- |
|
718 |
-- Name: keys_~type._specimens_02_count_of_unique_verbatim_families; Type: TYPE; Schema: public_validations; Owner: - |
|
719 |
-- |
|
720 |
|
|
721 |
CREATE TYPE "keys_~type._specimens_02_count_of_unique_verbatim_families" AS ( |
|
722 |
); |
|
723 |
|
|
724 |
|
|
725 |
-- |
|
726 |
-- Name: TYPE "keys_~type._specimens_02_count_of_unique_verbatim_families"; Type: COMMENT; Schema: public_validations; Owner: - |
|
727 |
-- |
|
728 |
|
|
729 |
COMMENT ON TYPE "keys_~type._specimens_02_count_of_unique_verbatim_families" IS ' |
|
730 |
autogenerated |
|
731 |
'; |
|
732 |
|
|
733 |
|
|
734 |
-- |
|
735 |
-- Name: keys_~type._specimens_03_list_of_verbatim_families; Type: TYPE; Schema: public_validations; Owner: - |
|
736 |
-- |
|
737 |
|
|
738 |
CREATE TYPE "keys_~type._specimens_03_list_of_verbatim_families" AS ( |
|
739 |
family text |
|
740 |
); |
|
741 |
|
|
742 |
|
|
743 |
-- |
|
744 |
-- Name: TYPE "keys_~type._specimens_03_list_of_verbatim_families"; Type: COMMENT; Schema: public_validations; Owner: - |
|
745 |
-- |
|
746 |
|
|
747 |
COMMENT ON TYPE "keys_~type._specimens_03_list_of_verbatim_families" IS ' |
|
748 |
autogenerated |
|
749 |
'; |
|
750 |
|
|
751 |
|
|
752 |
-- |
|
753 |
-- Name: keys_~type._specimens_04_count_of_species_binomials; Type: TYPE; Schema: public_validations; Owner: - |
|
754 |
-- |
|
755 |
|
|
756 |
CREATE TYPE "keys_~type._specimens_04_count_of_species_binomials" AS ( |
|
757 |
); |
|
758 |
|
|
759 |
|
|
760 |
-- |
|
761 |
-- Name: TYPE "keys_~type._specimens_04_count_of_species_binomials"; Type: COMMENT; Schema: public_validations; Owner: - |
|
762 |
-- |
|
763 |
|
|
764 |
COMMENT ON TYPE "keys_~type._specimens_04_count_of_species_binomials" IS ' |
|
765 |
autogenerated |
|
766 |
'; |
|
767 |
|
|
768 |
|
|
769 |
-- |
|
770 |
-- Name: keys_~type._specimens_05_list_of_species_binomials; Type: TYPE; Schema: public_validations; Owner: - |
|
771 |
-- |
|
772 |
|
|
773 |
CREATE TYPE "keys_~type._specimens_05_list_of_species_binomials" AS ( |
|
774 |
species_binomial text |
|
775 |
); |
|
776 |
|
|
777 |
|
|
778 |
-- |
|
779 |
-- Name: TYPE "keys_~type._specimens_05_list_of_species_binomials"; Type: COMMENT; Schema: public_validations; Owner: - |
|
780 |
-- |
|
781 |
|
|
782 |
COMMENT ON TYPE "keys_~type._specimens_05_list_of_species_binomials" IS ' |
|
783 |
autogenerated |
|
784 |
'; |
|
785 |
|
|
786 |
|
|
787 |
-- |
|
788 |
-- Name: keys_~type._specimens_06_count_of_unique_verb_subsp_taxa_with_a; Type: TYPE; Schema: public_validations; Owner: - |
|
789 |
-- |
|
790 |
|
|
791 |
CREATE TYPE "keys_~type._specimens_06_count_of_unique_verb_subsp_taxa_with_a" AS ( |
|
792 |
); |
|
793 |
|
|
794 |
|
|
795 |
-- |
|
796 |
-- Name: TYPE "keys_~type._specimens_06_count_of_unique_verb_subsp_taxa_with_a"; Type: COMMENT; Schema: public_validations; Owner: - |
|
797 |
-- |
|
798 |
|
|
799 |
COMMENT ON TYPE "keys_~type._specimens_06_count_of_unique_verb_subsp_taxa_with_a" IS ' |
|
800 |
autogenerated |
|
801 |
'; |
|
802 |
|
|
803 |
|
|
804 |
-- |
|
805 |
-- Name: keys_~type._specimens_07_list_of_verbatim_subspecific_taxa_with; Type: TYPE; Schema: public_validations; Owner: - |
|
806 |
-- |
|
807 |
|
|
808 |
CREATE TYPE "keys_~type._specimens_07_list_of_verbatim_subspecific_taxa_with" AS ( |
|
809 |
taxon_name_with_author text |
|
810 |
); |
|
811 |
|
|
812 |
|
|
813 |
-- |
|
814 |
-- Name: TYPE "keys_~type._specimens_07_list_of_verbatim_subspecific_taxa_with"; Type: COMMENT; Schema: public_validations; Owner: - |
|
815 |
-- |
|
816 |
|
|
817 |
COMMENT ON TYPE "keys_~type._specimens_07_list_of_verbatim_subspecific_taxa_with" IS ' |
|
818 |
autogenerated |
|
819 |
'; |
|
820 |
|
|
821 |
|
|
822 |
-- |
|
823 |
-- Name: keys_~type._specimens_08_count_of_unique_verbatim_author_taxa_w; Type: TYPE; Schema: public_validations; Owner: - |
|
824 |
-- |
|
825 |
|
|
826 |
CREATE TYPE "keys_~type._specimens_08_count_of_unique_verbatim_author_taxa_w" AS ( |
|
827 |
); |
|
828 |
|
|
829 |
|
|
830 |
-- |
|
831 |
-- Name: TYPE "keys_~type._specimens_08_count_of_unique_verbatim_author_taxa_w"; Type: COMMENT; Schema: public_validations; Owner: - |
|
832 |
-- |
|
833 |
|
|
834 |
COMMENT ON TYPE "keys_~type._specimens_08_count_of_unique_verbatim_author_taxa_w" IS ' |
|
835 |
autogenerated |
|
836 |
'; |
|
837 |
|
|
838 |
|
|
839 |
-- |
|
840 |
-- Name: keys_~type._specimens_09_list_of_unique_verbatim_author_taxa_wi; Type: TYPE; Schema: public_validations; Owner: - |
|
841 |
-- |
|
842 |
|
|
843 |
CREATE TYPE "keys_~type._specimens_09_list_of_unique_verbatim_author_taxa_wi" AS ( |
|
844 |
taxon_name_with_author text |
|
845 |
); |
|
846 |
|
|
847 |
|
|
848 |
-- |
|
849 |
-- Name: TYPE "keys_~type._specimens_09_list_of_unique_verbatim_author_taxa_wi"; Type: COMMENT; Schema: public_validations; Owner: - |
|
850 |
-- |
|
851 |
|
|
852 |
COMMENT ON TYPE "keys_~type._specimens_09_list_of_unique_verbatim_author_taxa_wi" IS ' |
|
853 |
autogenerated |
|
854 |
'; |
|
855 |
|
|
856 |
|
|
857 |
-- |
|
858 |
-- Name: keys_~type._specimens_10_count_number_of_records_by_institution; Type: TYPE; Schema: public_validations; Owner: - |
|
859 |
-- |
|
860 |
|
|
861 |
CREATE TYPE "keys_~type._specimens_10_count_number_of_records_by_institution" AS ( |
|
862 |
specimen_duplicate_institutions text |
|
863 |
); |
|
864 |
|
|
865 |
|
|
866 |
-- |
|
867 |
-- Name: TYPE "keys_~type._specimens_10_count_number_of_records_by_institution"; Type: COMMENT; Schema: public_validations; Owner: - |
|
868 |
-- |
|
869 |
|
|
870 |
COMMENT ON TYPE "keys_~type._specimens_10_count_number_of_records_by_institution" IS ' |
|
871 |
autogenerated |
|
872 |
'; |
|
873 |
|
|
874 |
|
|
875 |
-- |
|
876 |
-- Name: keys_~type._specimens_11_list_of_three_standard_political_divis; Type: TYPE; Schema: public_validations; Owner: - |
|
877 |
-- |
|
878 |
|
|
879 |
CREATE TYPE "keys_~type._specimens_11_list_of_three_standard_political_divis" AS ( |
|
880 |
country text, |
|
881 |
"stateProvince" text, |
|
882 |
county text |
|
883 |
); |
|
884 |
|
|
885 |
|
|
886 |
-- |
|
887 |
-- Name: TYPE "keys_~type._specimens_11_list_of_three_standard_political_divis"; Type: COMMENT; Schema: public_validations; Owner: - |
|
888 |
-- |
|
889 |
|
|
890 |
COMMENT ON TYPE "keys_~type._specimens_11_list_of_three_standard_political_divis" IS ' |
|
891 |
autogenerated |
|
892 |
'; |
|
893 |
|
|
894 |
|
|
895 |
-- |
|
896 |
-- Name: keys_~type._specimens_12_distinct_collector_name_collect_num_da; Type: TYPE; Schema: public_validations; Owner: - |
|
897 |
-- |
|
898 |
|
|
899 |
CREATE TYPE "keys_~type._specimens_12_distinct_collector_name_collect_num_da" AS ( |
|
900 |
"collectorName" text, |
|
901 |
"collectionNumber" text, |
|
902 |
"dateCollected" text |
|
903 |
); |
|
904 |
|
|
905 |
|
|
906 |
-- |
|
907 |
-- Name: TYPE "keys_~type._specimens_12_distinct_collector_name_collect_num_da"; Type: COMMENT; Schema: public_validations; Owner: - |
|
908 |
-- |
|
909 |
|
|
910 |
COMMENT ON TYPE "keys_~type._specimens_12_distinct_collector_name_collect_num_da" IS ' |
Also available in: Unified diff
schemas/Makefile: vegbien.sql: also include geoscrub, TNRS schemas, as requested in the 2014-04-10 conference call (wiki.vegpath.org/2014-04-10_conference_call#VegBIEN-schema). this involves having a separate public_.sql file for restoring the public schema.