Revision 1335
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/NYBG/test/VegBIEN.specimens.xml.ref | ||
|---|---|---|
| 45 | 45 |
<plantconcept> |
| 46 | 46 |
<plantname_id> |
| 47 | 47 |
<plantname> |
| 48 |
<rank>Authority</rank>
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| 48 |
<rank>authority</rank>
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| 49 | 49 |
<plantname>(Raddi) Kuntze</plantname> |
| 50 | 50 |
</plantname> |
| 51 | 51 |
</plantname_id> |
| ... | ... | |
| 61 | 61 |
<plantconcept> |
| 62 | 62 |
<plantname_id> |
| 63 | 63 |
<plantname> |
| 64 |
<rank>Binomial</rank>
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| 64 |
<rank>binomial</rank>
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| 65 | 65 |
<plantname>Cariniana estrellensis (Raddi) Kuntze</plantname> |
| 66 | 66 |
</plantname> |
| 67 | 67 |
</plantname_id> |
| ... | ... | |
| 77 | 77 |
<plantconcept> |
| 78 | 78 |
<plantname_id> |
| 79 | 79 |
<plantname> |
| 80 |
<rank>Family</rank>
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| 80 |
<rank>family</rank>
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| 81 | 81 |
<plantname>Lecythidaceae</plantname> |
| 82 | 82 |
</plantname> |
| 83 | 83 |
</plantname_id> |
| ... | ... | |
| 93 | 93 |
<plantconcept> |
| 94 | 94 |
<plantname_id> |
| 95 | 95 |
<plantname> |
| 96 |
<rank>Genus</rank>
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| 96 |
<rank>genus</rank>
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| 97 | 97 |
<plantname>Cariniana</plantname> |
| 98 | 98 |
</plantname> |
| 99 | 99 |
</plantname_id> |
| ... | ... | |
| 109 | 109 |
<plantconcept> |
| 110 | 110 |
<plantname_id> |
| 111 | 111 |
<plantname> |
| 112 |
<rank>Kingdom</rank>
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| 112 |
<rank>kingdom</rank>
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|
| 113 | 113 |
<plantname>Plantae</plantname> |
| 114 | 114 |
</plantname> |
| 115 | 115 |
</plantname_id> |
| ... | ... | |
| 125 | 125 |
<plantconcept> |
| 126 | 126 |
<plantname_id> |
| 127 | 127 |
<plantname> |
| 128 |
<rank>Species</rank>
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|
| 128 |
<rank>species</rank>
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|
| 129 | 129 |
<plantname>estrellensis</plantname> |
| 130 | 130 |
</plantname> |
| 131 | 131 |
</plantname_id> |
| ... | ... | |
| 141 | 141 |
<plantconcept> |
| 142 | 142 |
<plantname_id> |
| 143 | 143 |
<plantname> |
| 144 |
<rank>Subkingdom</rank>
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|
| 144 |
<rank>subkingdom</rank>
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|
| 145 | 145 |
<plantname>Magnoliophyta (flowering plants)</plantname> |
| 146 | 146 |
</plantname> |
| 147 | 147 |
</plantname_id> |
| ... | ... | |
| 200 | 200 |
<plantconcept> |
| 201 | 201 |
<plantname_id> |
| 202 | 202 |
<plantname> |
| 203 |
<rank>Binomial</rank>
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| 203 |
<rank>binomial</rank>
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| 204 | 204 |
<plantname>Scrophulariaceae</plantname> |
| 205 | 205 |
</plantname> |
| 206 | 206 |
</plantname_id> |
| ... | ... | |
| 216 | 216 |
<plantconcept> |
| 217 | 217 |
<plantname_id> |
| 218 | 218 |
<plantname> |
| 219 |
<rank>Family</rank>
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| 219 |
<rank>family</rank>
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| 220 | 220 |
<plantname>Scrophulariaceae</plantname> |
| 221 | 221 |
</plantname> |
| 222 | 222 |
</plantname_id> |
| ... | ... | |
| 232 | 232 |
<plantconcept> |
| 233 | 233 |
<plantname_id> |
| 234 | 234 |
<plantname> |
| 235 |
<rank>Kingdom</rank>
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| 235 |
<rank>kingdom</rank>
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| 236 | 236 |
<plantname>Plantae</plantname> |
| 237 | 237 |
</plantname> |
| 238 | 238 |
</plantname_id> |
| ... | ... | |
| 248 | 248 |
<plantconcept> |
| 249 | 249 |
<plantname_id> |
| 250 | 250 |
<plantname> |
| 251 |
<rank>Subkingdom</rank>
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| 251 |
<rank>subkingdom</rank>
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|
| 252 | 252 |
<plantname>Magnoliophyta (flowering plants)</plantname> |
| 253 | 253 |
</plantname> |
| 254 | 254 |
</plantname_id> |
| inputs/NYBG/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 46 | 46 |
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 47 | 47 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 48 | 48 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 49 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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| 50 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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| 51 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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| 52 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
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| 53 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
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| 54 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
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| 55 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
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| 56 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
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| 57 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/2",,120
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| 58 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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| 59 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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| 60 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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| 61 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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| 62 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
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| 63 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
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| 64 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
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| 65 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
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| 66 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
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| 67 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
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| 68 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
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| 69 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
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| 70 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
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| 71 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
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| 72 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
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| 73 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
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| 74 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
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| 75 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
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| 76 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
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| 77 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
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| 78 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
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| 79 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
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| 49 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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| 50 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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| 51 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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| 52 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
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| 53 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
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| 54 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
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| 55 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
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| 56 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
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| 57 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/2",,120
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| 58 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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| 59 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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| 60 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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| 61 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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| 62 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
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| 63 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
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| 64 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
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| 65 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
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| 66 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
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| 67 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
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| 68 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
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| 69 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
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| 70 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
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| 71 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
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| 72 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
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| 73 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
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| 74 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
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| 75 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
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| 76 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
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| 77 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
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| 78 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
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| 79 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
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| 80 | 80 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 81 | 81 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 82 | 82 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| inputs/SALVIAS/test/VegBIEN.organisms.xml.ref | ||
|---|---|---|
| 48 | 48 |
<plantconcept> |
| 49 | 49 |
<plantname_id> |
| 50 | 50 |
<plantname> |
| 51 |
<rank>Authority</rank>
|
|
| 51 |
<rank>authority</rank>
|
|
| 52 | 52 |
<plantname>Burret</plantname> |
| 53 | 53 |
</plantname> |
| 54 | 54 |
</plantname_id> |
| ... | ... | |
| 63 | 63 |
<plantconcept> |
| 64 | 64 |
<plantname_id> |
| 65 | 65 |
<plantname> |
| 66 |
<rank>Family</rank>
|
|
| 66 |
<rank>family</rank>
|
|
| 67 | 67 |
<plantname>Arecaceae</plantname> |
| 68 | 68 |
</plantname> |
| 69 | 69 |
</plantname_id> |
| ... | ... | |
| 78 | 78 |
<plantconcept> |
| 79 | 79 |
<plantname_id> |
| 80 | 80 |
<plantname> |
| 81 |
<rank>Genus</rank>
|
|
| 81 |
<rank>genus</rank>
|
|
| 82 | 82 |
<plantname>Geonoma</plantname> |
| 83 | 83 |
</plantname> |
| 84 | 84 |
</plantname_id> |
| ... | ... | |
| 93 | 93 |
<plantconcept> |
| 94 | 94 |
<plantname_id> |
| 95 | 95 |
<plantname> |
| 96 |
<rank>Species</rank>
|
|
| 96 |
<rank>species</rank>
|
|
| 97 | 97 |
<plantname>seleri</plantname> |
| 98 | 98 |
</plantname> |
| 99 | 99 |
</plantname_id> |
| ... | ... | |
| 108 | 108 |
<plantconcept> |
| 109 | 109 |
<plantname_id> |
| 110 | 110 |
<plantname> |
| 111 |
<rank>Binomial</rank>
|
|
| 111 |
<rank>binomial</rank>
|
|
| 112 | 112 |
<plantname>Geonoma seleri</plantname> |
| 113 | 113 |
</plantname> |
| 114 | 114 |
</plantname_id> |
| ... | ... | |
| 124 | 124 |
<plantconcept> |
| 125 | 125 |
<plantname_id> |
| 126 | 126 |
<plantname> |
| 127 |
<rank>Family</rank>
|
|
| 127 |
<rank>family</rank>
|
|
| 128 | 128 |
<plantname>Arecaceae</plantname> |
| 129 | 129 |
</plantname> |
| 130 | 130 |
</plantname_id> |
| ... | ... | |
| 183 | 183 |
<plantconcept> |
| 184 | 184 |
<plantname_id> |
| 185 | 185 |
<plantname> |
| 186 |
<rank>Authority</rank>
|
|
| 186 |
<rank>authority</rank>
|
|
| 187 | 187 |
<plantname>Maguire</plantname> |
| 188 | 188 |
</plantname> |
| 189 | 189 |
</plantname_id> |
| ... | ... | |
| 198 | 198 |
<plantconcept> |
| 199 | 199 |
<plantname_id> |
| 200 | 200 |
<plantname> |
| 201 |
<rank>Family</rank>
|
|
| 201 |
<rank>family</rank>
|
|
| 202 | 202 |
<plantname>Clusiaceae</plantname> |
| 203 | 203 |
</plantname> |
| 204 | 204 |
</plantname_id> |
| ... | ... | |
| 213 | 213 |
<plantconcept> |
| 214 | 214 |
<plantname_id> |
| 215 | 215 |
<plantname> |
| 216 |
<rank>Genus</rank>
|
|
| 216 |
<rank>genus</rank>
|
|
| 217 | 217 |
<plantname>Tovomitopsis</plantname> |
| 218 | 218 |
</plantname> |
| 219 | 219 |
</plantname_id> |
| ... | ... | |
| 228 | 228 |
<plantconcept> |
| 229 | 229 |
<plantname_id> |
| 230 | 230 |
<plantname> |
| 231 |
<rank>Species</rank>
|
|
| 231 |
<rank>species</rank>
|
|
| 232 | 232 |
<plantname>allenii</plantname> |
| 233 | 233 |
</plantname> |
| 234 | 234 |
</plantname_id> |
| ... | ... | |
| 243 | 243 |
<plantconcept> |
| 244 | 244 |
<plantname_id> |
| 245 | 245 |
<plantname> |
| 246 |
<rank>Binomial</rank>
|
|
| 246 |
<rank>binomial</rank>
|
|
| 247 | 247 |
<plantname>Tovomitopsis allenii</plantname> |
| 248 | 248 |
</plantname> |
| 249 | 249 |
</plantname_id> |
| ... | ... | |
| 259 | 259 |
<plantconcept> |
| 260 | 260 |
<plantname_id> |
| 261 | 261 |
<plantname> |
| 262 |
<rank>Family</rank>
|
|
| 262 |
<rank>family</rank>
|
|
| 263 | 263 |
<plantname>Clusiaceae</plantname> |
| 264 | 264 |
</plantname> |
| 265 | 265 |
</plantname_id> |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 26 | 26 |
coll_firstname,/aggregateoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 27 | 27 |
coll_lastname,/aggregateoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 28 | 28 |
census_date,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate/_*/date, |
| 29 |
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 30 |
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 31 |
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 32 |
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 33 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
|
|
| 34 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
|
|
| 35 |
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
| 36 |
OrigGenus,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/first",
|
|
| 37 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
|
|
| 38 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 29 |
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 30 |
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 31 |
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 32 |
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 33 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
|
|
| 34 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
|
|
| 35 |
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
| 36 |
OrigGenus,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/first",
|
|
| 37 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
|
|
| 38 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 39 | 39 |
GenAuth,, |
| 40 | 40 |
IsMorpho,, |
| 41 | 41 |
OrigAuth,, |
| inputs/NYBG-CSV/test/VegBIEN.specimens.xml.ref | ||
|---|---|---|
| 45 | 45 |
<plantconcept> |
| 46 | 46 |
<plantname_id> |
| 47 | 47 |
<plantname> |
| 48 |
<rank>Authority</rank>
|
|
| 48 |
<rank>authority</rank>
|
|
| 49 | 49 |
<plantname>(Raddi) Kuntze</plantname> |
| 50 | 50 |
</plantname> |
| 51 | 51 |
</plantname_id> |
| ... | ... | |
| 61 | 61 |
<plantconcept> |
| 62 | 62 |
<plantname_id> |
| 63 | 63 |
<plantname> |
| 64 |
<rank>Binomial</rank>
|
|
| 64 |
<rank>binomial</rank>
|
|
| 65 | 65 |
<plantname>Cariniana estrellensis (Raddi) Kuntze</plantname> |
| 66 | 66 |
</plantname> |
| 67 | 67 |
</plantname_id> |
| ... | ... | |
| 77 | 77 |
<plantconcept> |
| 78 | 78 |
<plantname_id> |
| 79 | 79 |
<plantname> |
| 80 |
<rank>Family</rank>
|
|
| 80 |
<rank>family</rank>
|
|
| 81 | 81 |
<plantname>Lecythidaceae</plantname> |
| 82 | 82 |
</plantname> |
| 83 | 83 |
</plantname_id> |
| ... | ... | |
| 93 | 93 |
<plantconcept> |
| 94 | 94 |
<plantname_id> |
| 95 | 95 |
<plantname> |
| 96 |
<rank>Genus</rank>
|
|
| 96 |
<rank>genus</rank>
|
|
| 97 | 97 |
<plantname>Cariniana</plantname> |
| 98 | 98 |
</plantname> |
| 99 | 99 |
</plantname_id> |
| ... | ... | |
| 109 | 109 |
<plantconcept> |
| 110 | 110 |
<plantname_id> |
| 111 | 111 |
<plantname> |
| 112 |
<rank>Kingdom</rank>
|
|
| 112 |
<rank>kingdom</rank>
|
|
| 113 | 113 |
<plantname>Plantae</plantname> |
| 114 | 114 |
</plantname> |
| 115 | 115 |
</plantname_id> |
| ... | ... | |
| 125 | 125 |
<plantconcept> |
| 126 | 126 |
<plantname_id> |
| 127 | 127 |
<plantname> |
| 128 |
<rank>Species</rank>
|
|
| 128 |
<rank>species</rank>
|
|
| 129 | 129 |
<plantname>estrellensis</plantname> |
| 130 | 130 |
</plantname> |
| 131 | 131 |
</plantname_id> |
| ... | ... | |
| 141 | 141 |
<plantconcept> |
| 142 | 142 |
<plantname_id> |
| 143 | 143 |
<plantname> |
| 144 |
<rank>Subkingdom</rank>
|
|
| 144 |
<rank>subkingdom</rank>
|
|
| 145 | 145 |
<plantname>Magnoliophyta (flowering plants)</plantname> |
| 146 | 146 |
</plantname> |
| 147 | 147 |
</plantname_id> |
| ... | ... | |
| 200 | 200 |
<plantconcept> |
| 201 | 201 |
<plantname_id> |
| 202 | 202 |
<plantname> |
| 203 |
<rank>Binomial</rank>
|
|
| 203 |
<rank>binomial</rank>
|
|
| 204 | 204 |
<plantname>Scrophulariaceae</plantname> |
| 205 | 205 |
</plantname> |
| 206 | 206 |
</plantname_id> |
| ... | ... | |
| 216 | 216 |
<plantconcept> |
| 217 | 217 |
<plantname_id> |
| 218 | 218 |
<plantname> |
| 219 |
<rank>Family</rank>
|
|
| 219 |
<rank>family</rank>
|
|
| 220 | 220 |
<plantname>Scrophulariaceae</plantname> |
| 221 | 221 |
</plantname> |
| 222 | 222 |
</plantname_id> |
| ... | ... | |
| 232 | 232 |
<plantconcept> |
| 233 | 233 |
<plantname_id> |
| 234 | 234 |
<plantname> |
| 235 |
<rank>Kingdom</rank>
|
|
| 235 |
<rank>kingdom</rank>
|
|
| 236 | 236 |
<plantname>Plantae</plantname> |
| 237 | 237 |
</plantname> |
| 238 | 238 |
</plantname_id> |
| ... | ... | |
| 248 | 248 |
<plantconcept> |
| 249 | 249 |
<plantname_id> |
| 250 | 250 |
<plantname> |
| 251 |
<rank>Subkingdom</rank>
|
|
| 251 |
<rank>subkingdom</rank>
|
|
| 252 | 252 |
<plantname>Magnoliophyta (flowering plants)</plantname> |
| 253 | 253 |
</plantname> |
| 254 | 254 |
</plantname_id> |
| inputs/NYBG-CSV/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 46 | 46 |
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 47 | 47 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 48 | 48 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 49 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 50 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 51 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 52 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
|
|
| 53 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 54 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
|
| 55 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
|
| 56 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
|
| 57 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/2",,120
|
|
| 58 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 59 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 60 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 61 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 62 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 63 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 64 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 65 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 66 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 67 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 68 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 69 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 70 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 71 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 72 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 73 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 74 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 75 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 76 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 77 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 78 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 79 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 49 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 50 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 51 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 52 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
|
|
| 53 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 54 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
|
| 55 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
|
| 56 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
|
| 57 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/2",,120
|
|
| 58 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 59 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 60 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 61 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 62 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 63 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 64 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 65 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 66 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 67 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 68 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 69 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 70 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 71 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 72 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 73 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 74 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 75 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 76 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 77 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 78 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 79 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 80 | 80 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 81 | 81 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 82 | 82 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| inputs/UArizona/test/VegBIEN.specimens.xml.ref | ||
|---|---|---|
| 37 | 37 |
<plantconcept> |
| 38 | 38 |
<plantname_id> |
| 39 | 39 |
<plantname> |
| 40 |
<rank>Authority</rank>
|
|
| 40 |
<rank>authority</rank>
|
|
| 41 | 41 |
<plantname>Cephaelis elata Sw.</plantname> |
| 42 | 42 |
</plantname> |
| 43 | 43 |
</plantname_id> |
| ... | ... | |
| 53 | 53 |
<plantconcept> |
| 54 | 54 |
<plantname_id> |
| 55 | 55 |
<plantname> |
| 56 |
<rank>Binomial</rank>
|
|
| 56 |
<rank>binomial</rank>
|
|
| 57 | 57 |
<plantname>Cephaelis elata</plantname> |
| 58 | 58 |
</plantname> |
| 59 | 59 |
</plantname_id> |
| ... | ... | |
| 70 | 70 |
<plantconcept> |
| 71 | 71 |
<plantname_id> |
| 72 | 72 |
<plantname> |
| 73 |
<rank>Family</rank>
|
|
| 73 |
<rank>family</rank>
|
|
| 74 | 74 |
<plantname>Rubiaceae</plantname> |
| 75 | 75 |
</plantname> |
| 76 | 76 |
</plantname_id> |
| ... | ... | |
| 86 | 86 |
<plantconcept> |
| 87 | 87 |
<plantname_id> |
| 88 | 88 |
<plantname> |
| 89 |
<rank>Genus</rank>
|
|
| 89 |
<rank>genus</rank>
|
|
| 90 | 90 |
<plantname>Cephaelis</plantname> |
| 91 | 91 |
</plantname> |
| 92 | 92 |
</plantname_id> |
| ... | ... | |
| 102 | 102 |
<plantconcept> |
| 103 | 103 |
<plantname_id> |
| 104 | 104 |
<plantname> |
| 105 |
<rank>Kingdom</rank>
|
|
| 105 |
<rank>kingdom</rank>
|
|
| 106 | 106 |
<plantname>Plantae</plantname> |
| 107 | 107 |
</plantname> |
| 108 | 108 |
</plantname_id> |
| ... | ... | |
| 118 | 118 |
<plantconcept> |
| 119 | 119 |
<plantname_id> |
| 120 | 120 |
<plantname> |
| 121 |
<rank>Order</rank>
|
|
| 121 |
<rank>order</rank>
|
|
| 122 | 122 |
<plantname>Gentianales</plantname> |
| 123 | 123 |
</plantname> |
| 124 | 124 |
</plantname_id> |
| ... | ... | |
| 134 | 134 |
<plantconcept> |
| 135 | 135 |
<plantname_id> |
| 136 | 136 |
<plantname> |
| 137 |
<rank>Species</rank>
|
|
| 137 |
<rank>species</rank>
|
|
| 138 | 138 |
<plantname>elata</plantname> |
| 139 | 139 |
</plantname> |
| 140 | 140 |
</plantname_id> |
| ... | ... | |
| 185 | 185 |
<plantconcept> |
| 186 | 186 |
<plantname_id> |
| 187 | 187 |
<plantname> |
| 188 |
<rank>Authority</rank>
|
|
| 188 |
<rank>authority</rank>
|
|
| 189 | 189 |
<plantname>Astragalus tribuloides Kotschy ex Bunge</plantname> |
| 190 | 190 |
</plantname> |
| 191 | 191 |
</plantname_id> |
| ... | ... | |
| 201 | 201 |
<plantconcept> |
| 202 | 202 |
<plantname_id> |
| 203 | 203 |
<plantname> |
| 204 |
<rank>Binomial</rank>
|
|
| 204 |
<rank>binomial</rank>
|
|
| 205 | 205 |
<plantname>Astragalus tribuloides</plantname> |
| 206 | 206 |
</plantname> |
| 207 | 207 |
</plantname_id> |
| ... | ... | |
| 218 | 218 |
<plantconcept> |
| 219 | 219 |
<plantname_id> |
| 220 | 220 |
<plantname> |
| 221 |
<rank>Family</rank>
|
|
| 221 |
<rank>family</rank>
|
|
| 222 | 222 |
<plantname>Fabaceae</plantname> |
| 223 | 223 |
</plantname> |
| 224 | 224 |
</plantname_id> |
| ... | ... | |
| 234 | 234 |
<plantconcept> |
| 235 | 235 |
<plantname_id> |
| 236 | 236 |
<plantname> |
| 237 |
<rank>Genus</rank>
|
|
| 237 |
<rank>genus</rank>
|
|
| 238 | 238 |
<plantname>Astragalus</plantname> |
| 239 | 239 |
</plantname> |
| 240 | 240 |
</plantname_id> |
| ... | ... | |
| 250 | 250 |
<plantconcept> |
| 251 | 251 |
<plantname_id> |
| 252 | 252 |
<plantname> |
| 253 |
<rank>Kingdom</rank>
|
|
| 253 |
<rank>kingdom</rank>
|
|
| 254 | 254 |
<plantname>Plantae</plantname> |
| 255 | 255 |
</plantname> |
| 256 | 256 |
</plantname_id> |
| ... | ... | |
| 266 | 266 |
<plantconcept> |
| 267 | 267 |
<plantname_id> |
| 268 | 268 |
<plantname> |
| 269 |
<rank>Order</rank>
|
|
| 269 |
<rank>order</rank>
|
|
| 270 | 270 |
<plantname>Fabales</plantname> |
| 271 | 271 |
</plantname> |
| 272 | 272 |
</plantname_id> |
| ... | ... | |
| 282 | 282 |
<plantconcept> |
| 283 | 283 |
<plantname_id> |
| 284 | 284 |
<plantname> |
| 285 |
<rank>Species</rank>
|
|
| 285 |
<rank>species</rank>
|
|
| 286 | 286 |
<plantname>tribuloides</plantname> |
| 287 | 287 |
</plantname> |
| 288 | 288 |
</plantname_id> |
| inputs/UArizona/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 46 | 46 |
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 47 | 47 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 48 | 48 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 49 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 50 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 51 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 52 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
|
|
| 53 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 54 |
IdentifiedDate,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/0",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 55 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
|
| 56 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
|
| 57 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
|
| 58 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/2",,120
|
|
| 59 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 60 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 61 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 62 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 63 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 64 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 65 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 66 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 67 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 68 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 69 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 70 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 71 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 72 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 73 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 74 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 75 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 76 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 77 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 78 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 79 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 80 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 49 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 50 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 51 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 52 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
|
|
| 53 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 54 |
IdentifiedDate,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/0",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 55 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
|
| 56 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
|
| 57 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
|
| 58 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/2",,120
|
|
| 59 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 60 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 61 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 62 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 63 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 64 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 65 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 66 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 67 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 68 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 69 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 70 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 71 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 72 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 73 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 74 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 75 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 76 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 77 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 78 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 79 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 80 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 81 | 81 |
GenGankNum,"/_label[label=""GenBank""]/value",This is a typo of GenBankNum from the original CSV,39 |
| 82 | 82 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 83 | 83 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| inputs/SALVIAS-CSV/test/VegBIEN.organisms.xml.ref | ||
|---|---|---|
| 61 | 61 |
<plantconcept> |
| 62 | 62 |
<plantname_id> |
| 63 | 63 |
<plantname> |
| 64 |
<rank>Family</rank>
|
|
| 64 |
<rank>family</rank>
|
|
| 65 | 65 |
<plantname>Fabaceae</plantname> |
| 66 | 66 |
</plantname> |
| 67 | 67 |
</plantname_id> |
| ... | ... | |
| 76 | 76 |
<plantconcept> |
| 77 | 77 |
<plantname_id> |
| 78 | 78 |
<plantname> |
| 79 |
<rank>Genus</rank>
|
|
| 79 |
<rank>genus</rank>
|
|
| 80 | 80 |
<plantname>Inga</plantname> |
| 81 | 81 |
</plantname> |
| 82 | 82 |
</plantname_id> |
| ... | ... | |
| 91 | 91 |
<plantconcept> |
| 92 | 92 |
<plantname_id> |
| 93 | 93 |
<plantname> |
| 94 |
<rank>Species</rank>
|
|
| 94 |
<rank>species</rank>
|
|
| 95 | 95 |
<plantname>indet</plantname> |
| 96 | 96 |
</plantname> |
| 97 | 97 |
</plantname_id> |
| ... | ... | |
| 106 | 106 |
<plantconcept> |
| 107 | 107 |
<plantname_id> |
| 108 | 108 |
<plantname> |
| 109 |
<rank>Binomial</rank>
|
|
| 109 |
<rank>binomial</rank>
|
|
| 110 | 110 |
<plantname>Inga indet</plantname> |
| 111 | 111 |
</plantname> |
| 112 | 112 |
</plantname_id> |
| ... | ... | |
| 122 | 122 |
<plantconcept> |
| 123 | 123 |
<plantname_id> |
| 124 | 124 |
<plantname> |
| 125 |
<rank>Family</rank>
|
|
| 125 |
<rank>family</rank>
|
|
| 126 | 126 |
<plantname>Fabaceae</plantname> |
| 127 | 127 |
</plantname> |
| 128 | 128 |
</plantname_id> |
| ... | ... | |
| 194 | 194 |
<plantconcept> |
| 195 | 195 |
<plantname_id> |
| 196 | 196 |
<plantname> |
| 197 |
<rank>Family</rank>
|
|
| 197 |
<rank>family</rank>
|
|
| 198 | 198 |
<plantname>Myristicaceae</plantname> |
| 199 | 199 |
</plantname> |
| 200 | 200 |
</plantname_id> |
| ... | ... | |
| 209 | 209 |
<plantconcept> |
| 210 | 210 |
<plantname_id> |
| 211 | 211 |
<plantname> |
| 212 |
<rank>Genus</rank>
|
|
| 212 |
<rank>genus</rank>
|
|
| 213 | 213 |
<plantname>Virola</plantname> |
| 214 | 214 |
</plantname> |
| 215 | 215 |
</plantname_id> |
| ... | ... | |
| 224 | 224 |
<plantconcept> |
| 225 | 225 |
<plantname_id> |
| 226 | 226 |
<plantname> |
| 227 |
<rank>Species</rank>
|
|
| 227 |
<rank>species</rank>
|
|
| 228 | 228 |
<plantname>pavonis</plantname> |
| 229 | 229 |
</plantname> |
| 230 | 230 |
</plantname_id> |
| ... | ... | |
| 239 | 239 |
<plantconcept> |
| 240 | 240 |
<plantname_id> |
| 241 | 241 |
<plantname> |
| 242 |
<rank>Binomial</rank>
|
|
| 242 |
<rank>binomial</rank>
|
|
| 243 | 243 |
<plantname>Virola pavonis</plantname> |
| 244 | 244 |
</plantname> |
| 245 | 245 |
</plantname_id> |
| ... | ... | |
| 255 | 255 |
<plantconcept> |
| 256 | 256 |
<plantname_id> |
| 257 | 257 |
<plantname> |
| 258 |
<rank>Family</rank>
|
|
| 258 |
<rank>family</rank>
|
|
| 259 | 259 |
<plantname>Myristicaceae</plantname> |
| 260 | 260 |
</plantname> |
| 261 | 261 |
</plantname_id> |
| inputs/SALVIAS-CSV/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 31 | 31 |
intercept_cm,/aggregateoccurrence/linecover,"Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
| 32 | 32 |
coll_firstname,/aggregateoccurrence/verbatimcollectorname/_name/first,Brad: See comment above |
| 33 | 33 |
coll_lastname,/aggregateoccurrence/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 34 |
specific_authority,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 35 |
family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 36 |
genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 37 |
specific_epithet,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 38 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
|
|
| 39 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
|
|
| 40 |
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
| 41 |
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
|
|
| 42 |
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 34 |
specific_authority,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 35 |
family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 36 |
genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 37 |
specific_epithet,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 38 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first",
|
|
| 39 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",
|
|
| 40 |
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
|
|
| 41 |
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last",Brad: OMIT
|
|
| 42 |
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 43 | 43 |
collector_code,,Brad: OMIT |
| 44 | 44 |
comments,,Brad: OMIT |
| 45 | 45 |
fam_status,,Brad: OMIT. This will be determined later by using TNRS. |
| schemas/vegbien.sql | ||
|---|---|---|
| 89 | 89 |
-- |
| 90 | 90 |
|
| 91 | 91 |
CREATE TYPE taxonrank AS ENUM ( |
| 92 |
'Binomial',
|
|
| 93 |
'Kingdom',
|
|
| 94 |
'Subkingdom',
|
|
| 95 |
'Superdivision',
|
|
| 96 |
'Division',
|
|
| 97 |
'Class',
|
|
| 98 |
'Subclass',
|
|
| 99 |
'Order',
|
|
| 100 |
'Suborder',
|
|
| 101 |
'Family',
|
|
| 102 |
'Subfamily',
|
|
| 103 |
'Tribe',
|
|
| 104 |
'Subtribe',
|
|
| 105 |
'Genus',
|
|
| 106 |
'Subgenus',
|
|
| 107 |
'Section',
|
|
| 108 |
'Species Aggregate',
|
|
| 109 |
'Species',
|
|
| 110 |
'Subspecies',
|
|
| 111 |
'Authority',
|
|
| 112 |
'Variety',
|
|
| 113 |
'Cultivar/Forma'
|
|
| 92 |
'binomial',
|
|
| 93 |
'kingdom',
|
|
| 94 |
'subkingdom',
|
|
| 95 |
'superdivision',
|
|
| 96 |
'division',
|
|
| 97 |
'class',
|
|
| 98 |
'subclass',
|
|
| 99 |
'order',
|
|
| 100 |
'suborder',
|
|
| 101 |
'family',
|
|
| 102 |
'subfamily',
|
|
| 103 |
'tribe',
|
|
| 104 |
'subtribe',
|
|
| 105 |
'genus',
|
|
| 106 |
'subgenus',
|
|
| 107 |
'section',
|
|
| 108 |
'species aggregate',
|
|
| 109 |
'species',
|
|
| 110 |
'subspecies',
|
|
| 111 |
'authority',
|
|
| 112 |
'variety',
|
|
| 113 |
'cultivar/forma'
|
|
| 114 | 114 |
); |
| 115 | 115 |
|
| 116 | 116 |
|
| mappings/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 91 | 91 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName",/aggregateoccurrence/verbatimcollectorname/_name/first, |
| 92 | 92 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName",/aggregateoccurrence/verbatimcollectorname/_name/last, |
| 93 | 93 |
/simpleUserdefined[name=collectionDate]/value,/specimenreplicate:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectiondate, |
| 94 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 95 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 96 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 97 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 98 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first", |
|
| 99 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last", |
|
| 100 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 101 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/fit","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/taxonFit", |
|
| 102 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}",
|
|
| 103 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 104 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 105 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 106 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 107 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 108 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 109 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 110 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]/*_id/plantconcept/*_id/*/plantname", |
|
| 94 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 95 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 96 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 97 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 98 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first", |
|
| 99 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_name/last", |
|
| 100 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 101 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/fit","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/taxonFit", |
|
| 102 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}",
|
|
| 103 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 104 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 105 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 106 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 107 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 108 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 109 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname", |
|
| 110 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]/*_id/plantconcept/*_id/*/plantname", |
|
| mappings/DwC2.ci-VegBIEN.specimens.csv | ||
|---|---|---|
| 33 | 33 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 34 | 34 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 35 | 35 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 36 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 37 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 38 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
|
|
| 39 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
|
|
| 40 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 41 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 42 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 43 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 44 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 45 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 46 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 47 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 48 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 49 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 50 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 51 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 52 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 53 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 54 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 55 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 56 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 57 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 58 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 59 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 36 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 37 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 38 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
|
|
| 39 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
|
|
| 40 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 41 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 42 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 43 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 44 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 45 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 46 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 47 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 48 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 49 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 50 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 51 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 52 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 53 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 54 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 55 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 56 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 57 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 58 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 59 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 60 | 60 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 61 | 61 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 62 | 62 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| mappings/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 16 | 16 |
eventDate,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_*/date,,44 |
| 17 | 17 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 18 | 18 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 19 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 20 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
|
|
| 21 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 22 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 23 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 24 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 25 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 26 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 27 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 28 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 29 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 30 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 19 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 20 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
|
|
| 21 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 22 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 23 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 24 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 25 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 26 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 27 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 28 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 29 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 30 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 31 | 31 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 32 | 32 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| 33 | 33 |
fieldNotes,/description,, |
| mappings/for_review/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 91 | 91 |
//individualName/givenName,//aggregateoccurrence/verbatimcollectorname/_name/first, |
| 92 | 92 |
//individualName/surName,//aggregateoccurrence/verbatimcollectorname/_name/last, |
| 93 | 93 |
/simpleUserdefined[name=collectionDate]/value,//specimenreplicate/collectiondate, |
| 94 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=computer,rank=Authority]/*_id/plantconcept/*_id/*/plantname", |
|
| 95 |
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=computer,rank=Family]/*_id/plantconcept/*_id/*/plantname", |
|
| 96 |
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=computer,rank=Genus]/*_id/plantconcept/*_id/*/plantname", |
|
| 97 |
//*s/taxonConcept[@code=sp]/Name,"/taxondetermination[rolecode=computer,rank=Species]/*_id/plantconcept/*_id/*/plantname", |
|
| 98 |
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,"/taxondetermination[rolecode=computer,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first", |
|
| 99 |
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,"/taxondetermination[rolecode=computer,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname/_name/last", |
|
| 100 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=identifier,rank=Authority]/*_id/plantconcept/*_id/*/plantname", |
|
| 101 |
//*s/taxonConcept[@code=binom]/fit,"/taxondetermination[rolecode=identifier,rank=Binomial]/taxonFit", |
|
| 102 |
"//*s/taxonConcept[@code=binom]/{fit,Name/_name/middle}","/taxondetermination[rolecode=identifier,rank=Binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}",
|
|
| 103 |
//*s/taxonConcept[@code=binom]/Name,"/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/plantconcept/*_id/*/plantname", |
|
| 104 |
//*s/taxonConcept[@code=cl]/Name,"/taxondetermination[rolecode=identifier,rank=Class]/*_id/plantconcept/*_id/*/plantname", |
|
| 105 |
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=identifier,rank=Family]/*_id/plantconcept/*_id/*/plantname", |
|
| 106 |
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=identifier,rank=Genus]/*_id/plantconcept/*_id/*/plantname", |
|
| 107 |
//*s/taxonConcept[@code=reg]/Name,"/taxondetermination[rolecode=identifier,rank=Kingdom]/*_id/plantconcept/*_id/*/plantname", |
|
| 108 |
//*s/taxonConcept[@code=ord]/Name,"/taxondetermination[rolecode=identifier,rank=Order]/*_id/plantconcept/*_id/*/plantname", |
|
| 109 |
//*s/taxonConcept[@code=phyl_div]/Name,"/taxondetermination[rolecode=identifier,rank=Subkingdom]/*_id/plantconcept/*_id/*/plantname", |
|
| 110 |
//*s/taxonConcept[@code=ssp]/Name,"/taxondetermination[rolecode=identifier,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname", |
|
| 94 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=computer,rank=authority]/*_id/plantconcept/*_id/*/plantname", |
|
| 95 |
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=computer,rank=family]/*_id/plantconcept/*_id/*/plantname", |
|
| 96 |
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=computer,rank=genus]/*_id/plantconcept/*_id/*/plantname", |
|
| 97 |
//*s/taxonConcept[@code=sp]/Name,"/taxondetermination[rolecode=computer,rank=species]/*_id/plantconcept/*_id/*/plantname", |
|
| 98 |
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,"/taxondetermination[rolecode=computer,rank=subspecies]/*_id/plantconcept/*_id/*/plantname/_name/first", |
|
| 99 |
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,"/taxondetermination[rolecode=computer,rank=subspecies]/*_id/plantconcept/*_id/*/plantname/_name/last", |
|
| 100 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=identifier,rank=authority]/*_id/plantconcept/*_id/*/plantname", |
|
| 101 |
//*s/taxonConcept[@code=binom]/fit,"/taxondetermination[rolecode=identifier,rank=binomial]/taxonFit", |
|
| 102 |
"//*s/taxonConcept[@code=binom]/{fit,Name/_name/middle}","/taxondetermination[rolecode=identifier,rank=binomial]/{taxonFit,*_id/plantconcept/*_id/*/plantname/_name/middle}",
|
|
| 103 |
//*s/taxonConcept[@code=binom]/Name,"/taxondetermination[rolecode=identifier,rank=binomial]/*_id/plantconcept/*_id/*/plantname", |
|
| 104 |
//*s/taxonConcept[@code=cl]/Name,"/taxondetermination[rolecode=identifier,rank=class]/*_id/plantconcept/*_id/*/plantname", |
|
| 105 |
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=identifier,rank=family]/*_id/plantconcept/*_id/*/plantname", |
|
| 106 |
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=identifier,rank=genus]/*_id/plantconcept/*_id/*/plantname", |
|
| 107 |
//*s/taxonConcept[@code=reg]/Name,"/taxondetermination[rolecode=identifier,rank=kingdom]/*_id/plantconcept/*_id/*/plantname", |
|
| 108 |
//*s/taxonConcept[@code=ord]/Name,"/taxondetermination[rolecode=identifier,rank=order]/*_id/plantconcept/*_id/*/plantname", |
|
| 109 |
//*s/taxonConcept[@code=phyl_div]/Name,"/taxondetermination[rolecode=identifier,rank=subkingdom]/*_id/plantconcept/*_id/*/plantname", |
|
| 110 |
//*s/taxonConcept[@code=ssp]/Name,"/taxondetermination[rolecode=identifier,rank=subspecies]/*_id/plantconcept/*_id/*/plantname", |
|
| mappings/for_review/DwC2-VegBIEN.specimens.csv | ||
|---|---|---|
| 16 | 16 |
eventDate,//locationevent/obsstartdate/_*/date,,44 |
| 17 | 17 |
maximumDepthInMeters,//locationevent/waterdepth/_avg/max,,75 |
| 18 | 18 |
minimumDepthInMeters,//locationevent/waterdepth/_avg/min,,74 |
| 19 |
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 20 |
dateIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/determinationdate/_*/date",,120
|
|
| 21 |
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 22 |
scientificName,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Binomial]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 23 |
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Class]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 24 |
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Family]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 25 |
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Genus]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 26 |
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 27 |
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Order]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 28 |
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Species]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 29 |
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 30 |
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=Subspecies]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 19 |
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 20 |
dateIdentified,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=binomial]/determinationdate/_*/date",,120
|
|
| 21 |
identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=binomial]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 22 |
scientificName,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=binomial]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 23 |
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=class]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 24 |
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=family]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 25 |
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=genus]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 26 |
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=kingdom]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 27 |
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=order]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 28 |
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=species]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 29 |
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 30 |
infraspecificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,rank=subspecies]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 31 | 31 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 32 | 32 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| 33 | 33 |
fieldNotes,/description,, |
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 44 | 44 |
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 45 | 45 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 46 | 46 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 47 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 48 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 49 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 50 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date",,120
|
|
| 51 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 52 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
|
| 53 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
|
| 54 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
|
| 55 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]/determinationdate/_*/date/_alt/2",,120
|
|
| 56 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 57 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 58 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 59 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 60 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 61 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 62 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 63 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 64 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 65 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 66 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 67 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 68 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 69 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 70 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 71 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 72 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 73 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 74 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 75 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 76 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 77 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=Subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 47 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 48 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 49 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
|
|
| 50 |
DateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date",,120
|
|
| 51 |
dateIdentified/_alt,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt",Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
|
|
| 52 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
|
|
| 53 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
|
|
| 54 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
|
|
| 55 |
dateIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]/determinationdate/_*/date/_alt/2",,120
|
|
| 56 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 57 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 58 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 59 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=binomial]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Bob, Nick, please is this mapping OK?",134
|
|
| 60 |
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 61 |
class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
|
|
| 62 |
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 63 |
family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
|
|
| 64 |
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 65 |
genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
|
|
| 66 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 67 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
|
|
| 68 |
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 69 |
order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
|
|
| 70 |
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 71 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 72 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
|
|
| 73 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 74 |
phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
|
|
| 75 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 76 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 77 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/*_id/plantname/rank=subspecies]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,150
|
|
| 78 | 78 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 79 | 79 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 80 | 80 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
Also available in: Unified diff
VegBIEN: taxonrank enum: Made values lowercase to match case convention in other enums