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root/trunk @ 13401

Name Size Revision Age Author Comment
  BIEN2 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 13400 about 10 years Aaron Marcuse-Kubitza added validation/aggregating/plots/VegBank/bien...
  backups 13294 about 10 years Aaron Marcuse-Kubitza backups/mysql_snapshot: documented initial vegb...
  bin 13309 about 10 years Aaron Marcuse-Kubitza bin/in_place: diff: use --brief to avoid scanni...
  config 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  derived 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  exports 13330 about 10 years Aaron Marcuse-Kubitza bugfix: exports/.rsync_filter.upload: *.csv: ne...
  inputs 13401 about 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
  issues 12124 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 13392 about 10 years Aaron Marcuse-Kubitza fix: lib/util.py: dict_subset(): raise an error...
  mappings 13115 about 10 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped subspecies...
  planning 13396 about 10 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 13398 about 10 years Aaron Marcuse-Kubitza schemas/public_.sql: _plots_20_tnrs_input_names...
  validation 13400 about 10 years Aaron Marcuse-Kubitza added validation/aggregating/plots/VegBank/bien...
  web 13362 about 10 years Aaron Marcuse-Kubitza web/links/index.htm: updated to Firefox bookmar...
  wiki 12124 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.2 KB 13363 about 10 years Aaron Marcuse-Kubitza /Makefile: python-Linux: removed ordereddict, s...
README.TXT 32.5 KB 13341 about 10 years Aaron Marcuse-Kubitza fix: /README.TXT: Mac backup: exclude ~/Virtual...
fix_perms 97 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 518 Bytes 12968 about 10 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
unmapped_terms.csv 33 KB 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
13401 05/03/2014 02:03 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: add: verify/: also svn:ignore *.log
13400 05/03/2014 12:44 PM Aaron Marcuse-Kubitza

added validation/aggregating/plots/VegBank/bien3_validations_salvias_db_original_adjToVegBank.txt from Mike Lee
13399 05/03/2014 01:39 AM Aaron Marcuse-Kubitza

validation/aggregating/plots/bien3_validations_salvias_vegbien.sql: updated to DB
13398 05/03/2014 01:37 AM Aaron Marcuse-Kubitza

schemas/public_.sql: _plots_20_tnrs_input_names, _plots_21_tnrs_output_names: added Brad's comments
13397 05/03/2014 01:28 AM Aaron Marcuse-Kubitza

bugfix: schemas/util.sql: materialize_query(): contents generated from: need to include search_path so query is runnable
13396 05/03/2014 01:05 AM Aaron Marcuse-Kubitza

planning/meetings/BIEN conference call availability.xlsx: updated
13395 05/03/2014 12:47 AM Aaron Marcuse-Kubitza

validation/aggregating/plots/bien3_validations_salvias_vegbien.sql: _plots_21_tnrs_output_names: removed no longer needed setting of join_collapse_limit (the column now used does not involve an additional join)
13394 05/02/2014 11:34 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: _plots_21_tnrs_output_names: use scrubbed_unique_taxon_name (concatenated output name) because this is more similar to the concatenated name used in _plots_20_tnrs_input_names
13393 05/02/2014 11:22 PM Aaron Marcuse-Kubitza

bugfix: validation/aggregating/plots/bien3_validations_salvias_vegbien.sql: _plots_21_tnrs_output_names: needs to be run with `SET join_collapse_limit = DEFAULT; SET enable_hashjoin = off;` to produce the right query plan
13392 05/02/2014 10:57 PM Aaron Marcuse-Kubitza

fix: lib/util.py: dict_subset(): raise an error if collections.OrderedDict isn't available, because some callers may depend on this. note that using dict instead of OrderedDict may be the cause of the joining on the wrong columns bug (issue #902).

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