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--
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-- PostgreSQL database dump
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--
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SET statement_timeout = 0;
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SET lock_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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--
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-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: -
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--
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--CREATE SCHEMA "TNRS";
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--
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-- Name: SCHEMA "TNRS"; Type: COMMENT; Schema: -; Owner: -
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--
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COMMENT ON SCHEMA "TNRS" IS 'IMPORTANT: when changing this schema, you must also make the same changes on vegbiendev:
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on vegbiendev:
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# back up existing TNRS schema (in case of an accidental incorrect change):
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
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$ svn up
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$ svn di
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# make the changes shown in the diff
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## to change column types:
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SELECT util.set_col_types(''"TNRS".tnrs'', ARRAY[
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(''col'', ''new_type'')
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]::util.col_cast[]); -- runtime: 9 min ("531282 ms")
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$ rm=1 inputs/.TNRS/schema.sql.run
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# repeat until `svn di` shows no diff
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# back up new TNRS schema:
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")';
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SET search_path = "TNRS", pg_catalog;
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--
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-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: -
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--
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CREATE FUNCTION batch__fill() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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new.id_by_time = new.time_submitted;
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new.id = COALESCE(new.id, new.id_by_time);
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RETURN new;
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END;
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$$;
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--
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-- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
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--
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CREATE FUNCTION family_is_homonym(family text) RETURNS boolean
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LANGUAGE sql STABLE STRICT
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AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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--
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-- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: -
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--
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CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean
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LANGUAGE sql STABLE STRICT
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AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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--
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-- Name: map_taxonomic_status(text, text); Type: FUNCTION; Schema: TNRS; Owner: -
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--
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CREATE FUNCTION map_taxonomic_status(taxonomic_status_verbatim text, scrubbed_unique_taxon_name text) RETURNS text
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LANGUAGE sql IMMUTABLE
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AS $_$
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SELECT CASE WHEN $2 IS NOT NULL THEN 'accepted' ELSE lower($1) END
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$_$;
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--
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-- Name: tnrs_populate_fields(); Type: FUNCTION; Schema: TNRS; Owner: -
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--
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CREATE FUNCTION tnrs_populate_fields() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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DECLARE
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"Specific_epithet_is_plant" boolean :=
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(CASE
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WHEN new."Infraspecific_epithet_matched" IS NOT NULL
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OR new."Infraspecific_epithet_2_matched" IS NOT NULL
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OR new."Specific_epithet_score" >= 0.9 -- fuzzy match
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THEN true
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ELSE NULL -- ambiguous
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END);
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never_homonym boolean = COALESCE(new."Author_score" >= 0.6, false);
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-- author disambiguates
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family_is_homonym boolean = NOT never_homonym
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AND "TNRS".family_is_homonym(new."Family_matched");
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genus_is_homonym boolean = NOT never_homonym
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AND "TNRS".genus_is_homonym(new."Genus_matched");
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matched_taxon_name_with_author text = NULLIF(concat_ws(' '
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, NULLIF(NULLIF(new."Name_matched_accepted_family", 'Unknown'),
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new."Name_matched")
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, NULLIF(new."Name_matched", 'No suitable matches found.')
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, new."Name_matched_author"
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), '');
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accepted_taxon_name_with_author text = NULLIF(concat_ws(' '
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, NULLIF(NULLIF(new."Accepted_name_family", 'Unknown'),
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new."Accepted_name")
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, new."Accepted_name"
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, new."Accepted_name_author"
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), '');
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BEGIN
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/* exclude homonyms because these are not valid matches (i.e. TNRS provides
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a name, but the name is not meaningful because it is not unambiguous). */
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new.is_valid_match = new."Taxonomic_status" != 'Invalid'
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AND COALESCE(CASE
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WHEN new."Family_score" = 1 AND NOT family_is_homonym -- exact match
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THEN true
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ELSE -- consider genus
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(CASE
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WHEN new."Genus_score" = 1 -- exact match
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THEN
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(CASE
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WHEN NOT genus_is_homonym THEN true
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ELSE "Specific_epithet_is_plant"
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END)
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WHEN new."Genus_score" >= 0.85 -- fuzzy match
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THEN "Specific_epithet_is_plant"
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ELSE NULL -- ambiguous
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END)
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END, false);
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new.scrubbed_unique_taxon_name = COALESCE(
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accepted_taxon_name_with_author, matched_taxon_name_with_author);
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RETURN new;
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END;
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$$;
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--
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-- Name: FUNCTION tnrs_populate_fields(); Type: COMMENT; Schema: TNRS; Owner: -
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--
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COMMENT ON FUNCTION tnrs_populate_fields() IS 'IMPORTANT: when changing this function, you must regenerate the derived cols:
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UPDATE "TNRS".tnrs SET "Name_submitted" = "Name_submitted"
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runtime: 30 min ("5564082 rows affected, 1918900 ms execution time")
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VACUUM ANALYZE "TNRS".tnrs -- to remove previous rows
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runtime: 1.5 min ("92633 ms")';
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SET default_tablespace = '';
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SET default_with_oids = false;
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--
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-- Name: tnrs; Type: TABLE; Schema: TNRS; Owner: -; Tablespace:
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--
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CREATE TABLE tnrs (
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batch text DEFAULT now() NOT NULL,
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"Name_number" integer NOT NULL,
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"Name_submitted" text NOT NULL,
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"Overall_score" double precision,
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"Name_matched" text,
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"Name_matched_rank" text,
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"Name_score" double precision,
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"Name_matched_author" text,
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"Name_matched_url" text,
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"Author_matched" text,
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"Author_score" double precision,
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"Family_matched" text,
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"Family_score" double precision,
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"Name_matched_accepted_family" text,
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"Genus_matched" text,
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"Genus_score" double precision,
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"Specific_epithet_matched" text,
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"Specific_epithet_score" double precision,
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"Infraspecific_rank" text,
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"Infraspecific_epithet_matched" text,
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"Infraspecific_epithet_score" double precision,
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"Infraspecific_rank_2" text,
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"Infraspecific_epithet_2_matched" text,
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"Infraspecific_epithet_2_score" double precision,
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"Annotations" text,
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"Unmatched_terms" text,
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"Taxonomic_status" text,
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"Accepted_name" text,
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"Accepted_name_author" text,
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"Accepted_name_rank" text,
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"Accepted_name_url" text,
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"Accepted_name_species" text,
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"Accepted_name_family" text,
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"Selected" text,
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"Source" text,
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"Warnings" text,
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"Accepted_name_lsid" text,
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is_valid_match boolean NOT NULL,
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scrubbed_unique_taxon_name text
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);
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--
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-- Name: TABLE tnrs; Type: COMMENT; Schema: TNRS; Owner: -
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--
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COMMENT ON TABLE tnrs IS 'IMPORTANT: when changing this table''s schema, you may need to re-run TNRS:
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$ inputs/.TNRS/data.sql.run refresh';
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--
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-- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: -
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--
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CREATE VIEW "MatchedTaxon" AS
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SELECT tnrs.batch AS "*Name_matched.batch",
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tnrs."Name_submitted" AS "concatenatedScientificName",
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tnrs."Name_matched" AS "matchedTaxonName",
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tnrs."Name_matched_rank" AS "matchedTaxonRank",
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tnrs."Name_score" AS "*Name_matched.Name_score",
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tnrs."Name_matched_author" AS "matchedScientificNameAuthorship",
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tnrs."Name_matched_url" AS "matchedScientificNameID",
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tnrs."Author_score" AS "*Name_matched.Author_score",
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tnrs."Family_score" AS "matchedFamilyConfidence_fraction",
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COALESCE(tnrs."Name_matched_accepted_family", tnrs."Accepted_name_family") AS "matchedFamily",
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tnrs."Genus_matched" AS "matchedGenus",
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tnrs."Genus_score" AS "matchedGenusConfidence_fraction",
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tnrs."Specific_epithet_matched" AS "matchedSpecificEpithet",
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tnrs."Specific_epithet_score" AS "matchedSpeciesConfidence_fraction",
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tnrs."Infraspecific_epithet_matched" AS "matchedInfraspecificEpithet",
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tnrs."Infraspecific_epithet_score" AS "*Name_matched.Infraspecific_epithet_score",
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tnrs."Annotations" AS "identificationQualifier",
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tnrs."Unmatched_terms" AS "morphospeciesSuffix",
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tnrs."Taxonomic_status" AS "taxonomicStatus",
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tnrs."Accepted_name" AS scrubbed_taxon_name_no_author,
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tnrs."Accepted_name_author" AS scrubbed_author,
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tnrs."Accepted_name_rank" AS scrubbed_taxon_rank,
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tnrs."Accepted_name_url" AS "acceptedScientificNameID",
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tnrs."Accepted_name_species" AS "*Name_matched.Accepted_name_species",
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tnrs."Accepted_name_family" AS scrubbed_family,
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tnrs."Selected" AS "*Name_matched.Selected",
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tnrs."Source" AS "*Name_matched.Source",
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tnrs."Warnings" AS "*Name_matched.Warnings",
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tnrs."Accepted_name_lsid" AS "*Name_matched.Accepted_name_lsid",
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tnrs.is_valid_match AS taxon_scrub__is_valid_match,
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tnrs.scrubbed_unique_taxon_name
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FROM tnrs;
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--
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-- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: -
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--
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264
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265
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CREATE VIEW "ValidMatchedTaxon" AS
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SELECT "MatchedTaxon"."*Name_matched.batch",
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"MatchedTaxon"."concatenatedScientificName",
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"MatchedTaxon"."matchedTaxonName",
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"MatchedTaxon"."matchedTaxonRank",
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"MatchedTaxon"."*Name_matched.Name_score",
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"MatchedTaxon"."matchedScientificNameAuthorship",
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"MatchedTaxon"."matchedScientificNameID",
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"MatchedTaxon"."*Name_matched.Author_score",
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"MatchedTaxon"."matchedFamilyConfidence_fraction",
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"MatchedTaxon"."matchedFamily",
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"MatchedTaxon"."matchedGenus",
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"MatchedTaxon"."matchedGenusConfidence_fraction",
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"MatchedTaxon"."matchedSpecificEpithet",
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"MatchedTaxon"."matchedSpeciesConfidence_fraction",
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"MatchedTaxon"."matchedInfraspecificEpithet",
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"MatchedTaxon"."*Name_matched.Infraspecific_epithet_score",
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282
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"MatchedTaxon"."identificationQualifier",
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283
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"MatchedTaxon"."morphospeciesSuffix",
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"MatchedTaxon"."taxonomicStatus",
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285
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"MatchedTaxon".scrubbed_taxon_name_no_author,
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286
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"MatchedTaxon".scrubbed_author,
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287
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"MatchedTaxon".scrubbed_taxon_rank,
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288
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"MatchedTaxon"."acceptedScientificNameID",
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289
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"MatchedTaxon"."*Name_matched.Accepted_name_species",
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290
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"MatchedTaxon".scrubbed_family,
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291
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"MatchedTaxon"."*Name_matched.Selected",
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292
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"MatchedTaxon"."*Name_matched.Source",
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293
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"MatchedTaxon"."*Name_matched.Warnings",
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294
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"MatchedTaxon"."*Name_matched.Accepted_name_lsid",
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295
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"MatchedTaxon".taxon_scrub__is_valid_match,
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296
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"MatchedTaxon".scrubbed_unique_taxon_name
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297
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FROM "MatchedTaxon"
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298
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WHERE "MatchedTaxon".taxon_scrub__is_valid_match;
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299
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300
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301
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--
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302
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-- Name: VIEW "ValidMatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: -
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303
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--
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304
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305
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COMMENT ON VIEW "ValidMatchedTaxon" IS 'to update, use * as the column list';
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306
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307
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308
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--
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309
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-- Name: batch; Type: TABLE; Schema: TNRS; Owner: -; Tablespace:
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310
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--
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311
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312
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CREATE TABLE batch (
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313
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id text NOT NULL,
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314
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id_by_time text,
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315
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time_submitted timestamp with time zone DEFAULT now(),
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316
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client_version text
|
317
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);
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318
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319
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320
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--
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321
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-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: -; Tablespace:
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322
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--
|
323
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|
324
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CREATE TABLE batch_download_settings (
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325
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id text NOT NULL,
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326
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"E-mail" text,
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327
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"Id" text,
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328
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"Job type" text,
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329
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"Contains Id" boolean,
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330
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"Start time" text,
|
331
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"Finish time" text,
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332
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"TNRS version" text,
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333
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"Sources selected" text,
|
334
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"Match threshold" double precision,
|
335
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"Classification" text,
|
336
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"Allow partial matches?" boolean,
|
337
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"Sort by source" boolean,
|
338
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"Constrain by higher taxonomy" boolean
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339
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);
|
340
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|
341
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|
342
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--
|
343
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-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: -
|
344
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--
|
345
|
|
346
|
COMMENT ON TABLE batch_download_settings IS 'stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt';
|
347
|
|
348
|
|
349
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--
|
350
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-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: -; Tablespace:
|
351
|
--
|
352
|
|
353
|
CREATE TABLE client_version (
|
354
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id text NOT NULL,
|
355
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global_rev integer NOT NULL,
|
356
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"/lib/tnrs.py rev" integer,
|
357
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"/bin/tnrs_db rev" integer
|
358
|
);
|
359
|
|
360
|
|
361
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--
|
362
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-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: -
|
363
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--
|
364
|
|
365
|
COMMENT ON TABLE client_version IS 'contains svn revisions';
|
366
|
|
367
|
|
368
|
--
|
369
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-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: -
|
370
|
--
|
371
|
|
372
|
COMMENT ON COLUMN client_version.global_rev IS 'from `svn info .` > Last Changed Rev';
|
373
|
|
374
|
|
375
|
--
|
376
|
-- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: -
|
377
|
--
|
378
|
|
379
|
COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS 'from `svn info lib/tnrs.py` > Last Changed Rev';
|
380
|
|
381
|
|
382
|
--
|
383
|
-- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: -
|
384
|
--
|
385
|
|
386
|
COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS 'from `svn info bin/tnrs_db` > Last Changed Rev';
|
387
|
|
388
|
|
389
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--
|
390
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-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: VIEW; Schema: TNRS; Owner: -
|
391
|
--
|
392
|
|
393
|
CREATE VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" AS
|
394
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SELECT tnrs."Name_submitted" AS scrubbed_unique_taxon_name,
|
395
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tnrs."Name_matched_rank" AS scrubbed_parsed_taxon_rank,
|
396
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COALESCE(tnrs."Name_matched_accepted_family", tnrs."Family_matched") AS scrubbed_parsed_family,
|
397
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tnrs."Genus_matched" AS scrubbed_genus,
|
398
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tnrs."Specific_epithet_matched" AS scrubbed_specific_epithet,
|
399
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tnrs."Infraspecific_rank" AS scrubbed_infraspecific_rank,
|
400
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tnrs."Infraspecific_epithet_matched" AS scrubbed_infraspecific_epithet,
|
401
|
tnrs."Name_matched_author" AS scrubbed_parsed_author,
|
402
|
tnrs."Name_matched" AS scrubbed_parsed_taxon_name_no_author
|
403
|
FROM tnrs;
|
404
|
|
405
|
|
406
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--
|
407
|
-- Name: VIEW "taxon_scrub.scrubbed_unique_taxon_name.*"; Type: COMMENT; Schema: TNRS; Owner: -
|
408
|
--
|
409
|
|
410
|
COMMENT ON VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" IS 'scrubbed_family: Name_matched_accepted_family was missing from the TNRS results at one point, so Family_matched is used as a workaround to populate this. the workaround is for *accepted names only*, as no opinion names do not have an Accepted_name_family to prepend to the scrubbed name to parse.';
|
411
|
|
412
|
|
413
|
--
|
414
|
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: -
|
415
|
--
|
416
|
|
417
|
CREATE VIEW taxon_scrub AS
|
418
|
SELECT "ValidMatchedTaxon".scrubbed_unique_taxon_name,
|
419
|
"ValidMatchedTaxon"."*Name_matched.batch",
|
420
|
"ValidMatchedTaxon"."concatenatedScientificName",
|
421
|
"ValidMatchedTaxon"."matchedTaxonName",
|
422
|
"ValidMatchedTaxon"."matchedTaxonRank",
|
423
|
"ValidMatchedTaxon"."*Name_matched.Name_score",
|
424
|
"ValidMatchedTaxon"."matchedScientificNameAuthorship",
|
425
|
"ValidMatchedTaxon"."matchedScientificNameID",
|
426
|
"ValidMatchedTaxon"."*Name_matched.Author_score",
|
427
|
"ValidMatchedTaxon"."matchedFamilyConfidence_fraction",
|
428
|
"ValidMatchedTaxon"."matchedFamily",
|
429
|
"ValidMatchedTaxon"."matchedGenus",
|
430
|
"ValidMatchedTaxon"."matchedGenusConfidence_fraction",
|
431
|
"ValidMatchedTaxon"."matchedSpecificEpithet",
|
432
|
"ValidMatchedTaxon"."matchedSpeciesConfidence_fraction",
|
433
|
"ValidMatchedTaxon"."matchedInfraspecificEpithet",
|
434
|
"ValidMatchedTaxon"."*Name_matched.Infraspecific_epithet_score",
|
435
|
"ValidMatchedTaxon"."identificationQualifier",
|
436
|
"ValidMatchedTaxon"."morphospeciesSuffix",
|
437
|
"ValidMatchedTaxon"."taxonomicStatus",
|
438
|
"ValidMatchedTaxon".scrubbed_taxon_name_no_author,
|
439
|
"ValidMatchedTaxon".scrubbed_author,
|
440
|
"ValidMatchedTaxon".scrubbed_taxon_rank,
|
441
|
"ValidMatchedTaxon"."acceptedScientificNameID",
|
442
|
"ValidMatchedTaxon"."*Name_matched.Accepted_name_species",
|
443
|
"ValidMatchedTaxon".scrubbed_family,
|
444
|
"ValidMatchedTaxon"."*Name_matched.Selected",
|
445
|
"ValidMatchedTaxon"."*Name_matched.Source",
|
446
|
"ValidMatchedTaxon"."*Name_matched.Warnings",
|
447
|
"ValidMatchedTaxon"."*Name_matched.Accepted_name_lsid",
|
448
|
"ValidMatchedTaxon".taxon_scrub__is_valid_match,
|
449
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_parsed_taxon_rank,
|
450
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_parsed_family,
|
451
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus,
|
452
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet,
|
453
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_rank,
|
454
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_epithet,
|
455
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_parsed_author,
|
456
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_parsed_taxon_name_no_author
|
457
|
FROM ("ValidMatchedTaxon"
|
458
|
LEFT JOIN "taxon_scrub.scrubbed_unique_taxon_name.*" USING (scrubbed_unique_taxon_name));
|
459
|
|
460
|
|
461
|
--
|
462
|
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: -
|
463
|
--
|
464
|
|
465
|
COMMENT ON VIEW taxon_scrub IS 'to update, use * as the column list';
|
466
|
|
467
|
|
468
|
--
|
469
|
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace:
|
470
|
--
|
471
|
|
472
|
ALTER TABLE ONLY batch_download_settings
|
473
|
ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id);
|
474
|
|
475
|
|
476
|
--
|
477
|
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace:
|
478
|
--
|
479
|
|
480
|
ALTER TABLE ONLY batch
|
481
|
ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time);
|
482
|
|
483
|
|
484
|
--
|
485
|
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace:
|
486
|
--
|
487
|
|
488
|
ALTER TABLE ONLY batch
|
489
|
ADD CONSTRAINT batch_pkey PRIMARY KEY (id);
|
490
|
|
491
|
|
492
|
--
|
493
|
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace:
|
494
|
--
|
495
|
|
496
|
ALTER TABLE ONLY client_version
|
497
|
ADD CONSTRAINT client_version_pkey PRIMARY KEY (id);
|
498
|
|
499
|
|
500
|
--
|
501
|
-- Name: tnrs_Name_submitted_key; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace:
|
502
|
--
|
503
|
|
504
|
ALTER TABLE ONLY tnrs
|
505
|
ADD CONSTRAINT "tnrs_Name_submitted_key" UNIQUE ("Name_submitted");
|
506
|
|
507
|
|
508
|
--
|
509
|
-- Name: tnrs_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: -; Tablespace:
|
510
|
--
|
511
|
|
512
|
ALTER TABLE ONLY tnrs
|
513
|
ADD CONSTRAINT tnrs_pkey PRIMARY KEY (batch, "Name_number");
|
514
|
|
515
|
|
516
|
--
|
517
|
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: -; Tablespace:
|
518
|
--
|
519
|
|
520
|
CREATE INDEX batch_client_version_idx ON batch USING btree (client_version);
|
521
|
|
522
|
|
523
|
--
|
524
|
-- Name: tnrs__valid_match; Type: INDEX; Schema: TNRS; Owner: -; Tablespace:
|
525
|
--
|
526
|
|
527
|
CREATE UNIQUE INDEX tnrs__valid_match ON tnrs USING btree ("Name_submitted") WHERE is_valid_match;
|
528
|
|
529
|
|
530
|
--
|
531
|
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: -
|
532
|
--
|
533
|
|
534
|
CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill();
|
535
|
|
536
|
|
537
|
--
|
538
|
-- Name: tnrs_populate_fields; Type: TRIGGER; Schema: TNRS; Owner: -
|
539
|
--
|
540
|
|
541
|
CREATE TRIGGER tnrs_populate_fields BEFORE INSERT OR UPDATE ON tnrs FOR EACH ROW EXECUTE PROCEDURE tnrs_populate_fields();
|
542
|
|
543
|
|
544
|
--
|
545
|
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
|
546
|
--
|
547
|
|
548
|
ALTER TABLE ONLY batch
|
549
|
ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
550
|
|
551
|
|
552
|
--
|
553
|
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
|
554
|
--
|
555
|
|
556
|
ALTER TABLE ONLY batch_download_settings
|
557
|
ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
558
|
|
559
|
|
560
|
--
|
561
|
-- Name: tnrs_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: -
|
562
|
--
|
563
|
|
564
|
ALTER TABLE ONLY tnrs
|
565
|
ADD CONSTRAINT tnrs_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
566
|
|
567
|
|
568
|
--
|
569
|
-- Name: TNRS; Type: ACL; Schema: -; Owner: -
|
570
|
--
|
571
|
|
572
|
REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC;
|
573
|
REVOKE ALL ON SCHEMA "TNRS" FROM bien;
|
574
|
GRANT ALL ON SCHEMA "TNRS" TO bien;
|
575
|
GRANT USAGE ON SCHEMA "TNRS" TO bien_read;
|
576
|
|
577
|
|
578
|
--
|
579
|
-- Name: tnrs; Type: ACL; Schema: TNRS; Owner: -
|
580
|
--
|
581
|
|
582
|
REVOKE ALL ON TABLE tnrs FROM PUBLIC;
|
583
|
REVOKE ALL ON TABLE tnrs FROM bien;
|
584
|
GRANT ALL ON TABLE tnrs TO bien;
|
585
|
GRANT SELECT ON TABLE tnrs TO bien_read;
|
586
|
|
587
|
|
588
|
--
|
589
|
-- Name: MatchedTaxon; Type: ACL; Schema: TNRS; Owner: -
|
590
|
--
|
591
|
|
592
|
REVOKE ALL ON TABLE "MatchedTaxon" FROM PUBLIC;
|
593
|
REVOKE ALL ON TABLE "MatchedTaxon" FROM bien;
|
594
|
GRANT ALL ON TABLE "MatchedTaxon" TO bien;
|
595
|
GRANT SELECT ON TABLE "MatchedTaxon" TO bien_read;
|
596
|
|
597
|
|
598
|
--
|
599
|
-- Name: ValidMatchedTaxon; Type: ACL; Schema: TNRS; Owner: -
|
600
|
--
|
601
|
|
602
|
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM PUBLIC;
|
603
|
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM bien;
|
604
|
GRANT ALL ON TABLE "ValidMatchedTaxon" TO bien;
|
605
|
GRANT SELECT ON TABLE "ValidMatchedTaxon" TO bien_read;
|
606
|
|
607
|
|
608
|
--
|
609
|
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: ACL; Schema: TNRS; Owner: -
|
610
|
--
|
611
|
|
612
|
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM PUBLIC;
|
613
|
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM bien;
|
614
|
GRANT ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien;
|
615
|
GRANT SELECT ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien_read;
|
616
|
|
617
|
|
618
|
--
|
619
|
-- Name: taxon_scrub; Type: ACL; Schema: TNRS; Owner: -
|
620
|
--
|
621
|
|
622
|
REVOKE ALL ON TABLE taxon_scrub FROM PUBLIC;
|
623
|
REVOKE ALL ON TABLE taxon_scrub FROM bien;
|
624
|
GRANT ALL ON TABLE taxon_scrub TO bien;
|
625
|
GRANT SELECT ON TABLE taxon_scrub TO bien_read;
|
626
|
|
627
|
|
628
|
--
|
629
|
-- PostgreSQL database dump complete
|
630
|
--
|
631
|
|