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Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  _archive 7837 almost 12 years Aaron Marcuse-Kubitza inputs/.TNRS/: Moved no longer needed public.un...
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  tnrs 9972 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs: added Is_homonym...
  verify 13401 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
.htaccess 387 Bytes 8511 over 11 years Aaron Marcuse-Kubitza web/**/.htaccess: appended query strings for ex...
Makefile 27 Bytes 10178 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
data.sql 12.8 KB 11708 about 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql, data.sql: updated for ...
data.sql.run 327 Bytes 13372 over 10 years Aaron Marcuse-Kubitza fix: lib/runscripts/file.pg.sql.run: removed in...
grants.sql 1.55 KB 13437 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/.TNRS/grants.sql: added GRANT st...
import_order.txt 7 Bytes 7838 almost 12 years Aaron Marcuse-Kubitza inputs/.TNRS/import_order.txt: Removed public.u...
run 87 Bytes 10294 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/: switched to new-style import. be...
schema.sql 19.5 KB 13441 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/.TNRS/schema.sql: taxon_scrub, e...
schema.sql.run 134 Bytes 13372 over 10 years Aaron Marcuse-Kubitza fix: lib/runscripts/file.pg.sql.run: removed in...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
  • svn:ignore: *

Latest revisions

# Date Author Comment
13441 05/13/2014 03:46 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: taxon_scrub, etc.: undid rename of accepted name columns to scrubbed_* (r13435), because these are actually not the same (scrubbed_* is the combination of accepted and no-opinion names). the accepted name columns will now be named accepted_*, following the standard naming scheme.

13439 05/13/2014 03:13 AM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: taxon_scrub, etc.: scrubbed_*: use columns from MatchedTaxon whenever possible, to as much as possible avoid the need to join to taxon_scrub.scrubbed_unique_taxon_name.*

13437 05/13/2014 02:29 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/grants.sql: added GRANT statements from schema.sql because these aren't run by `make inputs/.TNRS/reinstall`

13401 05/03/2014 02:03 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: add: verify/: also svn:ignore *.log

13372 05/01/2014 01:29 PM Aaron Marcuse-Kubitza

fix: lib/runscripts/file.pg.sql.run: removed include of in_datasrc_dir.run, because this location does not apply to all .sql export scripts

12779 03/20/2014 07:58 PM Aaron Marcuse-Kubitza

*{.sh,run}: use new begin_target instead of `echo_func; set_make_vars`

12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11965 01/16/2014 01:22 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: scrubbed_family: Name_matched_accepted_family was missing from the TNRS results at one point, so we are now using Family_matched as a workaround to populate this. the workaround is for accepted names only, as no opinion names do not have an Accepted_name_family to prepend to the scrubbed name to parse.

11964 01/16/2014 01:19 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: reexported from live DB, which changes the element order

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