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<?php
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require_once dirname(__FILE__)."/util.php";
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$self_dir = ensure_suffix("/", dirname($_SERVER["SCRIPT_NAME"]));
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function by_prefix($url, $main_url=null)
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{
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if (!isset($main_url)) $main_url = $url;
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return function($path) use($url, $main_url)
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{
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return $path ? $url.$path : $main_url;
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};
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}
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$h_level = 5;
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$root = $_SERVER["SERVER_NAME"].rm_suffix("/", $self_dir)."?";
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# instead of PATH_INFO, to support the Apache ErrorDocument directive
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$rel_fs_path = rm_prefix($self_dir, $_SERVER["REQUEST_URI"]);
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$path = parse_dot_path($rel_fs_path);
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$ns = strtolower($path->head);
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function add_ns($name, $path_pat, $url_func)
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{
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global $root, $h_level, $path, $ns;
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if (is_string($url_func)) $url_func = by_prefix($url_func);
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print("<h".$h_level.' id="'.$name.'">'.$root.'<big><a href="http://'.$root
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.$name.'">'.$name."</a></big><i>".$path_pat."</i></h".$h_level.">\n");
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if ($ns === strtolower($name)) # found match, so redirect
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{
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header("Location: ".strip_url($url_func($path->tail)));
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ob_end_flush();
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exit;
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}
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}
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function custom_separator($url, $sep, $main_url=null)
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{
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if (!isset($main_url)) $main_url = $url;
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return function($path) use($url, $sep, $main_url)
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{
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if ($path === "") return $main_url;
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$path = parse_dot_path($path);
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return $url.join_non_empty($sep, array($path->head, $path->tail));
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};
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}
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function fragment_override($url, $fragment=null)
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{
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return function($path) use($url, $fragment)
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{
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if (!isset($fragment))
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{
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$path = parse_dot_path($path);
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$fragment = $path->head;
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$path = $path->tail;
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}
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if ($path !== "") $url .= "?".$path;
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return $url."#".$fragment;
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};
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}
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function phpPgAdmin($url, $table=null)
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{
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return function($path) use($url, $table)
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{
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$path = join_non_empty(".", array($table, $path));
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$path = parse_dot_path($path);
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$subject = "schema";
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if ($path->head !== "")
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{
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$url .= "&table=".$path->head;
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if ($path->tail !== "")
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{
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$url .= "&column=".$path->tail;
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$subject = "column";
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}
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else $subject = "table";
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}
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$url .= "&subject=".$subject;
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return $url;
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};
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}
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function phpMyAdmin($url, $table=null)
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{
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return function($path) use($url, $table)
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{
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$path = join_non_empty(".", array($table, $path));
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$path = parse_dot_path($path);
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$target = "db_structure";
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if ($path->head !== "")
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{
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$url .= "&table=".$path->head;
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if ($path->tail !== "") $url .= "&column=".$path->tail;
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$target = "tbl_structure";
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}
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$url .= "&target=".$target.".php";
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return $url;
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};
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}
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ob_start(); // delay output in case there is a redirect
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?>
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<title>VegPath</title>
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<link rel="stylesheet" type="text/css" href="/main.css" />
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<style type="text/css">
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h1 {color: green;}
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</style>
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<script type="text/javascript" src="/util.js"></script>
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</head>
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<body>
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<h1>VegPath <small><a href="http://en.wikipedia.org/wiki/PURL">persistent URLs</a> for vegetation resources</small></h1>
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<div>Supported URL patterns: <small>(elements in <i>italics</i> are optional)</small></div>
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<?php
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# add and list URLs
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$Redmine = "https://projects.nceas.ucsb.edu/nceas/projects/bien";
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$Redmine_svn = $Redmine."/repository/raw";
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$nimoy = "http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php";
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function nimoy_db($db) { global $nimoy; return phpMyAdmin($nimoy."?db=".$db); }
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$IH_db = phpMyAdmin($nimoy."?db=bien3_adb", "ih");
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$SALVIAS = "http://salvias.net/Documents/salvias_data_dictionary.html";
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?>
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<table border="0" cellspacing="0" cellpadding="0">
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<tr valign="top">
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<td nowrap="nowrap"><h2>Terms</h2></td>
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<td nowrap="nowrap"><h2> </h2></td>
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<td nowrap="nowrap"><h2>Data</h2></td>
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</tr>
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<tr valign="top">
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<td nowrap="nowrap">
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<?php
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print("<blockquote>\n");
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print("<h3>Exchange schemas</h3>");
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{
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print("<blockquote>\n");
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add_ns("VegCore", ".term", "https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#");
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add_ns("DwC", ".term", "http://rs.tdwg.org/dwc/terms/#");
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{
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print("<blockquote>\n"); $h_level++;
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add_ns("DwC.history", ".term", "http://rs.tdwg.org/dwc/terms/history/#");
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print("</blockquote>\n"); $h_level--;
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}
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add_ns("TCS", "#/XPath", "http://www.tdwg.org/standards/117/download/#/v101.xsd");
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add_ns("VegX", "#/XPath", "http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd");
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print("</blockquote>\n");
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}
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print("<h3>Aggregators</h3>");
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{
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print("<blockquote>\n");
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add_ns("VegBank", ".table.column", custom_separator("http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=",
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"#", "http://vegbank.org/get/index/dba_tabledescription"));
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add_ns("SALVIAS", ".table.column", by_prefix($SALVIAS."#Plot_", $SALVIAS));
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{
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print("<blockquote>\n"); $h_level++;
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add_ns("SALVIAS.db", ".table.column", nimoy_db("salvias_plots"));
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add_ns("SALVIAS.users", ".table.column", nimoy_db("salvias_users"));
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print("</blockquote>\n"); $h_level--;
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}
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add_ns("BIEN2", "", $nimoy."?target=server_databases.php");
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{
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print("<blockquote>\n"); $h_level++;
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add_ns("BIEN2.web", ".table.column", nimoy_db("bien_web"));
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add_ns("BIEN2.core", ".table.column", nimoy_db("bien2"));
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add_ns("BIEN2.geoscrub", ".table.column", nimoy_db("geoscrub"));
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add_ns("BIEN2.staging", ".table.column", nimoy_db("bien2_staging"));
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print("</blockquote>\n"); $h_level--;
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}
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add_ns("VegBIEN", ".table.column", phpPgAdmin("http://vegbiendev.nceas.ucsb.edu/phppgadmin/redirect.php?server=localhost%3A5432%3Aallow&database=vegbien&schema=public"));
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print("</blockquote>\n");
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}
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print("<h3>Primary databases</h3>");
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{
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print("<blockquote>\n");
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add_ns("TNRS", ".term", fragment_override("http://tnrs.iplantcollaborative.org/instructions.html", "download_results"));
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add_ns("CTFS", "", $Redmine."/wiki/CTFS");
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{
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print("<blockquote>\n"); $h_level++;
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add_ns("CTFS.schema", ".table.column", $Redmine_svn."/inputs/CTFS/_archive/DBv5.txt#");
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add_ns("CTFS.tables", ".table", fragment_override($Redmine."/wiki/CTFS", "Tables"));
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add_ns("CTFS.terms", ".term", $Redmine_svn."/inputs/CTFS/_src/ctfs-comments_worksheet.xls#");
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print("</blockquote>\n"); $h_level--;
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}
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add_ns("IH.db", ".term", $IH_db);
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print("</blockquote>\n");
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195
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}
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print("<h3>People</h3>");
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197
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{
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198
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print("<blockquote>\n");
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add_ns("Brad", "", "mailto:bboyleATemail.arizona.edu");
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{
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201
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print("<blockquote>\n"); $h_level++;
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$Brad_Boyle_VegCore = $Redmine_svn."/schemas/VegCore/Brad_Boyle";
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203
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add_ns("Brad.data-provenance", ".term", $Brad_Boyle_VegCore."/BIEN%20database%20entities%20related%20to%20data%20provenance%20and%20ownership.docx#");
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204
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add_ns("Brad.DwC-IDs.2013-2-7", ".term", $Brad_Boyle_VegCore."/vegbien_identifiers.xlsx#");
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add_ns("Brad.DwC-IDs.2013-1-31", ".term", $Brad_Boyle_VegCore."/vegbien_identifier_examples.xlsx#");
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print("</blockquote>\n"); $h_level--;
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207
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}
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208
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print("</blockquote>\n");
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209
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}
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210
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print("</blockquote>\n");
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211
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?>
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212
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</td>
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213
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<td nowrap="nowrap"></td>
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214
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<td nowrap="nowrap">
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215
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<?php
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216
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print("<blockquote>\n");
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217
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print("<h3>Institutions</h3>");
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{
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219
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print("<blockquote>\n");
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220
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add_ns("IH", ".herbarium_code", by_prefix("http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+%3D+%27IH+Herbarium%27&col_NamOrganisationAcronym=",
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221
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"http://sweetgum.nybg.org/ih/"));
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222
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print("</blockquote>\n");
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223
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}
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224
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print("</blockquote>\n");
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225
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?>
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226
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</td>
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227
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</tr>
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228
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</table>
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229
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<?php
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230
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if (ends_with($root, '#')) # URL shortener requires fragment redirect
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231
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{
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232
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?>
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233
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<script type="text/javascript">
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234
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var loc = document.location
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235
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if (loc.hash) document.location = '?'+rm_prefix('#', loc.hash)
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236
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</script>
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237
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<?php
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238
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}
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239
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?>
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240
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<p> </p>
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241
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<?php
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242
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ob_end_flush();
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243
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244
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# full directory index
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245
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# to fix bug, only display if invoked as "__.org/", not "__.org/index.php"
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246
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if (substr($_SERVER["SCRIPT_URI"], -1) === '/')
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247
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fpassthru(fopen($_SERVER["SCRIPT_URI"]."all?".$_SERVER["QUERY_STRING"], "r"));
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248
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?>
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249
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</body>
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250
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</html>
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