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Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  Taxon 13113 over 10 years Aaron Marcuse-Kubitza fix: inputs/test_taxonomic_names/Taxon/map.csv:...
  _scrub 13590 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: tnrs_input_name: don't scr...
  logs 10169 over 11 years Aaron Marcuse-Kubitza inputs/*/logs: updated svn:ignore
  verify 13401 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
Makefile 27 Bytes 10177 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
README.TXT 1.13 KB 5217 about 12 years Aaron Marcuse-Kubitza Added inputs/test_taxonomic_names/README.TXT wi...
import_order.txt 13 Bytes 10109 over 11 years Aaron Marcuse-Kubitza empty inputs/*/import_order.txt: added subdirs ...
run 87 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
test_scrub 937 Bytes 10788 over 11 years Aaron Marcuse-Kubitza inputs/test_taxonomic_names/test_scrub: added s...
  • svn:ignore: *

Latest revisions

# Date Author Comment
13590 06/02/2014 04:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

13579 05/31/2014 10:28 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: populate match_num

13574 05/31/2014 08:11 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/*: updated to TNRS schema

13401 05/03/2014 02:03 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: add: verify/: also svn:ignore *.log

13113 04/10/2014 01:25 PM Aaron Marcuse-Kubitza

fix: inputs/test_taxonomic_names/Taxon/map.csv: scientificName: remapped to scientificName instead of taxonName as this does include the author for some names

12968 03/29/2014 04:06 AM Aaron Marcuse-Kubitza

*{.sh,run}: runscript targets: use begin_target instead of echo_func so the target name is properly echoed. note that this requires using with_rm so that $rm is properly progagated to applicable invoked targets. (previously, $rm was progagated to all invoked targets. note that with_rm only works inside a runscript target that starts with begin_target.)

12018 02/02/2014 12:49 AM Aaron Marcuse-Kubitza

inputs/input.Makefile: add!: verify/: also svn:ignore *.tsv, *.txt

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

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