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| Revision:
Name Size Revision Age Author Comment
  BIEN2 12779 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: use new begin_target instead of `ec...
  _archive 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  _license 13400 about 10 years Aaron Marcuse-Kubitza added validation/aggregating/plots/VegBank/bien...
  backups 13563 about 10 years Aaron Marcuse-Kubitza backups/TNRS.backup.md5: updated
  bin 13309 about 10 years Aaron Marcuse-Kubitza bin/in_place: diff: use --brief to avoid scanni...
  config 13553 about 10 years Aaron Marcuse-Kubitza removed no longer used config/VirtualBox_VMs/Ve...
  derived 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  downloads 13537 about 10 years Aaron Marcuse-Kubitza added downloads/
  exports 13568 about 10 years Aaron Marcuse-Kubitza exports/2014-3-11.Jeff_Ott.climatic_range_deter...
  inputs 13591 about 10 years Aaron Marcuse-Kubitza lib/tnrs.py: switched to downloading all matche...
  issues 12124 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
  lib 13591 about 10 years Aaron Marcuse-Kubitza lib/tnrs.py: switched to downloading all matche...
  mappings 13115 about 10 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: mapped subspecies...
  planning 13513 about 10 years Aaron Marcuse-Kubitza planning/meetings/BIEN conference call availabi...
  schemas 13589 about 10 years Aaron Marcuse-Kubitza fix: inputs/.TNRS/schema.sql: added back index ...
  validation 13434 about 10 years Aaron Marcuse-Kubitza validation/aggregating/plots/bien3_validations_...
  web 13460 about 10 years Aaron Marcuse-Kubitza bugfix: web/.phpPgAdmin/.htaccess: only append ...
  wiki 12124 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
.htaccess 326 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_filter.upload 33 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
.rsync_ignore 12 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
LICENSE.TXT 6.18 KB 12124 over 10 years Aaron Marcuse-Kubitza **/LICENSE.TXT: corrected "it recommended" to "...
Makefile 13.3 KB 13419 about 10 years Aaron Marcuse-Kubitza bugfix: /Makefile: install: use schemas/public/...
README.TXT 33.7 KB 13494 about 10 years Aaron Marcuse-Kubitza /README.TXT: to back up the vegbiendev database...
fix_perms 97 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
map 1001 Bytes 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
new_terms.csv 80.2 KB 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
run 518 Bytes 12968 over 10 years Aaron Marcuse-Kubitza *{.sh,run}: runscript targets: use begin_target...
unmapped_terms.csv 33 KB 11970 over 10 years Aaron Marcuse-Kubitza moved everything into /trunk/ to create the sta...
  • svn:ignore: extern

Latest revisions

# Date Author Comment
13591 06/02/2014 04:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: switched to downloading all matches per name, as is needed to implement #917. note that this will break the parts of the schema that use the tnrs table, until Brad's match-picking algorithm can be implemented, but this tradeoff is necessary to be able to begin scrubbing sooner (Martha; wiki.vegpath.org/2014-05-29_conference_call#TNRS)

13590 06/02/2014 04:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

13589 06/02/2014 04:27 AM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: added back index on Name_submitted, which is needed for tnrs_input_name to work properly (now that there is no automatic index created by a unique constraint)

13588 06/02/2014 04:08 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

13587 06/02/2014 03:43 AM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: tnrs: removed unique constraint on Name_submitted, Name_matched because there can be more than one match with the same Name_matched (but different accepted names, etc.)

13586 06/01/2014 09:00 PM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: tnrs.tnrs__valid_match index: made it non-unique to allow multiple matches per name, as is needed to implement #917

13585 06/01/2014 05:00 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: tnrs__match_num__fill(): only fill if not set, to support case where tnrs is being restored from a .sql file (where match_num is already set)

13584 06/01/2014 04:36 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: documented runtime to add a constraint (3 min)

13583 06/01/2014 04:35 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: unique constraint on Name_submitted: added Name_matched to allow multiple matches per name, as is needed to implement #917

13582 06/01/2014 03:44 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: documented how to populate a new column

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