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Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  _archive 7837 almost 12 years Aaron Marcuse-Kubitza inputs/.TNRS/: Moved no longer needed public.un...
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  tnrs 9972 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs: added Is_homonym...
  verify 13401 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
.htaccess 387 Bytes 8511 over 11 years Aaron Marcuse-Kubitza web/**/.htaccess: appended query strings for ex...
Makefile 27 Bytes 10178 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
data.sql 22 KB 13591 over 10 years Aaron Marcuse-Kubitza lib/tnrs.py: switched to downloading all matche...
data.sql.run 369 Bytes 13572 over 10 years Aaron Marcuse-Kubitza inputs/.TNRS/data.sql.run: refresh(): documente...
grants.sql 1.55 KB 13437 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/.TNRS/grants.sql: added GRANT st...
import_order.txt 7 Bytes 7838 almost 12 years Aaron Marcuse-Kubitza inputs/.TNRS/import_order.txt: Removed public.u...
run 87 Bytes 10294 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/: switched to new-style import. be...
schema.sql 26.8 KB 13609 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/.TNRS/schema.sql: MatchedTaxon_m...
schema.sql.run 134 Bytes 13372 over 10 years Aaron Marcuse-Kubitza fix: lib/runscripts/file.pg.sql.run: removed in...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
  • svn:ignore: *

Latest revisions

# Date Author Comment
13609 06/03/2014 10:36 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: MatchedTaxon_modify(): updated to include taxon_scrub derived fields

13607 06/03/2014 10:21 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: *_modify(): allow running without a view_query, as recreate_view() now supports this

13591 06/02/2014 04:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: switched to downloading all matches per name, as is needed to implement #917. note that this will break the parts of the schema that use the tnrs table, until Brad's match-picking algorithm can be implemented, but this tradeoff is necessary to be able to begin scrubbing sooner (Martha; wiki.vegpath.org/2014-05-29_conference_call#TNRS)

13590 06/02/2014 04:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

13589 06/02/2014 04:27 AM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: added back index on Name_submitted, which is needed for tnrs_input_name to work properly (now that there is no automatic index created by a unique constraint)

13587 06/02/2014 03:43 AM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: tnrs: removed unique constraint on Name_submitted, Name_matched because there can be more than one match with the same Name_matched (but different accepted names, etc.)

13586 06/01/2014 09:00 PM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: tnrs.tnrs__valid_match index: made it non-unique to allow multiple matches per name, as is needed to implement #917

13585 06/01/2014 05:00 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: tnrs__match_num__fill(): only fill if not set, to support case where tnrs is being restored from a .sql file (where match_num is already set)

13584 06/01/2014 04:36 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: documented runtime to add a constraint (3 min)

13583 06/01/2014 04:35 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: unique constraint on Name_submitted: added Name_matched to allow multiple matches per name, as is needed to implement #917

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