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| Revision:
Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  _archive 7837 almost 12 years Aaron Marcuse-Kubitza inputs/.TNRS/: Moved no longer needed public.un...
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  tnrs 9972 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: tnrs: added Is_homonym...
  verify 13401 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
.htaccess 575 Bytes 13621 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/.TNRS/.htaccess: qsappend does n...
Makefile 27 Bytes 10178 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
data.sql 22 KB 13591 over 10 years Aaron Marcuse-Kubitza lib/tnrs.py: switched to downloading all matche...
data.sql.run 369 Bytes 13572 over 10 years Aaron Marcuse-Kubitza inputs/.TNRS/data.sql.run: refresh(): documente...
grants.sql 1.55 KB 13437 over 10 years Aaron Marcuse-Kubitza bugfix: inputs/.TNRS/grants.sql: added GRANT st...
import_order.txt 7 Bytes 7838 almost 12 years Aaron Marcuse-Kubitza inputs/.TNRS/import_order.txt: Removed public.u...
run 87 Bytes 10294 over 11 years Aaron Marcuse-Kubitza inputs/.TNRS/: switched to new-style import. be...
schema.sql 25.7 KB 13686 over 10 years Aaron Marcuse-Kubitza inputs/.TNRS/schema.sql: unsafe_taxon_names(): ...
schema.sql.run 134 Bytes 13372 over 10 years Aaron Marcuse-Kubitza fix: lib/runscripts/file.pg.sql.run: removed in...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
  • svn:ignore: *

Latest revisions

# Date Author Comment
13686 06/06/2014 06:47 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: unsafe_taxon_names(): removed the name with "spp." now that this TNRS bug (https://pods.iplantcollaborative.org/jira/browse/TNRS-193) has been fixed

13647 06/05/2014 07:24 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: *_modify(): removed the need to manually maintain copies of the dependent view definitions with the *s in place, because the *s are now added automatically by view_def_to_orig()

13646 06/05/2014 07:21 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: *_modify(): removed the need to manually maintain copies of the dependent view definitions with the *s in place, because the *s are now added automatically by view_def_to_orig()

13632 06/05/2014 03:39 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: added taxon_name_is_safe()

13631 06/05/2014 03:30 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: added unsafe_taxon_names()

13621 06/04/2014 01:53 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/.htaccess: qsappend does not support fragment, so append it separately

13609 06/03/2014 10:36 AM Aaron Marcuse-Kubitza

bugfix: inputs/.TNRS/schema.sql: MatchedTaxon_modify(): updated to include taxon_scrub derived fields

13607 06/03/2014 10:21 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: *_modify(): allow running without a view_query, as recreate_view() now supports this

13591 06/02/2014 04:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: switched to downloading all matches per name, as is needed to implement #917. note that this will break the parts of the schema that use the tnrs table, until Brad's match-picking algorithm can be implemented, but this tradeoff is necessary to be able to begin scrubbing sooner (Martha; wiki.vegpath.org/2014-05-29_conference_call#TNRS)

13590 06/02/2014 04:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).

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