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aaronmk
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--
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-- PostgreSQL database dump
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--
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SET statement_timeout = 0;
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SET lock_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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--
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-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: bien
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--
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CREATE SCHEMA "TNRS";
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ALTER SCHEMA "TNRS" OWNER TO bien;
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aaronmk
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--
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-- Name: SCHEMA "TNRS"; Type: COMMENT; Schema: -; Owner: bien
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--
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13579
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aaronmk
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COMMENT ON SCHEMA "TNRS" IS '
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IMPORTANT: when changing this schema, you must also make the same changes on vegbiendev:
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aaronmk
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on vegbiendev:
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# back up existing TNRS schema (in case of an accidental incorrect change):
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
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$ svn up
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$ svn di
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# make the changes shown in the diff
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## to change column types:
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SELECT util.set_col_types(''"TNRS".tnrs_match'', ARRAY[
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(''col'', ''new_type'')
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]::util.col_cast[]); -- runtime: 9 min ("531282 ms")
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$ rm=1 inputs/.TNRS/schema.sql.run
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# repeat until `svn di` shows no diff
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# back up new TNRS schema:
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
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';
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SET search_path = "TNRS", pg_catalog;
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--
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-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION batch__fill() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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new.id_by_time = new.time_submitted;
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new.id = COALESCE(new.id, new.id_by_time);
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RETURN new;
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END;
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$$;
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ALTER FUNCTION "TNRS".batch__fill() OWNER TO bien;
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--
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-- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION family_is_homonym(family text) RETURNS boolean
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LANGUAGE sql STABLE STRICT
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AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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ALTER FUNCTION "TNRS".family_is_homonym(family text) OWNER TO bien;
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--
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-- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean
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LANGUAGE sql STABLE STRICT
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AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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ALTER FUNCTION "TNRS".genus_is_homonym(genus text) OWNER TO bien;
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--
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-- Name: map_taxonomic_status(text, text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION map_taxonomic_status(taxonomic_status_verbatim text, accepted_taxon_name_no_author text) RETURNS text
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LANGUAGE sql IMMUTABLE
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AS $_$
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/* from http://wiki.vegpath.org/2013-11-14_conference_call#taxonomic-fields:
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"taxonomic_status should be accepted instead of synonym when an accepted name is
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available (this is not always the case when a name is marked as a synonym)" */
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SELECT CASE WHEN $2 IS NOT NULL THEN 'accepted' ELSE lower($1) END
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$_$;
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ALTER FUNCTION "TNRS".map_taxonomic_status(taxonomic_status_verbatim text, accepted_taxon_name_no_author text) OWNER TO bien;
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aaronmk
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--
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-- Name: taxon_name_is_safe(text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION taxon_name_is_safe(taxon_name text) RETURNS boolean
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LANGUAGE sql IMMUTABLE
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AS $_$
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SELECT NOT ($1 = ANY("TNRS".unsafe_taxon_names()))
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$_$;
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ALTER FUNCTION "TNRS".taxon_name_is_safe(taxon_name text) OWNER TO bien;
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--
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-- Name: tnrs__batch_begin(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION tnrs__batch_begin() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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PERFORM util.seq__reset('pg_temp.tnrs__match_num__seq', 0);
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RETURN NULL;
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END;
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$$;
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ALTER FUNCTION "TNRS".tnrs__batch_begin() OWNER TO bien;
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--
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-- Name: tnrs__match_num__fill(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION tnrs__match_num__fill() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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IF new.match_num IS NULL THEN
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new.match_num = "TNRS".tnrs__match_num__next();
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END IF;
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RETURN new;
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END;
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$$;
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ALTER FUNCTION "TNRS".tnrs__match_num__fill() OWNER TO bien;
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--
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-- Name: tnrs__match_num__next(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION tnrs__match_num__next() RETURNS bigint
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LANGUAGE sql
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AS $$
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SELECT nextval('pg_temp.tnrs__match_num__seq');
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$$;
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ALTER FUNCTION "TNRS".tnrs__match_num__next() OWNER TO bien;
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--
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-- Name: tnrs_populate_fields(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION tnrs_populate_fields() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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DECLARE
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"Specific_epithet_is_plant" boolean :=
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(CASE
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WHEN new."Infraspecific_epithet_matched" IS NOT NULL
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OR new."Infraspecific_epithet_2_matched" IS NOT NULL
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OR new."Specific_epithet_score" >= 0.9 -- fuzzy match
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THEN true
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ELSE NULL -- ambiguous
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END);
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never_homonym boolean = COALESCE(new."Author_score" >= 0.6, false);
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-- author disambiguates
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family_is_homonym boolean = NOT never_homonym
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AND "TNRS".family_is_homonym(new."Family_matched");
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genus_is_homonym boolean = NOT never_homonym
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AND "TNRS".genus_is_homonym(new."Genus_matched");
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matched_taxon_name_with_author text = NULLIF(concat_ws(' '
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, NULLIF(NULLIF(new."Name_matched_accepted_family", 'Unknown'),
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new."Name_matched")
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, NULLIF(new."Name_matched", 'No suitable matches found.')
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, new."Name_matched_author"
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), '');
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accepted_taxon_name_with_author text = NULLIF(concat_ws(' '
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, NULLIF(NULLIF(new."Accepted_name_family", 'Unknown'),
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new."Accepted_name")
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, new."Accepted_name"
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, new."Accepted_name_author"
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), '');
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BEGIN
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/* exclude homonyms because these are not valid matches (i.e. TNRS provides
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a name, but the name is not meaningful because it is not unambiguous). */
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new.is_valid_match = new."Taxonomic_status" != 'Invalid'
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AND COALESCE(CASE
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WHEN new."Family_score" = 1 AND NOT family_is_homonym -- exact match
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THEN true
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ELSE -- consider genus
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(CASE
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WHEN new."Genus_score" = 1 -- exact match
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THEN
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(CASE
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WHEN NOT genus_is_homonym THEN true
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ELSE "Specific_epithet_is_plant"
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END)
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WHEN new."Genus_score" >= 0.85 -- fuzzy match
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THEN "Specific_epithet_is_plant"
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ELSE NULL -- ambiguous
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END)
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END, false);
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new.scrubbed_unique_taxon_name = COALESCE(
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accepted_taxon_name_with_author, matched_taxon_name_with_author);
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RETURN new;
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END;
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$$;
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| 227 |
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ALTER FUNCTION "TNRS".tnrs_populate_fields() OWNER TO bien;
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--
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-- Name: FUNCTION tnrs_populate_fields(); Type: COMMENT; Schema: TNRS; Owner: bien
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--
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aaronmk
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COMMENT ON FUNCTION tnrs_populate_fields() IS '
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IMPORTANT: when changing this function, you must regenerate the derived cols:
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UPDATE "TNRS".tnrs_match SET "Name_submitted" = "Name_submitted"
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runtime: 30 min ("5564082 rows affected, 1918900 ms execution time")
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VACUUM ANALYZE "TNRS".tnrs_match -- to remove previous rows
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runtime: 1.5 min ("92633 ms")
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';
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| 241 |
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| 242 |
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--
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| 243 |
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-- Name: unsafe_taxon_names(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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| 245 |
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CREATE FUNCTION unsafe_taxon_names() RETURNS text[]
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LANGUAGE sql IMMUTABLE
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| 248 |
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AS $$
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| 249 |
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SELECT ARRAY[
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| 250 |
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]::text[]
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$$;
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| 252 |
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| 253 |
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ALTER FUNCTION "TNRS".unsafe_taxon_names() OWNER TO bien;
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| 255 |
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SET default_tablespace = '';
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| 257 |
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SET default_with_oids = false;
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| 259 |
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--
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| 261 |
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-- Name: tnrs_match; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
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| 262 |
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--
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| 263 |
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| 264 |
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aaronmk
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CREATE TABLE tnrs_match (
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| 265 |
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batch text DEFAULT now() NOT NULL,
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| 266 |
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match_num integer NOT NULL,
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| 267 |
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"Name_number" integer NOT NULL,
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| 268 |
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"Name_submitted" text NOT NULL,
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| 269 |
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"Overall_score" double precision,
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| 270 |
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"Name_matched" text,
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"Name_matched_rank" text,
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| 272 |
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"Name_score" double precision,
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| 273 |
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"Name_matched_author" text,
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| 274 |
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"Name_matched_url" text,
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| 275 |
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"Author_matched" text,
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| 276 |
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"Author_score" double precision,
|
| 277 |
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"Family_matched" text,
|
| 278 |
9972
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"Family_score" double precision,
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| 279 |
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"Name_matched_accepted_family" text,
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| 280 |
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"Genus_matched" text,
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| 281 |
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"Genus_score" double precision,
|
| 282 |
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"Specific_epithet_matched" text,
|
| 283 |
9972
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"Specific_epithet_score" double precision,
|
| 284 |
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"Infraspecific_rank" text,
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| 285 |
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"Infraspecific_epithet_matched" text,
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| 286 |
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"Infraspecific_epithet_score" double precision,
|
| 287 |
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"Infraspecific_rank_2" text,
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| 288 |
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"Infraspecific_epithet_2_matched" text,
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| 289 |
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"Infraspecific_epithet_2_score" double precision,
|
| 290 |
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"Annotations" text,
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| 291 |
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"Unmatched_terms" text,
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| 292 |
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"Taxonomic_status" text,
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| 293 |
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"Accepted_name" text,
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| 294 |
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"Accepted_name_author" text,
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| 295 |
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"Accepted_name_rank" text,
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| 296 |
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"Accepted_name_url" text,
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| 297 |
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"Accepted_name_species" text,
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| 298 |
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"Accepted_name_family" text,
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| 299 |
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"Selected" text,
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| 300 |
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"Source" text,
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| 301 |
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"Warnings" text,
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| 302 |
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aaronmk
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"Accepted_name_lsid" text,
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| 303 |
13574
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aaronmk
|
is_valid_match boolean NOT NULL,
|
| 304 |
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scrubbed_unique_taxon_name text
|
| 305 |
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aaronmk
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);
|
| 306 |
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| 307 |
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| 308 |
13853
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aaronmk
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ALTER TABLE "TNRS".tnrs_match OWNER TO bien;
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| 309 |
5423
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aaronmk
|
|
| 310 |
|
|
--
|
| 311 |
13853
|
aaronmk
|
-- Name: TABLE tnrs_match; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 312 |
10786
|
aaronmk
|
--
|
| 313 |
|
|
|
| 314 |
13853
|
aaronmk
|
COMMENT ON TABLE tnrs_match IS '
|
| 315 |
13579
|
aaronmk
|
to remove columns or add columns at the end:
|
| 316 |
|
|
$ rm=1 inputs/.TNRS/data.sql.run
|
| 317 |
|
|
$ make schemas/remake
|
| 318 |
10786
|
aaronmk
|
|
| 319 |
13579
|
aaronmk
|
to add columns in the middle:
|
| 320 |
|
|
make the changes in inputs/.TNRS/schema.sql
|
| 321 |
|
|
$ inputs/.TNRS/data.sql.run refresh # re-run TNRS
|
| 322 |
|
|
$ make schemas/remake
|
| 323 |
13590
|
aaronmk
|
|
| 324 |
|
|
to populate a new column:
|
| 325 |
13853
|
aaronmk
|
ALTER TABLE "TNRS".tnrs_match DISABLE TRIGGER tnrs_populate_fields; --speeds up update
|
| 326 |
|
|
UPDATE "TNRS".tnrs_match SET "col" = value;
|
| 327 |
13590
|
aaronmk
|
-- runtime: 30 min ("5564201 rows affected, 1624829 ms execution time")
|
| 328 |
13853
|
aaronmk
|
ALTER TABLE "TNRS".tnrs_match ENABLE TRIGGER tnrs_populate_fields;
|
| 329 |
|
|
VACUUM ANALYZE "TNRS".tnrs_match --remove previous rows; runtime: 1.5 min ("92633 ms")
|
| 330 |
13590
|
aaronmk
|
|
| 331 |
|
|
to add a constraint: runtime: 3 min ("173620 ms")
|
| 332 |
13579
|
aaronmk
|
';
|
| 333 |
10786
|
aaronmk
|
|
| 334 |
13579
|
aaronmk
|
|
| 335 |
10786
|
aaronmk
|
--
|
| 336 |
9493
|
aaronmk
|
-- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: bien
|
| 337 |
5917
|
aaronmk
|
--
|
| 338 |
|
|
|
| 339 |
9493
|
aaronmk
|
CREATE VIEW "MatchedTaxon" AS
|
| 340 |
13853
|
aaronmk
|
SELECT s."*Name_matched.batch",
|
| 341 |
|
|
s."concatenatedScientificName",
|
| 342 |
|
|
s."matchedTaxonName",
|
| 343 |
|
|
s."matchedTaxonRank",
|
| 344 |
|
|
s."*Name_matched.Name_score",
|
| 345 |
|
|
s."matchedScientificNameAuthorship",
|
| 346 |
|
|
s."matchedScientificNameID",
|
| 347 |
|
|
s."*Name_matched.Author_score",
|
| 348 |
|
|
s."matchedFamilyConfidence_fraction",
|
| 349 |
|
|
s."matchedFamily",
|
| 350 |
|
|
s."matchedGenus",
|
| 351 |
|
|
s."matchedGenusConfidence_fraction",
|
| 352 |
|
|
s."matchedSpecificEpithet",
|
| 353 |
|
|
s."matchedSpeciesConfidence_fraction",
|
| 354 |
|
|
s."matchedInfraspecificEpithet",
|
| 355 |
|
|
s."*Name_matched.Infraspecific_epithet_score",
|
| 356 |
|
|
s."identificationQualifier",
|
| 357 |
|
|
s."morphospeciesSuffix",
|
| 358 |
|
|
s."taxonomicStatus",
|
| 359 |
|
|
s.accepted_taxon_name_no_author,
|
| 360 |
|
|
s.accepted_author,
|
| 361 |
|
|
s.accepted_taxon_rank,
|
| 362 |
|
|
s."acceptedScientificNameID",
|
| 363 |
|
|
s.accepted_species_binomial,
|
| 364 |
|
|
s.accepted_family,
|
| 365 |
|
|
s."*Name_matched.Selected",
|
| 366 |
|
|
s."*Name_matched.Source",
|
| 367 |
|
|
s."*Name_matched.Warnings",
|
| 368 |
|
|
s."*Name_matched.Accepted_name_lsid",
|
| 369 |
|
|
s.taxon_scrub__is_valid_match,
|
| 370 |
|
|
s.scrubbed_unique_taxon_name,
|
| 371 |
13574
|
aaronmk
|
CASE
|
| 372 |
|
|
WHEN (s.accepted_taxon_rank = 'family'::text) THEN concat_ws(' '::text, s.accepted_family, s."morphospeciesSuffix")
|
| 373 |
|
|
WHEN (s.accepted_taxon_rank = 'genus'::text) THEN concat_ws(' '::text, s.accepted_taxon_name_no_author, s."morphospeciesSuffix")
|
| 374 |
|
|
ELSE s.accepted_species_binomial
|
| 375 |
|
|
END AS accepted_morphospecies_binomial
|
| 376 |
13853
|
aaronmk
|
FROM ( SELECT tnrs_match.batch AS "*Name_matched.batch",
|
| 377 |
|
|
tnrs_match."Name_submitted" AS "concatenatedScientificName",
|
| 378 |
|
|
tnrs_match."Name_matched" AS "matchedTaxonName",
|
| 379 |
|
|
tnrs_match."Name_matched_rank" AS "matchedTaxonRank",
|
| 380 |
|
|
tnrs_match."Name_score" AS "*Name_matched.Name_score",
|
| 381 |
|
|
tnrs_match."Name_matched_author" AS "matchedScientificNameAuthorship",
|
| 382 |
|
|
tnrs_match."Name_matched_url" AS "matchedScientificNameID",
|
| 383 |
|
|
tnrs_match."Author_score" AS "*Name_matched.Author_score",
|
| 384 |
|
|
tnrs_match."Family_score" AS "matchedFamilyConfidence_fraction",
|
| 385 |
|
|
COALESCE(tnrs_match."Name_matched_accepted_family", tnrs_match."Accepted_name_family") AS "matchedFamily",
|
| 386 |
|
|
tnrs_match."Genus_matched" AS "matchedGenus",
|
| 387 |
|
|
tnrs_match."Genus_score" AS "matchedGenusConfidence_fraction",
|
| 388 |
|
|
tnrs_match."Specific_epithet_matched" AS "matchedSpecificEpithet",
|
| 389 |
|
|
tnrs_match."Specific_epithet_score" AS "matchedSpeciesConfidence_fraction",
|
| 390 |
|
|
tnrs_match."Infraspecific_epithet_matched" AS "matchedInfraspecificEpithet",
|
| 391 |
|
|
tnrs_match."Infraspecific_epithet_score" AS "*Name_matched.Infraspecific_epithet_score",
|
| 392 |
|
|
tnrs_match."Annotations" AS "identificationQualifier",
|
| 393 |
|
|
tnrs_match."Unmatched_terms" AS "morphospeciesSuffix",
|
| 394 |
|
|
map_taxonomic_status(tnrs_match."Taxonomic_status", tnrs_match."Accepted_name") AS "taxonomicStatus",
|
| 395 |
|
|
tnrs_match."Accepted_name" AS accepted_taxon_name_no_author,
|
| 396 |
|
|
tnrs_match."Accepted_name_author" AS accepted_author,
|
| 397 |
|
|
tnrs_match."Accepted_name_rank" AS accepted_taxon_rank,
|
| 398 |
|
|
tnrs_match."Accepted_name_url" AS "acceptedScientificNameID",
|
| 399 |
|
|
tnrs_match."Accepted_name_species" AS accepted_species_binomial,
|
| 400 |
|
|
tnrs_match."Accepted_name_family" AS accepted_family,
|
| 401 |
|
|
tnrs_match."Selected" AS "*Name_matched.Selected",
|
| 402 |
|
|
tnrs_match."Source" AS "*Name_matched.Source",
|
| 403 |
|
|
tnrs_match."Warnings" AS "*Name_matched.Warnings",
|
| 404 |
|
|
tnrs_match."Accepted_name_lsid" AS "*Name_matched.Accepted_name_lsid",
|
| 405 |
|
|
tnrs_match.is_valid_match AS taxon_scrub__is_valid_match,
|
| 406 |
|
|
tnrs_match.scrubbed_unique_taxon_name
|
| 407 |
|
|
FROM tnrs_match) s;
|
| 408 |
5917
|
aaronmk
|
|
| 409 |
|
|
|
| 410 |
9493
|
aaronmk
|
ALTER TABLE "TNRS"."MatchedTaxon" OWNER TO bien;
|
| 411 |
5917
|
aaronmk
|
|
| 412 |
|
|
--
|
| 413 |
13574
|
aaronmk
|
-- Name: VIEW "MatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 414 |
9762
|
aaronmk
|
--
|
| 415 |
|
|
|
| 416 |
13574
|
aaronmk
|
COMMENT ON VIEW "MatchedTaxon" IS '
|
| 417 |
|
|
to modify:
|
| 418 |
13853
|
aaronmk
|
SELECT util.recreate_view(''"TNRS"."MatchedTaxon"'', $$
|
| 419 |
|
|
SELECT __
|
| 420 |
13574
|
aaronmk
|
$$);
|
| 421 |
|
|
';
|
| 422 |
9762
|
aaronmk
|
|
| 423 |
|
|
|
| 424 |
|
|
--
|
| 425 |
13574
|
aaronmk
|
-- Name: Source; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
| 426 |
10786
|
aaronmk
|
--
|
| 427 |
|
|
|
| 428 |
13574
|
aaronmk
|
CREATE TABLE "Source" (
|
| 429 |
|
|
"*row_num" integer NOT NULL,
|
| 430 |
|
|
"sourceType" text DEFAULT 'aggregator'::text NOT NULL,
|
| 431 |
|
|
"datasetURL" text DEFAULT 'http://tnrs.iplantcollaborative.org/TNRSapp.html'::text NOT NULL,
|
| 432 |
|
|
CONSTRAINT nulls_mapped CHECK (true)
|
| 433 |
|
|
);
|
| 434 |
10786
|
aaronmk
|
|
| 435 |
|
|
|
| 436 |
13574
|
aaronmk
|
ALTER TABLE "TNRS"."Source" OWNER TO bien;
|
| 437 |
|
|
|
| 438 |
10786
|
aaronmk
|
--
|
| 439 |
13574
|
aaronmk
|
-- Name: COLUMN "Source"."sourceType"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 440 |
5423
|
aaronmk
|
--
|
| 441 |
|
|
|
| 442 |
13574
|
aaronmk
|
COMMENT ON COLUMN "Source"."sourceType" IS '
|
| 443 |
|
|
constant
|
| 444 |
|
|
';
|
| 445 |
5423
|
aaronmk
|
|
| 446 |
|
|
|
| 447 |
|
|
--
|
| 448 |
13574
|
aaronmk
|
-- Name: COLUMN "Source"."datasetURL"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 449 |
10786
|
aaronmk
|
--
|
| 450 |
|
|
|
| 451 |
13574
|
aaronmk
|
COMMENT ON COLUMN "Source"."datasetURL" IS '
|
| 452 |
|
|
constant
|
| 453 |
|
|
';
|
| 454 |
10786
|
aaronmk
|
|
| 455 |
|
|
|
| 456 |
|
|
--
|
| 457 |
13574
|
aaronmk
|
-- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: bien
|
| 458 |
10395
|
aaronmk
|
--
|
| 459 |
|
|
|
| 460 |
13574
|
aaronmk
|
CREATE VIEW "ValidMatchedTaxon" AS
|
| 461 |
13853
|
aaronmk
|
SELECT "MatchedTaxon"."*Name_matched.batch",
|
| 462 |
|
|
"MatchedTaxon"."concatenatedScientificName",
|
| 463 |
|
|
"MatchedTaxon"."matchedTaxonName",
|
| 464 |
|
|
"MatchedTaxon"."matchedTaxonRank",
|
| 465 |
|
|
"MatchedTaxon"."*Name_matched.Name_score",
|
| 466 |
|
|
"MatchedTaxon"."matchedScientificNameAuthorship",
|
| 467 |
|
|
"MatchedTaxon"."matchedScientificNameID",
|
| 468 |
|
|
"MatchedTaxon"."*Name_matched.Author_score",
|
| 469 |
|
|
"MatchedTaxon"."matchedFamilyConfidence_fraction",
|
| 470 |
|
|
"MatchedTaxon"."matchedFamily",
|
| 471 |
|
|
"MatchedTaxon"."matchedGenus",
|
| 472 |
|
|
"MatchedTaxon"."matchedGenusConfidence_fraction",
|
| 473 |
|
|
"MatchedTaxon"."matchedSpecificEpithet",
|
| 474 |
|
|
"MatchedTaxon"."matchedSpeciesConfidence_fraction",
|
| 475 |
|
|
"MatchedTaxon"."matchedInfraspecificEpithet",
|
| 476 |
|
|
"MatchedTaxon"."*Name_matched.Infraspecific_epithet_score",
|
| 477 |
|
|
"MatchedTaxon"."identificationQualifier",
|
| 478 |
|
|
"MatchedTaxon"."morphospeciesSuffix",
|
| 479 |
|
|
"MatchedTaxon"."taxonomicStatus",
|
| 480 |
|
|
"MatchedTaxon".accepted_taxon_name_no_author,
|
| 481 |
|
|
"MatchedTaxon".accepted_author,
|
| 482 |
|
|
"MatchedTaxon".accepted_taxon_rank,
|
| 483 |
|
|
"MatchedTaxon"."acceptedScientificNameID",
|
| 484 |
|
|
"MatchedTaxon".accepted_species_binomial,
|
| 485 |
|
|
"MatchedTaxon".accepted_family,
|
| 486 |
|
|
"MatchedTaxon"."*Name_matched.Selected",
|
| 487 |
|
|
"MatchedTaxon"."*Name_matched.Source",
|
| 488 |
|
|
"MatchedTaxon"."*Name_matched.Warnings",
|
| 489 |
|
|
"MatchedTaxon"."*Name_matched.Accepted_name_lsid",
|
| 490 |
|
|
"MatchedTaxon".taxon_scrub__is_valid_match,
|
| 491 |
|
|
"MatchedTaxon".scrubbed_unique_taxon_name,
|
| 492 |
13574
|
aaronmk
|
"MatchedTaxon".accepted_morphospecies_binomial
|
| 493 |
|
|
FROM "MatchedTaxon"
|
| 494 |
|
|
WHERE "MatchedTaxon".taxon_scrub__is_valid_match;
|
| 495 |
10395
|
aaronmk
|
|
| 496 |
|
|
|
| 497 |
13574
|
aaronmk
|
ALTER TABLE "TNRS"."ValidMatchedTaxon" OWNER TO bien;
|
| 498 |
10395
|
aaronmk
|
|
| 499 |
|
|
--
|
| 500 |
13574
|
aaronmk
|
-- Name: VIEW "ValidMatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 501 |
10395
|
aaronmk
|
--
|
| 502 |
|
|
|
| 503 |
13574
|
aaronmk
|
COMMENT ON VIEW "ValidMatchedTaxon" IS '
|
| 504 |
|
|
to update, use * as the column list
|
| 505 |
|
|
';
|
| 506 |
10395
|
aaronmk
|
|
| 507 |
|
|
|
| 508 |
|
|
--
|
| 509 |
10786
|
aaronmk
|
-- Name: batch; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
| 510 |
|
|
--
|
| 511 |
|
|
|
| 512 |
|
|
CREATE TABLE batch (
|
| 513 |
|
|
id text NOT NULL,
|
| 514 |
|
|
id_by_time text,
|
| 515 |
|
|
time_submitted timestamp with time zone DEFAULT now(),
|
| 516 |
|
|
client_version text
|
| 517 |
|
|
);
|
| 518 |
|
|
|
| 519 |
|
|
|
| 520 |
|
|
ALTER TABLE "TNRS".batch OWNER TO bien;
|
| 521 |
|
|
|
| 522 |
|
|
--
|
| 523 |
|
|
-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
| 524 |
|
|
--
|
| 525 |
|
|
|
| 526 |
|
|
CREATE TABLE batch_download_settings (
|
| 527 |
|
|
id text NOT NULL,
|
| 528 |
|
|
"E-mail" text,
|
| 529 |
|
|
"Id" text,
|
| 530 |
|
|
"Job type" text,
|
| 531 |
|
|
"Contains Id" boolean,
|
| 532 |
|
|
"Start time" text,
|
| 533 |
|
|
"Finish time" text,
|
| 534 |
|
|
"TNRS version" text,
|
| 535 |
|
|
"Sources selected" text,
|
| 536 |
|
|
"Match threshold" double precision,
|
| 537 |
|
|
"Classification" text,
|
| 538 |
|
|
"Allow partial matches?" boolean,
|
| 539 |
|
|
"Sort by source" boolean,
|
| 540 |
|
|
"Constrain by higher taxonomy" boolean
|
| 541 |
|
|
);
|
| 542 |
|
|
|
| 543 |
|
|
|
| 544 |
|
|
ALTER TABLE "TNRS".batch_download_settings OWNER TO bien;
|
| 545 |
|
|
|
| 546 |
|
|
--
|
| 547 |
|
|
-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 548 |
|
|
--
|
| 549 |
|
|
|
| 550 |
13579
|
aaronmk
|
COMMENT ON TABLE batch_download_settings IS '
|
| 551 |
|
|
stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt
|
| 552 |
|
|
';
|
| 553 |
10786
|
aaronmk
|
|
| 554 |
|
|
|
| 555 |
|
|
--
|
| 556 |
|
|
-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
| 557 |
|
|
--
|
| 558 |
|
|
|
| 559 |
|
|
CREATE TABLE client_version (
|
| 560 |
|
|
id text NOT NULL,
|
| 561 |
|
|
global_rev integer NOT NULL,
|
| 562 |
|
|
"/lib/tnrs.py rev" integer,
|
| 563 |
|
|
"/bin/tnrs_db rev" integer
|
| 564 |
|
|
);
|
| 565 |
|
|
|
| 566 |
|
|
|
| 567 |
|
|
ALTER TABLE "TNRS".client_version OWNER TO bien;
|
| 568 |
|
|
|
| 569 |
|
|
--
|
| 570 |
|
|
-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 571 |
|
|
--
|
| 572 |
|
|
|
| 573 |
13579
|
aaronmk
|
COMMENT ON TABLE client_version IS '
|
| 574 |
|
|
contains svn revisions
|
| 575 |
|
|
';
|
| 576 |
10786
|
aaronmk
|
|
| 577 |
|
|
|
| 578 |
|
|
--
|
| 579 |
|
|
-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 580 |
|
|
--
|
| 581 |
|
|
|
| 582 |
13579
|
aaronmk
|
COMMENT ON COLUMN client_version.global_rev IS '
|
| 583 |
|
|
from `svn info .` > Last Changed Rev
|
| 584 |
|
|
';
|
| 585 |
10786
|
aaronmk
|
|
| 586 |
|
|
|
| 587 |
|
|
--
|
| 588 |
|
|
-- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 589 |
|
|
--
|
| 590 |
|
|
|
| 591 |
13579
|
aaronmk
|
COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS '
|
| 592 |
|
|
from `svn info lib/tnrs.py` > Last Changed Rev
|
| 593 |
|
|
';
|
| 594 |
10786
|
aaronmk
|
|
| 595 |
|
|
|
| 596 |
|
|
--
|
| 597 |
|
|
-- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 598 |
|
|
--
|
| 599 |
|
|
|
| 600 |
13579
|
aaronmk
|
COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS '
|
| 601 |
|
|
from `svn info bin/tnrs_db` > Last Changed Rev
|
| 602 |
|
|
';
|
| 603 |
10786
|
aaronmk
|
|
| 604 |
|
|
|
| 605 |
|
|
--
|
| 606 |
13574
|
aaronmk
|
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: VIEW; Schema: TNRS; Owner: bien
|
| 607 |
|
|
--
|
| 608 |
|
|
|
| 609 |
|
|
CREATE VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" AS
|
| 610 |
13853
|
aaronmk
|
SELECT tnrs_match."Name_submitted" AS scrubbed_unique_taxon_name,
|
| 611 |
|
|
tnrs_match."Name_matched_rank" AS scrubbed_taxon_rank,
|
| 612 |
|
|
COALESCE(tnrs_match."Name_matched_accepted_family", tnrs_match."Family_matched") AS scrubbed_family,
|
| 613 |
|
|
tnrs_match."Genus_matched" AS scrubbed_genus,
|
| 614 |
|
|
tnrs_match."Specific_epithet_matched" AS scrubbed_specific_epithet,
|
| 615 |
|
|
tnrs_match."Infraspecific_rank" AS scrubbed_infraspecific_rank,
|
| 616 |
|
|
tnrs_match."Infraspecific_epithet_matched" AS scrubbed_infraspecific_epithet,
|
| 617 |
|
|
tnrs_match."Name_matched_author" AS scrubbed_author,
|
| 618 |
|
|
tnrs_match."Name_matched" AS scrubbed_taxon_name_no_author,
|
| 619 |
|
|
(tnrs_match."Name_matched" || COALESCE((' '::text || tnrs_match."Name_matched_author"), ''::text)) AS scrubbed_taxon_name_with_author
|
| 620 |
|
|
FROM tnrs_match;
|
| 621 |
13574
|
aaronmk
|
|
| 622 |
|
|
|
| 623 |
|
|
ALTER TABLE "TNRS"."taxon_scrub.scrubbed_unique_taxon_name.*" OWNER TO bien;
|
| 624 |
|
|
|
| 625 |
|
|
--
|
| 626 |
|
|
-- Name: VIEW "taxon_scrub.scrubbed_unique_taxon_name.*"; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 627 |
|
|
--
|
| 628 |
|
|
|
| 629 |
13579
|
aaronmk
|
COMMENT ON VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" IS '
|
| 630 |
13853
|
aaronmk
|
to modify:
|
| 631 |
|
|
SELECT util.recreate_view(''"TNRS"."taxon_scrub.scrubbed_unique_taxon_name.*"'', $$
|
| 632 |
|
|
SELECT __
|
| 633 |
|
|
$$);
|
| 634 |
|
|
|
| 635 |
13579
|
aaronmk
|
scrubbed_family: Name_matched_accepted_family was missing from the TNRS results at one point, so Family_matched is used as a workaround to populate this. the workaround is for *accepted names only*, as no opinion names do not have an Accepted_name_family to prepend to the scrubbed name to parse.
|
| 636 |
|
|
';
|
| 637 |
13574
|
aaronmk
|
|
| 638 |
|
|
|
| 639 |
|
|
--
|
| 640 |
|
|
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: bien
|
| 641 |
|
|
--
|
| 642 |
|
|
|
| 643 |
|
|
CREATE VIEW taxon_scrub AS
|
| 644 |
13853
|
aaronmk
|
SELECT "ValidMatchedTaxon".scrubbed_unique_taxon_name,
|
| 645 |
|
|
"ValidMatchedTaxon"."*Name_matched.batch",
|
| 646 |
|
|
"ValidMatchedTaxon"."concatenatedScientificName",
|
| 647 |
|
|
"ValidMatchedTaxon"."matchedTaxonName",
|
| 648 |
|
|
"ValidMatchedTaxon"."matchedTaxonRank",
|
| 649 |
|
|
"ValidMatchedTaxon"."*Name_matched.Name_score",
|
| 650 |
|
|
"ValidMatchedTaxon"."matchedScientificNameAuthorship",
|
| 651 |
|
|
"ValidMatchedTaxon"."matchedScientificNameID",
|
| 652 |
|
|
"ValidMatchedTaxon"."*Name_matched.Author_score",
|
| 653 |
|
|
"ValidMatchedTaxon"."matchedFamilyConfidence_fraction",
|
| 654 |
|
|
"ValidMatchedTaxon"."matchedFamily",
|
| 655 |
|
|
"ValidMatchedTaxon"."matchedGenus",
|
| 656 |
|
|
"ValidMatchedTaxon"."matchedGenusConfidence_fraction",
|
| 657 |
|
|
"ValidMatchedTaxon"."matchedSpecificEpithet",
|
| 658 |
|
|
"ValidMatchedTaxon"."matchedSpeciesConfidence_fraction",
|
| 659 |
|
|
"ValidMatchedTaxon"."matchedInfraspecificEpithet",
|
| 660 |
|
|
"ValidMatchedTaxon"."*Name_matched.Infraspecific_epithet_score",
|
| 661 |
|
|
"ValidMatchedTaxon"."identificationQualifier",
|
| 662 |
|
|
"ValidMatchedTaxon"."morphospeciesSuffix",
|
| 663 |
|
|
"ValidMatchedTaxon"."taxonomicStatus",
|
| 664 |
|
|
"ValidMatchedTaxon".accepted_taxon_name_no_author,
|
| 665 |
|
|
"ValidMatchedTaxon".accepted_author,
|
| 666 |
|
|
"ValidMatchedTaxon".accepted_taxon_rank,
|
| 667 |
|
|
"ValidMatchedTaxon"."acceptedScientificNameID",
|
| 668 |
|
|
"ValidMatchedTaxon".accepted_species_binomial,
|
| 669 |
|
|
"ValidMatchedTaxon".accepted_family,
|
| 670 |
|
|
"ValidMatchedTaxon"."*Name_matched.Selected",
|
| 671 |
|
|
"ValidMatchedTaxon"."*Name_matched.Source",
|
| 672 |
|
|
"ValidMatchedTaxon"."*Name_matched.Warnings",
|
| 673 |
|
|
"ValidMatchedTaxon"."*Name_matched.Accepted_name_lsid",
|
| 674 |
|
|
"ValidMatchedTaxon".taxon_scrub__is_valid_match,
|
| 675 |
|
|
"ValidMatchedTaxon".accepted_morphospecies_binomial,
|
| 676 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank,
|
| 677 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_family,
|
| 678 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus,
|
| 679 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet,
|
| 680 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_rank,
|
| 681 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_epithet,
|
| 682 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_author,
|
| 683 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_no_author,
|
| 684 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_with_author,
|
| 685 |
13574
|
aaronmk
|
CASE
|
| 686 |
|
|
WHEN ("taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank = 'family'::text) THEN concat_ws(' '::text, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_family, "ValidMatchedTaxon"."morphospeciesSuffix")
|
| 687 |
|
|
WHEN ("taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank = 'genus'::text) THEN concat_ws(' '::text, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_no_author, "ValidMatchedTaxon"."morphospeciesSuffix")
|
| 688 |
|
|
ELSE (("taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus || ' '::text) || "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet)
|
| 689 |
|
|
END AS scrubbed_morphospecies_binomial
|
| 690 |
|
|
FROM ("ValidMatchedTaxon"
|
| 691 |
|
|
LEFT JOIN "taxon_scrub.scrubbed_unique_taxon_name.*" USING (scrubbed_unique_taxon_name));
|
| 692 |
|
|
|
| 693 |
|
|
|
| 694 |
|
|
ALTER TABLE "TNRS".taxon_scrub OWNER TO bien;
|
| 695 |
|
|
|
| 696 |
|
|
--
|
| 697 |
|
|
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: bien
|
| 698 |
|
|
--
|
| 699 |
|
|
|
| 700 |
|
|
COMMENT ON VIEW taxon_scrub IS '
|
| 701 |
|
|
to modify:
|
| 702 |
13853
|
aaronmk
|
SELECT util.recreate_view(''"TNRS".taxon_scrub'', $$
|
| 703 |
|
|
SELECT __
|
| 704 |
13574
|
aaronmk
|
$$);
|
| 705 |
|
|
';
|
| 706 |
|
|
|
| 707 |
|
|
|
| 708 |
|
|
--
|
| 709 |
10395
|
aaronmk
|
-- Name: ~Source.map; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
| 710 |
|
|
--
|
| 711 |
|
|
|
| 712 |
|
|
CREATE TABLE "~Source.map" (
|
| 713 |
|
|
"from" text NOT NULL,
|
| 714 |
|
|
"to" text,
|
| 715 |
|
|
filter text,
|
| 716 |
|
|
notes text
|
| 717 |
|
|
);
|
| 718 |
|
|
|
| 719 |
|
|
|
| 720 |
|
|
ALTER TABLE "TNRS"."~Source.map" OWNER TO bien;
|
| 721 |
|
|
|
| 722 |
|
|
--
|
| 723 |
|
|
-- Data for Name: Source; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
| 724 |
|
|
--
|
| 725 |
|
|
|
| 726 |
10786
|
aaronmk
|
COPY "Source" ("*row_num", "sourceType", "datasetURL") FROM stdin;
|
| 727 |
13574
|
aaronmk
|
1 aggregator http://tnrs.iplantcollaborative.org/TNRSapp.html
|
| 728 |
10395
|
aaronmk
|
\.
|
| 729 |
|
|
|
| 730 |
|
|
|
| 731 |
|
|
--
|
| 732 |
10786
|
aaronmk
|
-- Data for Name: batch; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
| 733 |
|
|
--
|
| 734 |
|
|
|
| 735 |
|
|
COPY batch (id, id_by_time, time_submitted, client_version) FROM stdin;
|
| 736 |
13853
|
aaronmk
|
2014-06-25 16:26:37.716529-07 2014-06-25 16:26:37.716529-07 2014-06-25 16:26:37.716529-07 \N
|
| 737 |
10786
|
aaronmk
|
\.
|
| 738 |
|
|
|
| 739 |
|
|
|
| 740 |
|
|
--
|
| 741 |
|
|
-- Data for Name: batch_download_settings; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
| 742 |
|
|
--
|
| 743 |
|
|
|
| 744 |
|
|
COPY batch_download_settings (id, "E-mail", "Id", "Job type", "Contains Id", "Start time", "Finish time", "TNRS version", "Sources selected", "Match threshold", "Classification", "Allow partial matches?", "Sort by source", "Constrain by higher taxonomy") FROM stdin;
|
| 745 |
|
|
\.
|
| 746 |
|
|
|
| 747 |
|
|
|
| 748 |
|
|
--
|
| 749 |
|
|
-- Data for Name: client_version; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
| 750 |
|
|
--
|
| 751 |
|
|
|
| 752 |
|
|
COPY client_version (id, global_rev, "/lib/tnrs.py rev", "/bin/tnrs_db rev") FROM stdin;
|
| 753 |
|
|
\.
|
| 754 |
|
|
|
| 755 |
|
|
|
| 756 |
|
|
--
|
| 757 |
13853
|
aaronmk
|
-- Data for Name: tnrs_match; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
| 758 |
5423
|
aaronmk
|
--
|
| 759 |
|
|
|
| 760 |
13853
|
aaronmk
|
COPY tnrs_match (batch, match_num, "Name_number", "Name_submitted", "Overall_score", "Name_matched", "Name_matched_rank", "Name_score", "Name_matched_author", "Name_matched_url", "Author_matched", "Author_score", "Family_matched", "Family_score", "Name_matched_accepted_family", "Genus_matched", "Genus_score", "Specific_epithet_matched", "Specific_epithet_score", "Infraspecific_rank", "Infraspecific_epithet_matched", "Infraspecific_epithet_score", "Infraspecific_rank_2", "Infraspecific_epithet_2_matched", "Infraspecific_epithet_2_score", "Annotations", "Unmatched_terms", "Taxonomic_status", "Accepted_name", "Accepted_name_author", "Accepted_name_rank", "Accepted_name_url", "Accepted_name_species", "Accepted_name_family", "Selected", "Source", "Warnings", "Accepted_name_lsid", is_valid_match, scrubbed_unique_taxon_name) FROM stdin;
|
| 761 |
|
|
2014-06-25 16:26:37.716529-07 0 0 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 \N http://www.theplantlist.org/1.1/browse/A/Compositae/ \N \N Compositae 1 \N \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Accepted Compositae \N family http://www.theplantlist.org/1.1/browse/A/Compositae/ \N \N true tpl [Ambiguous match] \N t Compositae
|
| 762 |
|
|
2014-06-25 16:26:37.716529-07 1 0 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 \N \N \N \N Compositae 1 \N \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Accepted Compositae \N family \N \N \N false tpl [Ambiguous match] \N t Compositae
|
| 763 |
|
|
2014-06-25 16:26:37.716529-07 2 0 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 Giseke http://www.tropicos.org/Name/50255940 \N \N Compositae 1 Compositae \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Synonym Asteraceae Bercht. & J. Presl family http://www.tropicos.org/Name/50307371 \N Asteraceae false tropicos \N t Asteraceae Bercht. & J. Presl
|
| 764 |
|
|
2014-06-25 16:26:37.716529-07 3 1 Fabaceae Boyle#6500 0.839999999999999969 Fagaceae family 0.939999999999999947 \N ;http://plants.usda.gov/java/nameSearch \N \N Fagaceae 0.880000000000000004 \N \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fagaceae \N family ;http://plants.usda.gov/java/nameSearch \N \N true tpl;usda \N f Fagaceae
|
| 765 |
|
|
2014-06-25 16:26:37.716529-07 4 1 Fabaceae Boyle#6500 0.900000000000000022 Fabaceae family 1 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae true tropicos \N t Fabaceae Lindl.
|
| 766 |
|
|
2014-06-25 16:26:37.716529-07 5 1 Fabaceae Boyle#6500 0.839999999999999969 Fagaceae family 0.939999999999999947 Dumort. http://www.tropicos.org/Name/42000062 \N \N Fagaceae 0.880000000000000004 Fagaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fagaceae Dumort. family http://www.tropicos.org/Name/42000062 \N Fagaceae false tropicos \N f Fagaceae Dumort.
|
| 767 |
|
|
2014-06-25 16:26:37.716529-07 6 1 Fabaceae Boyle#6500 0.67000000000000004 Ficaceae family 0.770000000000000018 Bercht. & J. Presl http://www.tropicos.org/Name/100353631 \N \N Ficaceae 0.75 Ficaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 No opinion \N \N \N \N \N \N false tropicos \N f Ficaceae Bercht. & J. Presl
|
| 768 |
|
|
2014-06-25 16:26:37.716529-07 7 1 Fabaceae Boyle#6500 0.67000000000000004 Fucaceae family 0.770000000000000018 \N http://www.tropicos.org/Name/100371040 \N \N Fucaceae 0.75 Fucaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 No opinion \N \N \N \N \N \N false tropicos \N f Fucaceae
|
| 769 |
|
|
2014-06-25 16:26:37.716529-07 8 1 Fabaceae Boyle#6500 0.900000000000000022 Fabaceae family 1 \N http://plants.usda.gov/java/nameSearch \N \N Fabaceae 1 \N \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fabaceae \N family http://plants.usda.gov/java/nameSearch \N \N false usda \N t Fabaceae
|
| 770 |
|
|
2014-06-25 16:26:37.716529-07 9 2 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 \N http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Accepted Inga \N genus http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N Fabaceae true tpl;usda \N t Fabaceae Inga
|
| 771 |
|
|
2014-06-25 16:26:37.716529-07 10 2 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae false tropicos \N t Fabaceae Inga Mill.
|
| 772 |
|
|
2014-06-25 16:26:37.716529-07 11 2 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 Scop. http://www.tropicos.org/Name/50215121 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Illegitimate \N \N \N \N \N \N false tropicos \N t Fabaceae Inga Scop.
|
| 773 |
|
|
2014-06-25 16:26:37.716529-07 12 3 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 \N http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Accepted Inga \N genus http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N Fabaceae true tpl;usda \N t Fabaceae Inga
|
| 774 |
|
|
2014-06-25 16:26:37.716529-07 13 3 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae false tropicos \N t Fabaceae Inga Mill.
|
| 775 |
|
|
2014-06-25 16:26:37.716529-07 14 3 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 Scop. http://www.tropicos.org/Name/50215121 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Illegitimate \N \N \N \N \N \N false tropicos \N t Fabaceae Inga Scop.
|
| 776 |
|
|
2014-06-25 16:26:37.716529-07 15 4 Fabaceae unknown #2 0.839999999999999969 Fagaceae family 0.939999999999999947 \N ;http://plants.usda.gov/java/nameSearch \N \N Fagaceae 0.880000000000000004 \N \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fagaceae \N family ;http://plants.usda.gov/java/nameSearch \N \N true tpl;usda \N f Fagaceae
|
| 777 |
|
|
2014-06-25 16:26:37.716529-07 16 4 Fabaceae unknown #2 0.900000000000000022 Fabaceae family 1 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae true tropicos \N t Fabaceae Lindl.
|
| 778 |
|
|
2014-06-25 16:26:37.716529-07 17 4 Fabaceae unknown #2 0.839999999999999969 Fagaceae family 0.939999999999999947 Dumort. http://www.tropicos.org/Name/42000062 \N \N Fagaceae 0.880000000000000004 Fagaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fagaceae Dumort. family http://www.tropicos.org/Name/42000062 \N Fagaceae false tropicos \N f Fagaceae Dumort.
|
| 779 |
|
|
2014-06-25 16:26:37.716529-07 18 4 Fabaceae unknown #2 0.67000000000000004 Ficaceae family 0.770000000000000018 Bercht. & J. Presl http://www.tropicos.org/Name/100353631 \N \N Ficaceae 0.75 Ficaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 No opinion \N \N \N \N \N \N false tropicos \N f Ficaceae Bercht. & J. Presl
|
| 780 |
|
|
2014-06-25 16:26:37.716529-07 19 4 Fabaceae unknown #2 0.67000000000000004 Fucaceae family 0.770000000000000018 \N http://www.tropicos.org/Name/100371040 \N \N Fucaceae 0.75 Fucaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 No opinion \N \N \N \N \N \N false tropicos \N f Fucaceae
|
| 781 |
|
|
2014-06-25 16:26:37.716529-07 20 4 Fabaceae unknown #2 0.900000000000000022 Fabaceae family 1 \N http://plants.usda.gov/java/nameSearch \N \N Fabaceae 1 \N \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fabaceae \N family http://plants.usda.gov/java/nameSearch \N \N false usda \N t Fabaceae
|
| 782 |
|
|
2014-06-25 16:26:37.716529-07 21 5 Fam_indet. Boyle#6501 0 No suitable matches found. \N 0 \N \N \N 0 \N 0 \N \N 0 \N 0 \N \N 0 \N \N 0 \N \N \N \N \N \N \N \N \N true \N \N f \N
|
| 783 |
|
|
2014-06-25 16:26:37.716529-07 22 6 Poa annua 1 Poa annua species 1 L. http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN \N \N \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN Poa annua Poaceae true tpl;tropicos;usda \N t Poaceae Poa annua L.
|
| 784 |
|
|
2014-06-25 16:26:37.716529-07 23 6 Poa annua 1 Poa annua species 1 Cham. & Schltdl. http://www.theplantlist.org/tpl1.1/record/kew-435195 \N \N \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Synonym Poa infirma Kunth species http://www.theplantlist.org/tpl1.1/record/kew-436189 Poa infirma Poaceae false tpl \N t Poaceae Poa infirma Kunth
|
| 785 |
|
|
2014-06-25 16:26:37.716529-07 24 7 Poa annua L. 1 Poa annua species 1 L. http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN L. 1 \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN Poa annua Poaceae true tpl;tropicos;usda \N t Poaceae Poa annua L.
|
| 786 |
|
|
2014-06-25 16:26:37.716529-07 25 7 Poa annua L. 0.800000000000000044 Poa annua species 1 Cham. & Schltdl. http://www.theplantlist.org/tpl1.1/record/kew-435195 Cham. & Schltdl. 0 \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Synonym Poa infirma Kunth species http://www.theplantlist.org/tpl1.1/record/kew-436189 Poa infirma Poaceae false tpl \N t Poaceae Poa infirma Kunth
|
| 787 |
|
|
2014-06-25 16:26:37.716529-07 26 8 Poa annua fo. lanuginosa 1 Poa annua fo. lanuginosa fo. 1 Sennen http://www.theplantlist.org/tpl1.1/record/tro-50267771 \N \N \N \N \N Poa 1 annua 1 fo. lanuginosa 1 \N \N \N \N \N Synonym Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194 Poa annua Poaceae true tpl \N t Poaceae Poa annua L.
|
| 788 |
|
|
2014-06-25 16:26:37.716529-07 27 8 Poa annua fo. lanuginosa 1 Poa annua fo. lanuginosa forma 1 Sennen http://www.tropicos.org/Name/50267771 \N \N \N \N Poaceae Poa 1 annua 1 fo. lanuginosa 1 \N \N \N \N \N Synonym Poa annua var. annua \N variety http://www.tropicos.org/Name/25517736 Poa annua Poaceae false tropicos \N t Poaceae Poa annua var. annua
|
| 789 |
|
|
2014-06-25 16:26:37.716529-07 28 9 Poa annua ssp. exilis 1 Poa annua subsp. exilis subspecies 1 (Tomm. ex Freyn) Asch. & Graebn. http://www.tropicos.org/Name/50063800 \N \N \N \N Poaceae Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae true tropicos \N t Poaceae Poa infirma Kunth
|
| 790 |
|
|
2014-06-25 16:26:37.716529-07 29 9 Poa annua ssp. exilis 0.959999999999999964 Poa annua var. exilis variety 0.959999999999999964 Tomm. ex Freyn http://www.tropicos.org/Name/25547854 \N \N \N \N Poaceae Poa 1 annua 1 var. exilis 0.699999999999999956 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae false tropicos \N t Poaceae Poa infirma Kunth
|
| 791 |
|
|
2014-06-25 16:26:37.716529-07 30 10 Poa annua subsp. exilis 1 Poa annua subsp. exilis subsp. 1 (Tomm. ex Freyn.) Asch. & Graebn. http://www.theplantlist.org/tpl1.1/record/kew-435202 \N \N \N \N \N Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.theplantlist.org/tpl1.1/record/kew-436189 Poa infirma Poaceae true tpl \N t Poaceae Poa infirma Kunth
|
| 792 |
|
|
2014-06-25 16:26:37.716529-07 31 10 Poa annua subsp. exilis 1 Poa annua subsp. exilis subspecies 1 (Tomm. ex Freyn) Asch. & Graebn. http://www.tropicos.org/Name/50063800 \N \N \N \N Poaceae Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae false tropicos \N t Poaceae Poa infirma Kunth
|
| 793 |
|
|
2014-06-25 16:26:37.716529-07 32 11 Poa annua subvar. minima 1 Poa annua subvar. minima subvariety 1 (Schur) Asch. & Graebn. http://www.tropicos.org/Name/50158097 \N \N \N \N Poaceae Poa 1 annua 1 subvar. minima 1 \N \N \N \N \N Accepted Poa annua subvar. minima (Schur) Asch. & Graebn. subvariety http://www.tropicos.org/Name/50158097 Poa annua Poaceae true tropicos \N t Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn.
|
| 794 |
|
|
2014-06-25 16:26:37.716529-07 33 12 Poa annua var. eriolepis 1 Poa annua var. eriolepis var. 1 ̉ۡ.Desv. http://www.theplantlist.org/tpl1.1/record/kew-435206 \N \N \N \N \N Poa 1 annua 1 var. eriolepis 1 \N \N \N \N \N Synonym Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194 Poa annua Poaceae true tpl \N t Poaceae Poa annua L.
|
| 795 |
|
|
2014-06-25 16:26:37.716529-07 34 12 Poa annua var. eriolepis 1 Poa annua var. eriolepis variety 1 E. Desv. http://www.tropicos.org/Name/50119145 \N \N \N \N Poaceae Poa 1 annua 1 var. eriolepis 1 \N \N \N \N \N Synonym Poa annua L. species http://www.tropicos.org/Name/25509881 Poa annua Poaceae false tropicos \N t Poaceae Poa annua L.
|
| 796 |
|
|
2014-06-25 16:26:37.716529-07 35 13 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subsp. 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.theplantlist.org/tpl1.1/record/tro-6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subsp. http://www.theplantlist.org/tpl1.1/record/tro-6303627 Silene scouleri Caryophyllaceae true tpl [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
| 797 |
|
|
2014-06-25 16:26:37.716529-07 36 13 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae false tropicos [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
| 798 |
|
|
2014-06-25 16:26:37.716529-07 37 13 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://plants.usda.gov/java/profile?symbol=SISCP \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://plants.usda.gov/java/profile?symbol=SISCP Silene scouleri Caryophyllaceae false usda [Partial match] \N t Caryophyllaceae Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
| 799 |
|
|
2014-06-25 16:26:37.716529-07 38 14 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subsp. 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.theplantlist.org/tpl1.1/record/tro-6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subsp. http://www.theplantlist.org/tpl1.1/record/tro-6303627 Silene scouleri Caryophyllaceae true tpl [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
| 800 |
|
|
2014-06-25 16:26:37.716529-07 39 14 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae false tropicos [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
| 801 |
|
|
2014-06-25 16:26:37.716529-07 40 14 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://plants.usda.gov/java/profile?symbol=SISCP \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://plants.usda.gov/java/profile?symbol=SISCP Silene scouleri Caryophyllaceae false usda [Partial match] \N t Caryophyllaceae Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
| 802 |
5917
|
aaronmk
|
\.
|
| 803 |
5423
|
aaronmk
|
|
| 804 |
|
|
|
| 805 |
5917
|
aaronmk
|
--
|
| 806 |
10395
|
aaronmk
|
-- Data for Name: ~Source.map; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
| 807 |
|
|
--
|
| 808 |
|
|
|
| 809 |
|
|
COPY "~Source.map" ("from", "to", filter, notes) FROM stdin;
|
| 810 |
|
|
row_num *row_num \N \N
|
| 811 |
|
|
:aggregator sourceType \N \N
|
| 812 |
10786
|
aaronmk
|
:http://tnrs.iplantcollaborative.org/TNRSapp.html datasetURL \N \N
|
| 813 |
10395
|
aaronmk
|
\.
|
| 814 |
|
|
|
| 815 |
|
|
|
| 816 |
|
|
--
|
| 817 |
|
|
-- Name: Source_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 818 |
|
|
--
|
| 819 |
|
|
|
| 820 |
|
|
ALTER TABLE ONLY "Source"
|
| 821 |
|
|
ADD CONSTRAINT "Source_pkey" PRIMARY KEY ("*row_num");
|
| 822 |
|
|
|
| 823 |
|
|
|
| 824 |
|
|
--
|
| 825 |
10786
|
aaronmk
|
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 826 |
|
|
--
|
| 827 |
|
|
|
| 828 |
|
|
ALTER TABLE ONLY batch_download_settings
|
| 829 |
|
|
ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id);
|
| 830 |
|
|
|
| 831 |
|
|
|
| 832 |
|
|
--
|
| 833 |
|
|
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 834 |
|
|
--
|
| 835 |
|
|
|
| 836 |
|
|
ALTER TABLE ONLY batch
|
| 837 |
|
|
ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time);
|
| 838 |
|
|
|
| 839 |
|
|
|
| 840 |
|
|
--
|
| 841 |
|
|
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 842 |
|
|
--
|
| 843 |
|
|
|
| 844 |
|
|
ALTER TABLE ONLY batch
|
| 845 |
|
|
ADD CONSTRAINT batch_pkey PRIMARY KEY (id);
|
| 846 |
|
|
|
| 847 |
|
|
|
| 848 |
|
|
--
|
| 849 |
|
|
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 850 |
|
|
--
|
| 851 |
|
|
|
| 852 |
|
|
ALTER TABLE ONLY client_version
|
| 853 |
|
|
ADD CONSTRAINT client_version_pkey PRIMARY KEY (id);
|
| 854 |
|
|
|
| 855 |
|
|
|
| 856 |
|
|
--
|
| 857 |
9493
|
aaronmk
|
-- Name: tnrs_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 858 |
5917
|
aaronmk
|
--
|
| 859 |
5423
|
aaronmk
|
|
| 860 |
13853
|
aaronmk
|
ALTER TABLE ONLY tnrs_match
|
| 861 |
13590
|
aaronmk
|
ADD CONSTRAINT tnrs_pkey PRIMARY KEY (batch, match_num);
|
| 862 |
5917
|
aaronmk
|
|
| 863 |
|
|
|
| 864 |
5423
|
aaronmk
|
--
|
| 865 |
10395
|
aaronmk
|
-- Name: ~Source.map_from_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 866 |
|
|
--
|
| 867 |
|
|
|
| 868 |
|
|
ALTER TABLE ONLY "~Source.map"
|
| 869 |
|
|
ADD CONSTRAINT "~Source.map_from_key" UNIQUE ("from");
|
| 870 |
|
|
|
| 871 |
|
|
|
| 872 |
|
|
--
|
| 873 |
|
|
-- Name: ~Source.map_to_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
| 874 |
|
|
--
|
| 875 |
|
|
|
| 876 |
|
|
ALTER TABLE ONLY "~Source.map"
|
| 877 |
|
|
ADD CONSTRAINT "~Source.map_to_key" UNIQUE ("to");
|
| 878 |
|
|
|
| 879 |
|
|
|
| 880 |
|
|
--
|
| 881 |
13574
|
aaronmk
|
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
| 882 |
5917
|
aaronmk
|
--
|
| 883 |
|
|
|
| 884 |
13574
|
aaronmk
|
CREATE INDEX batch_client_version_idx ON batch USING btree (client_version);
|
| 885 |
5917
|
aaronmk
|
|
| 886 |
|
|
|
| 887 |
|
|
--
|
| 888 |
13590
|
aaronmk
|
-- Name: tnrs_Name_submitted_idx; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
| 889 |
|
|
--
|
| 890 |
|
|
|
| 891 |
13853
|
aaronmk
|
CREATE INDEX "tnrs_Name_submitted_idx" ON tnrs_match USING btree ("Name_submitted");
|
| 892 |
13590
|
aaronmk
|
|
| 893 |
|
|
|
| 894 |
|
|
--
|
| 895 |
13574
|
aaronmk
|
-- Name: tnrs__valid_match; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
| 896 |
|
|
--
|
| 897 |
|
|
|
| 898 |
13853
|
aaronmk
|
CREATE INDEX tnrs__valid_match ON tnrs_match USING btree ("Name_submitted") WHERE is_valid_match;
|
| 899 |
13574
|
aaronmk
|
|
| 900 |
|
|
|
| 901 |
|
|
--
|
| 902 |
10786
|
aaronmk
|
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: bien
|
| 903 |
|
|
--
|
| 904 |
|
|
|
| 905 |
|
|
CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill();
|
| 906 |
|
|
|
| 907 |
|
|
|
| 908 |
|
|
--
|
| 909 |
10395
|
aaronmk
|
-- Name: map_filter_insert; Type: TRIGGER; Schema: TNRS; Owner: bien
|
| 910 |
|
|
--
|
| 911 |
|
|
|
| 912 |
|
|
CREATE TRIGGER map_filter_insert BEFORE INSERT ON "~Source.map" FOR EACH ROW EXECUTE PROCEDURE util.map_filter_insert();
|
| 913 |
|
|
|
| 914 |
|
|
ALTER TABLE "~Source.map" DISABLE TRIGGER map_filter_insert;
|
| 915 |
|
|
|
| 916 |
|
|
|
| 917 |
|
|
--
|
| 918 |
13574
|
aaronmk
|
-- Name: tnrs__batch_begin; Type: TRIGGER; Schema: TNRS; Owner: bien
|
| 919 |
|
|
--
|
| 920 |
|
|
|
| 921 |
13853
|
aaronmk
|
CREATE TRIGGER tnrs__batch_begin BEFORE INSERT ON tnrs_match FOR EACH STATEMENT EXECUTE PROCEDURE tnrs__batch_begin();
|
| 922 |
13574
|
aaronmk
|
|
| 923 |
|
|
|
| 924 |
|
|
--
|
| 925 |
13579
|
aaronmk
|
-- Name: tnrs__match_num__fill; Type: TRIGGER; Schema: TNRS; Owner: bien
|
| 926 |
|
|
--
|
| 927 |
|
|
|
| 928 |
13853
|
aaronmk
|
CREATE TRIGGER tnrs__match_num__fill BEFORE INSERT ON tnrs_match FOR EACH ROW EXECUTE PROCEDURE tnrs__match_num__fill();
|
| 929 |
13579
|
aaronmk
|
|
| 930 |
|
|
|
| 931 |
|
|
--
|
| 932 |
9529
|
aaronmk
|
-- Name: tnrs_populate_fields; Type: TRIGGER; Schema: TNRS; Owner: bien
|
| 933 |
5917
|
aaronmk
|
--
|
| 934 |
|
|
|
| 935 |
13853
|
aaronmk
|
CREATE TRIGGER tnrs_populate_fields BEFORE INSERT OR UPDATE ON tnrs_match FOR EACH ROW EXECUTE PROCEDURE tnrs_populate_fields();
|
| 936 |
5917
|
aaronmk
|
|
| 937 |
|
|
|
| 938 |
|
|
--
|
| 939 |
10786
|
aaronmk
|
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien
|
| 940 |
|
|
--
|
| 941 |
|
|
|
| 942 |
|
|
ALTER TABLE ONLY batch
|
| 943 |
|
|
ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
| 944 |
|
|
|
| 945 |
|
|
|
| 946 |
|
|
--
|
| 947 |
|
|
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien
|
| 948 |
|
|
--
|
| 949 |
|
|
|
| 950 |
|
|
ALTER TABLE ONLY batch_download_settings
|
| 951 |
|
|
ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
| 952 |
|
|
|
| 953 |
|
|
|
| 954 |
|
|
--
|
| 955 |
|
|
-- Name: tnrs_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien
|
| 956 |
|
|
--
|
| 957 |
|
|
|
| 958 |
13853
|
aaronmk
|
ALTER TABLE ONLY tnrs_match
|
| 959 |
10786
|
aaronmk
|
ADD CONSTRAINT tnrs_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
| 960 |
|
|
|
| 961 |
|
|
|
| 962 |
|
|
--
|
| 963 |
10395
|
aaronmk
|
-- Name: TNRS; Type: ACL; Schema: -; Owner: bien
|
| 964 |
|
|
--
|
| 965 |
|
|
|
| 966 |
|
|
REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC;
|
| 967 |
|
|
REVOKE ALL ON SCHEMA "TNRS" FROM bien;
|
| 968 |
|
|
GRANT ALL ON SCHEMA "TNRS" TO bien;
|
| 969 |
|
|
GRANT USAGE ON SCHEMA "TNRS" TO bien_read;
|
| 970 |
|
|
|
| 971 |
|
|
|
| 972 |
|
|
--
|
| 973 |
13853
|
aaronmk
|
-- Name: tnrs_match; Type: ACL; Schema: TNRS; Owner: bien
|
| 974 |
10395
|
aaronmk
|
--
|
| 975 |
|
|
|
| 976 |
13853
|
aaronmk
|
REVOKE ALL ON TABLE tnrs_match FROM PUBLIC;
|
| 977 |
|
|
REVOKE ALL ON TABLE tnrs_match FROM bien;
|
| 978 |
|
|
GRANT ALL ON TABLE tnrs_match TO bien;
|
| 979 |
|
|
GRANT SELECT ON TABLE tnrs_match TO bien_read;
|
| 980 |
10395
|
aaronmk
|
|
| 981 |
|
|
|
| 982 |
|
|
--
|
| 983 |
13574
|
aaronmk
|
-- Name: MatchedTaxon; Type: ACL; Schema: TNRS; Owner: bien
|
| 984 |
|
|
--
|
| 985 |
|
|
|
| 986 |
|
|
REVOKE ALL ON TABLE "MatchedTaxon" FROM PUBLIC;
|
| 987 |
|
|
REVOKE ALL ON TABLE "MatchedTaxon" FROM bien;
|
| 988 |
|
|
GRANT ALL ON TABLE "MatchedTaxon" TO bien;
|
| 989 |
|
|
GRANT SELECT ON TABLE "MatchedTaxon" TO bien_read;
|
| 990 |
|
|
|
| 991 |
|
|
|
| 992 |
|
|
--
|
| 993 |
|
|
-- Name: ValidMatchedTaxon; Type: ACL; Schema: TNRS; Owner: bien
|
| 994 |
|
|
--
|
| 995 |
|
|
|
| 996 |
|
|
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM PUBLIC;
|
| 997 |
|
|
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM bien;
|
| 998 |
|
|
GRANT ALL ON TABLE "ValidMatchedTaxon" TO bien;
|
| 999 |
|
|
GRANT SELECT ON TABLE "ValidMatchedTaxon" TO bien_read;
|
| 1000 |
|
|
|
| 1001 |
|
|
|
| 1002 |
|
|
--
|
| 1003 |
|
|
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: ACL; Schema: TNRS; Owner: bien
|
| 1004 |
|
|
--
|
| 1005 |
|
|
|
| 1006 |
|
|
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM PUBLIC;
|
| 1007 |
|
|
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM bien;
|
| 1008 |
|
|
GRANT ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien;
|
| 1009 |
|
|
GRANT SELECT ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien_read;
|
| 1010 |
|
|
|
| 1011 |
|
|
|
| 1012 |
|
|
--
|
| 1013 |
|
|
-- Name: taxon_scrub; Type: ACL; Schema: TNRS; Owner: bien
|
| 1014 |
|
|
--
|
| 1015 |
|
|
|
| 1016 |
|
|
REVOKE ALL ON TABLE taxon_scrub FROM PUBLIC;
|
| 1017 |
|
|
REVOKE ALL ON TABLE taxon_scrub FROM bien;
|
| 1018 |
|
|
GRANT ALL ON TABLE taxon_scrub TO bien;
|
| 1019 |
|
|
GRANT SELECT ON TABLE taxon_scrub TO bien_read;
|
| 1020 |
|
|
|
| 1021 |
|
|
|
| 1022 |
|
|
--
|
| 1023 |
5423
|
aaronmk
|
-- PostgreSQL database dump complete
|
| 1024 |
|
|
--
|
