Revision 13972
Added by Aaron Marcuse-Kubitza over 10 years ago
| trunk/inputs/IUCN/Makefile | ||
|---|---|---|
| 1 |
include ../input.Makefile |
|
| trunk/inputs/IUCN/Source/test.xml.ref | ||
|---|---|---|
| 1 |
<!--put template--> |
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| 2 |
<VegBIEN> |
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| 3 |
<_setDefault id="-1"> |
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| 4 |
<source_id><source><shortname>IUCN.new</shortname></source></source_id> |
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| 5 |
<path> |
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| 6 |
<_simplifyPath> |
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| 7 |
<next>parent_id</next> |
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| 8 |
<path> |
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| 9 |
<source> |
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| 10 |
<shortname>IUCN.new</shortname> |
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| 11 |
<sourcetype>primary database</sourcetype> |
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| 12 |
</source> |
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| 13 |
</path> |
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| 14 |
</_simplifyPath> |
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| 15 |
</path> |
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| 16 |
</_setDefault> |
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| 17 |
</VegBIEN> |
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| 18 |
Inserted 1 new rows into database |
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| trunk/inputs/IUCN/Source/VegBIEN.csv | ||
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| 1 |
link ../../../mappings/VegCore-VegBIEN.csv |
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| 2 | 0 | |
| trunk/inputs/IUCN/Source/unmapped_terms.csv | ||
|---|---|---|
| 1 |
*row_num |
|
| trunk/inputs/IUCN/Source/header.csv | ||
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| 1 |
row_num |
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| trunk/inputs/IUCN/Source/data.csv | ||
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| 1 |
|
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| 2 |
|
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| trunk/inputs/IUCN/Source/run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
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| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../table.run
|
|
| 3 | 0 | |
| trunk/inputs/IUCN/Source/map.csv | ||
|---|---|---|
| 1 |
IUCN,VegCore,Filter,Comments |
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| 2 |
row_num,*row_num,, |
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| 3 |
:primary database,sourceType,, |
|
| trunk/inputs/IUCN/import_order.txt | ||
|---|---|---|
| 1 |
European_Red_List_Plants |
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| 2 |
Source |
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| trunk/inputs/IUCN/run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
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| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../../lib/runscripts/datasrc_dir.run
|
|
| 3 | 0 | |
| trunk/inputs/IUCN/European_Red_List_Plants/header.csv | ||
|---|---|---|
| 1 |
family,specificEpithet,*IUCN Red List Category (Europe),*IUCN Red List Criteria (Europe),*IUCN Red List Category (EU 27),*IUCN Red List Criteria (EU 27),*Endemic to Europe?,*Endemic to EU27?,*Habitats Directive Annexes,*Bern Convention Annexes,*CITES Annexes,*EU Wildlife Trade Regulation,*Aquatic species?,*Crop wild relative?,Crop wild relative? |
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| trunk/inputs/IUCN/European_Red_List_Plants/run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
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| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../table.run
|
|
| 3 | 0 | |
| trunk/inputs/IUCN/European_Red_List_Plants/map.csv | ||
|---|---|---|
| 1 |
IUCN,VegCore,Filter,Comments |
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| 2 |
row_num,*row_num,, |
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| 3 |
Family,family,, |
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| 4 |
Species,specificEpithet,, |
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| 5 |
IUCN Red List Category (Europe),*IUCN Red List Category (Europe),, |
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| 6 |
IUCN Red List Criteria (Europe),*IUCN Red List Criteria (Europe),, |
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| 7 |
IUCN Red List Category (EU 27),*IUCN Red List Category (EU 27),, |
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| 8 |
IUCN Red List Criteria (EU 27),*IUCN Red List Criteria (EU 27),, |
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| 9 |
Endemic to Europe?,*Endemic to Europe?,, |
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| 10 |
Endemic to EU27?,*Endemic to EU27?,, |
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| 11 |
Habitats Directive Annexes,*Habitats Directive Annexes,, |
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| 12 |
Bern Convention Annexes,*Bern Convention Annexes,, |
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| 13 |
CITES Annexes,*CITES Annexes,, |
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| 14 |
EU Wildlife Trade Regulation,*EU Wildlife Trade Regulation,, |
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| 15 |
Aquatic species?,*Aquatic species?,, |
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| 16 |
Crop wild relative?,*Crop wild relative?,, |
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| trunk/inputs/IUCN/European_Red_List_Plants/test.xml.ref | ||
|---|---|---|
| 1 |
<!--put template--> |
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| 2 |
<VegBIEN> |
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| 3 |
<_setDefault id="-1"> |
|
| 4 |
<source_id><source><shortname>IUCN.new</shortname></source></source_id> |
|
| 5 |
<path> |
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| 6 |
<_simplifyPath> |
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| 7 |
<next>parent_id</next> |
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| 8 |
<path> |
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| 9 |
<location> |
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| 10 |
<locationevent> |
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| 11 |
<locationevent fkey="parent_id"> |
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| 12 |
<taxonoccurrence> |
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| 13 |
<taxondetermination> |
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| 14 |
<taxonverbatim_id> |
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| 15 |
<taxonverbatim> |
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| 16 |
<taxonlabel_id> |
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| 17 |
<taxonlabel> |
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| 18 |
<parent_id> |
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| 19 |
<taxonlabel> |
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| 20 |
<parent_id> |
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| 21 |
<taxonlabel> |
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| 22 |
<rank>cultivar</rank> |
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| 23 |
<parent_id> |
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| 24 |
<taxonlabel> |
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| 25 |
<rank>forma</rank> |
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| 26 |
<parent_id> |
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| 27 |
<taxonlabel> |
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| 28 |
<rank>variety</rank> |
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| 29 |
<parent_id> |
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| 30 |
<taxonlabel> |
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| 31 |
<rank>subspecies</rank> |
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| 32 |
<parent_id> |
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| 33 |
<taxonlabel> |
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| 34 |
<rank>species</rank> |
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| 35 |
<taxonepithet>$specificEpithet</taxonepithet> |
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| 36 |
<parent_id> |
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| 37 |
<taxonlabel> |
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| 38 |
<rank>genus</rank> |
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| 39 |
<parent_id> |
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| 40 |
<taxonlabel> |
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| 41 |
<rank>family</rank> |
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| 42 |
<taxonepithet>$family</taxonepithet> |
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| 43 |
</taxonlabel> |
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| 44 |
</parent_id> |
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| 45 |
</taxonlabel> |
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| 46 |
</parent_id> |
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| 47 |
</taxonlabel> |
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| 48 |
</parent_id> |
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| 49 |
</taxonlabel> |
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| 50 |
</parent_id> |
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| 51 |
</taxonlabel> |
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| 52 |
</parent_id> |
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| 53 |
</taxonlabel> |
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| 54 |
</parent_id> |
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| 55 |
</taxonlabel> |
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| 56 |
</parent_id> |
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| 57 |
</taxonlabel> |
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| 58 |
</parent_id> |
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| 59 |
<taxonomicname> |
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| 60 |
<_merge_prefix> |
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<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
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| 62 |
<value>$specificEpithet</value> |
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| 63 |
</_merge_prefix> |
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| 64 |
</taxonomicname> |
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| 65 |
</taxonlabel> |
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| 66 |
</taxonlabel_id> |
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<family>$family</family> |
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<specific_epithet>$specificEpithet</specific_epithet> |
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| 69 |
</taxonverbatim> |
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| 70 |
</taxonverbatim_id> |
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| 71 |
</taxondetermination> |
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| 72 |
</taxonoccurrence> |
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| 73 |
</locationevent> |
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| 74 |
</locationevent> |
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| 75 |
</location> |
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| 76 |
</path> |
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| 77 |
</_simplifyPath> |
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| 78 |
</path> |
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| 79 |
</_setDefault> |
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| 80 |
</VegBIEN> |
|
| 81 |
Inserted 9 new rows into database |
|
| trunk/inputs/IUCN/European_Red_List_Plants/VegBIEN.csv | ||
|---|---|---|
| 1 |
link ../../../mappings/VegCore-VegBIEN.csv |
|
| 2 | 0 | |
| trunk/inputs/IUCN/European_Red_List_Plants/unmapped_terms.csv | ||
|---|---|---|
| 1 |
*row_num |
|
| 2 |
*IUCN Red List Category (Europe) |
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| 3 |
*IUCN Red List Criteria (Europe) |
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| 4 |
*IUCN Red List Category (EU 27) |
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| 5 |
*IUCN Red List Criteria (EU 27) |
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| 6 |
*Endemic to Europe? |
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| 7 |
*Endemic to EU27? |
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| 8 |
*Habitats Directive Annexes |
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| 9 |
*Bern Convention Annexes |
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| 10 |
*CITES Annexes |
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| 11 |
*EU Wildlife Trade Regulation |
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| 12 |
*Aquatic species? |
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| 13 |
*Crop wild relative? |
|
| trunk/inputs/IUCN/_src/European_Red_List_Plants_Appendix_2.xlsx.url | ||
|---|---|---|
| 1 |
http://www.iucnredlist.org/documents/Europe/European_Red_List_Plants_Appendix_2.xlsx |
|
| 2 |
http://www.iucnredlist.org/initiatives/europe/publications |
|
| trunk/inputs/IUCN/table.run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
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| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../../lib/runscripts/table.run
|
|
| 3 | 0 | |
| trunk/inputs/.IUCN/Source/test.xml.ref | ||
|---|---|---|
| 1 |
<!--put template--> |
|
| 2 |
<VegBIEN> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<source_id><source><shortname>IUCN.new</shortname></source></source_id> |
|
| 5 |
<path> |
|
| 6 |
<_simplifyPath> |
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| 7 |
<next>parent_id</next> |
|
| 8 |
<path> |
|
| 9 |
<source> |
|
| 10 |
<shortname>IUCN.new</shortname> |
|
| 11 |
<sourcetype>primary database</sourcetype> |
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| 12 |
</source> |
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| 13 |
</path> |
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| 14 |
</_simplifyPath> |
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| 15 |
</path> |
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| 16 |
</_setDefault> |
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| 17 |
</VegBIEN> |
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| 18 |
Inserted 1 new rows into database |
|
| trunk/inputs/.IUCN/Source/VegBIEN.csv | ||
|---|---|---|
| 1 |
link ../../../mappings/VegCore-VegBIEN.csv |
|
| 0 | 2 | |
| trunk/inputs/.IUCN/Source/map.csv | ||
|---|---|---|
| 1 |
IUCN,VegCore,Filter,Comments |
|
| 2 |
row_num,*row_num,, |
|
| 3 |
:primary database,sourceType,, |
|
| trunk/inputs/.IUCN/Source/unmapped_terms.csv | ||
|---|---|---|
| 1 |
*row_num |
|
| trunk/inputs/.IUCN/Source/run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
|
| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../table.run
|
|
| 0 | 3 | |
| trunk/inputs/.IUCN/Source/header.csv | ||
|---|---|---|
| 1 |
row_num |
|
| trunk/inputs/.IUCN/Source/data.csv | ||
|---|---|---|
| 1 |
|
|
| 2 |
|
|
| trunk/inputs/.IUCN/European_Red_List_Plants/test.xml.ref | ||
|---|---|---|
| 1 |
<!--put template--> |
|
| 2 |
<VegBIEN> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<source_id><source><shortname>IUCN.new</shortname></source></source_id> |
|
| 5 |
<path> |
|
| 6 |
<_simplifyPath> |
|
| 7 |
<next>parent_id</next> |
|
| 8 |
<path> |
|
| 9 |
<location> |
|
| 10 |
<locationevent> |
|
| 11 |
<locationevent fkey="parent_id"> |
|
| 12 |
<taxonoccurrence> |
|
| 13 |
<taxondetermination> |
|
| 14 |
<taxonverbatim_id> |
|
| 15 |
<taxonverbatim> |
|
| 16 |
<taxonlabel_id> |
|
| 17 |
<taxonlabel> |
|
| 18 |
<parent_id> |
|
| 19 |
<taxonlabel> |
|
| 20 |
<parent_id> |
|
| 21 |
<taxonlabel> |
|
| 22 |
<rank>cultivar</rank> |
|
| 23 |
<parent_id> |
|
| 24 |
<taxonlabel> |
|
| 25 |
<rank>forma</rank> |
|
| 26 |
<parent_id> |
|
| 27 |
<taxonlabel> |
|
| 28 |
<rank>variety</rank> |
|
| 29 |
<parent_id> |
|
| 30 |
<taxonlabel> |
|
| 31 |
<rank>subspecies</rank> |
|
| 32 |
<parent_id> |
|
| 33 |
<taxonlabel> |
|
| 34 |
<rank>species</rank> |
|
| 35 |
<taxonepithet>$specificEpithet</taxonepithet> |
|
| 36 |
<parent_id> |
|
| 37 |
<taxonlabel> |
|
| 38 |
<rank>genus</rank> |
|
| 39 |
<parent_id> |
|
| 40 |
<taxonlabel> |
|
| 41 |
<rank>family</rank> |
|
| 42 |
<taxonepithet>$family</taxonepithet> |
|
| 43 |
</taxonlabel> |
|
| 44 |
</parent_id> |
|
| 45 |
</taxonlabel> |
|
| 46 |
</parent_id> |
|
| 47 |
</taxonlabel> |
|
| 48 |
</parent_id> |
|
| 49 |
</taxonlabel> |
|
| 50 |
</parent_id> |
|
| 51 |
</taxonlabel> |
|
| 52 |
</parent_id> |
|
| 53 |
</taxonlabel> |
|
| 54 |
</parent_id> |
|
| 55 |
</taxonlabel> |
|
| 56 |
</parent_id> |
|
| 57 |
</taxonlabel> |
|
| 58 |
</parent_id> |
|
| 59 |
<taxonomicname> |
|
| 60 |
<_merge_prefix> |
|
| 61 |
<prefix><_taxon_family_require_std><family>$family</family></_taxon_family_require_std></prefix> |
|
| 62 |
<value>$specificEpithet</value> |
|
| 63 |
</_merge_prefix> |
|
| 64 |
</taxonomicname> |
|
| 65 |
</taxonlabel> |
|
| 66 |
</taxonlabel_id> |
|
| 67 |
<family>$family</family> |
|
| 68 |
<specific_epithet>$specificEpithet</specific_epithet> |
|
| 69 |
</taxonverbatim> |
|
| 70 |
</taxonverbatim_id> |
|
| 71 |
</taxondetermination> |
|
| 72 |
</taxonoccurrence> |
|
| 73 |
</locationevent> |
|
| 74 |
</locationevent> |
|
| 75 |
</location> |
|
| 76 |
</path> |
|
| 77 |
</_simplifyPath> |
|
| 78 |
</path> |
|
| 79 |
</_setDefault> |
|
| 80 |
</VegBIEN> |
|
| 81 |
Inserted 9 new rows into database |
|
| trunk/inputs/.IUCN/European_Red_List_Plants/run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
|
| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../table.run
|
|
| 0 | 3 | |
| trunk/inputs/.IUCN/European_Red_List_Plants/VegBIEN.csv | ||
|---|---|---|
| 1 |
link ../../../mappings/VegCore-VegBIEN.csv |
|
| 0 | 2 | |
| trunk/inputs/.IUCN/European_Red_List_Plants/map.csv | ||
|---|---|---|
| 1 |
IUCN,VegCore,Filter,Comments |
|
| 2 |
row_num,*row_num,, |
|
| 3 |
Family,family,, |
|
| 4 |
Species,specificEpithet,, |
|
| 5 |
IUCN Red List Category (Europe),*IUCN Red List Category (Europe),, |
|
| 6 |
IUCN Red List Criteria (Europe),*IUCN Red List Criteria (Europe),, |
|
| 7 |
IUCN Red List Category (EU 27),*IUCN Red List Category (EU 27),, |
|
| 8 |
IUCN Red List Criteria (EU 27),*IUCN Red List Criteria (EU 27),, |
|
| 9 |
Endemic to Europe?,*Endemic to Europe?,, |
|
| 10 |
Endemic to EU27?,*Endemic to EU27?,, |
|
| 11 |
Habitats Directive Annexes,*Habitats Directive Annexes,, |
|
| 12 |
Bern Convention Annexes,*Bern Convention Annexes,, |
|
| 13 |
CITES Annexes,*CITES Annexes,, |
|
| 14 |
EU Wildlife Trade Regulation,*EU Wildlife Trade Regulation,, |
|
| 15 |
Aquatic species?,*Aquatic species?,, |
|
| 16 |
Crop wild relative?,*Crop wild relative?,, |
|
| trunk/inputs/.IUCN/European_Red_List_Plants/unmapped_terms.csv | ||
|---|---|---|
| 1 |
*row_num |
|
| 2 |
*IUCN Red List Category (Europe) |
|
| 3 |
*IUCN Red List Criteria (Europe) |
|
| 4 |
*IUCN Red List Category (EU 27) |
|
| 5 |
*IUCN Red List Criteria (EU 27) |
|
| 6 |
*Endemic to Europe? |
|
| 7 |
*Endemic to EU27? |
|
| 8 |
*Habitats Directive Annexes |
|
| 9 |
*Bern Convention Annexes |
|
| 10 |
*CITES Annexes |
|
| 11 |
*EU Wildlife Trade Regulation |
|
| 12 |
*Aquatic species? |
|
| 13 |
*Crop wild relative? |
|
| trunk/inputs/.IUCN/European_Red_List_Plants/header.csv | ||
|---|---|---|
| 1 |
family,specificEpithet,*IUCN Red List Category (Europe),*IUCN Red List Criteria (Europe),*IUCN Red List Category (EU 27),*IUCN Red List Criteria (EU 27),*Endemic to Europe?,*Endemic to EU27?,*Habitats Directive Annexes,*Bern Convention Annexes,*CITES Annexes,*EU Wildlife Trade Regulation,*Aquatic species?,*Crop wild relative?,Crop wild relative? |
|
| trunk/inputs/.IUCN/run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
|
| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../../lib/runscripts/datasrc_dir.run
|
|
| 0 | 3 | |
| trunk/inputs/.IUCN/table.run | ||
|---|---|---|
| 1 |
#!/bin/bash -e |
|
| 2 |
. "$(dirname "${BASH_SOURCE[0]}")"/../../lib/runscripts/table.run
|
|
| 0 | 3 | |
| trunk/inputs/.IUCN/Makefile | ||
|---|---|---|
| 1 |
include ../input.Makefile |
|
| trunk/inputs/.IUCN/import_order.txt | ||
|---|---|---|
| 1 |
European_Red_List_Plants |
|
| 2 |
Source |
|
| trunk/inputs/.IUCN/_src/European_Red_List_Plants_Appendix_2.xlsx.url | ||
|---|---|---|
| 1 |
http://www.iucnredlist.org/documents/Europe/European_Red_List_Plants_Appendix_2.xlsx |
|
| 2 |
http://www.iucnredlist.org/initiatives/europe/publications |
|
Also available in: Unified diff
fix: inputs/IUCN/: renamed to inputs/.IUCN/ (see issue #940)