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Revision 1407

Added inputs/SpeciesLink/maps

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inputs/SpeciesLink/maps/src.join.specimens.csv
1
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]",VegBIEN:/specimenreplicate,Comments,Order
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CoordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
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coordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
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CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
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coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
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BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
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FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
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footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
9
County,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
10
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
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StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
12
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
13
Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
14
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
15
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
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locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
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VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
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verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
19
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
20
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
21
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
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MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
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minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
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MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
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MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
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maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
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DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
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decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
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Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
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VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
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verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
32
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
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decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
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Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
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VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
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verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
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MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75
38
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75
39
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75
40
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74
41
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74
42
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74
43
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
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eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
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DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
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MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
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YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
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eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
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CollectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
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DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120
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dateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
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DayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
53
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
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YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
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dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120
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IdentifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120
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IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
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ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
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scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
64
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
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Subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
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infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
67
Species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
68
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
69
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
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Genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
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genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
72
Family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
73
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
74
Order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
75
order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
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Class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
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class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
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Phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
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phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
80
Kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
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kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
82
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
83
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
84
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
85
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
86
FieldNotes,/description/_merge/1,,
87
Notes,/description/_merge/1,,
88
fieldNotes,/description/_merge/1,,
89
Remarks,/description/_merge/2,,158
90
TaxonRemarks,/description/_merge/2,,158
91
taxonRemarks,/description/_merge/2,,158
92
Collector,/verbatimcollectorname,,23
93
RecordedBy,/verbatimcollectorname,,23
94
recordedBy,/verbatimcollectorname,,23
95
CatalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
96
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
97
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
98
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
99
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
100
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
101
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
102
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
103
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
104
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
105
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
106
GlobalUniqueIdentifier,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
107
OccurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
108
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
109
curatorialCollectorNumber,,** No join mapping for curatorialCollectorNumber ** 
110
curatorialFieldNumber,,** No join mapping for curatorialFieldNumber ** 
111
curatorialIdentifiedBy,,** No join mapping for curatorialIdentifiedBy ** 
112
curatorialIndividualCount,,** No join mapping for curatorialIndividualCount ** 
113
curatorialTypeStatus,,** No join mapping for curatorialTypeStatus ** 
114
darwin1BasisOfRecord,,** No join mapping for darwin1BasisOfRecord ** 
115
darwin1BoundingBox,,** No join mapping for darwin1BoundingBox ** 
116
darwin1CatalogNumber,,** No join mapping for darwin1CatalogNumber ** 
117
darwin1Class,,** No join mapping for darwin1Class ** 
118
darwin1CollectionCode,,** No join mapping for darwin1CollectionCode ** 
119
darwin1Collector,,** No join mapping for darwin1Collector ** 
120
darwin1CollectorNumber,,** No join mapping for darwin1CollectorNumber ** 
121
darwin1ContinentOcean,,** No join mapping for darwin1ContinentOcean ** 
122
darwin1CoordinatePrecision,,** No join mapping for darwin1CoordinatePrecision ** 
123
darwin1Country,,** No join mapping for darwin1Country ** 
124
darwin1County,,** No join mapping for darwin1County ** 
125
darwin1DateLastModified,,** No join mapping for darwin1DateLastModified ** 
126
darwin1DayCollected,,** No join mapping for darwin1DayCollected ** 
127
darwin1DayIdentified,,** No join mapping for darwin1DayIdentified ** 
128
darwin1Family,,** No join mapping for darwin1Family ** 
129
darwin1FieldNumber,,** No join mapping for darwin1FieldNumber ** 
130
darwin1Genus,,** No join mapping for darwin1Genus ** 
131
darwin1IdentifiedBy,,** No join mapping for darwin1IdentifiedBy ** 
132
darwin1IndividualCount,,** No join mapping for darwin1IndividualCount ** 
133
darwin1InstitutionCode,,** No join mapping for darwin1InstitutionCode ** 
134
darwin1JulianDay,,** No join mapping for darwin1JulianDay ** 
135
darwin1Kingdom,,** No join mapping for darwin1Kingdom ** 
136
darwin1Latitude,,** No join mapping for darwin1Latitude ** 
137
darwin1Locality,,** No join mapping for darwin1Locality ** 
138
darwin1Longitude,,** No join mapping for darwin1Longitude ** 
139
darwin1MaximumDepth,,** No join mapping for darwin1MaximumDepth ** 
140
darwin1MaximumElevation,,** No join mapping for darwin1MaximumElevation ** 
141
darwin1MinimumDepth,,** No join mapping for darwin1MinimumDepth ** 
142
darwin1MinimumElevation,,** No join mapping for darwin1MinimumElevation ** 
143
darwin1MonthCollected,,** No join mapping for darwin1MonthCollected ** 
144
darwin1MonthIdentified,,** No join mapping for darwin1MonthIdentified ** 
145
darwin1Notes,,** No join mapping for darwin1Notes ** 
146
darwin1Order,,** No join mapping for darwin1Order ** 
147
darwin1Phylum,,** No join mapping for darwin1Phylum ** 
148
darwin1PreparationType,,** No join mapping for darwin1PreparationType ** 
149
darwin1PreviousCatalogNumber,,** No join mapping for darwin1PreviousCatalogNumber ** 
150
darwin1RelatedCatalogItem,,** No join mapping for darwin1RelatedCatalogItem ** 
151
darwin1RelationshipType,,** No join mapping for darwin1RelationshipType ** 
152
darwin1ScientificName,,** No join mapping for darwin1ScientificName ** 
153
darwin1ScientificNameAuthor,,** No join mapping for darwin1ScientificNameAuthor ** 
154
darwin1Sex,,** No join mapping for darwin1Sex ** 
155
darwin1Species,,** No join mapping for darwin1Species ** 
156
darwin1StateProvince,,** No join mapping for darwin1StateProvince ** 
157
darwin1Subspecies,,** No join mapping for darwin1Subspecies ** 
158
darwin1TimeOfDay,,** No join mapping for darwin1TimeOfDay ** 
159
darwin1TypeStatus,,** No join mapping for darwin1TypeStatus ** 
160
darwin1YearCollected,,** No join mapping for darwin1YearCollected ** 
161
darwin1YearIdentified,,** No join mapping for darwin1YearIdentified ** 
162
dwcoreAuthorYearOfScientificName,,** No join mapping for dwcoreAuthorYearOfScientificName ** 
163
dwcoreBasisOfRecord,,** No join mapping for dwcoreBasisOfRecord ** 
164
dwcoreCatalogNumber,,** No join mapping for dwcoreCatalogNumber ** 
165
dwcoreClass,,** No join mapping for dwcoreClass ** 
166
dwcoreCollectionCode,,** No join mapping for dwcoreCollectionCode ** 
167
dwcoreCollector,,** No join mapping for dwcoreCollector ** 
168
dwcoreContinent,,** No join mapping for dwcoreContinent ** 
169
dwcoreCountry,,** No join mapping for dwcoreCountry ** 
170
dwcoreCounty,,** No join mapping for dwcoreCounty ** 
171
dwcoreDateLastModified,,** No join mapping for dwcoreDateLastModified ** 
172
dwcoreDayOfYear,,** No join mapping for dwcoreDayOfYear ** 
173
dwcoreFamily,,** No join mapping for dwcoreFamily ** 
174
dwcoreGenus,,** No join mapping for dwcoreGenus ** 
175
dwcoreGlobalUniqueIdentifier,,** No join mapping for dwcoreGlobalUniqueIdentifier ** 
176
dwcoreInfraspecificEpithet,,** No join mapping for dwcoreInfraspecificEpithet ** 
177
dwcoreInstitutionCode,,** No join mapping for dwcoreInstitutionCode ** 
178
dwcoreKingdom,,** No join mapping for dwcoreKingdom ** 
179
dwcoreLocality,,** No join mapping for dwcoreLocality ** 
180
dwcoreMaximumDepthInMeters,,** No join mapping for dwcoreMaximumDepthInMeters ** 
181
dwcoreMaximumElevationInMeters,,** No join mapping for dwcoreMaximumElevationInMeters ** 
182
dwcoreMinimumDepthInMeters,,** No join mapping for dwcoreMinimumDepthInMeters ** 
183
dwcoreMinimumElevationInMeters,,** No join mapping for dwcoreMinimumElevationInMeters ** 
184
dwcoreOrder,,** No join mapping for dwcoreOrder ** 
185
dwcorePhylum,,** No join mapping for dwcorePhylum ** 
186
dwcoreRemarks,,** No join mapping for dwcoreRemarks ** 
187
dwcoreScientificName,,** No join mapping for dwcoreScientificName ** 
188
dwcoreSex,,** No join mapping for dwcoreSex ** 
189
dwcoreSpecificEpithet,,** No join mapping for dwcoreSpecificEpithet ** 
190
dwcoreStateProvince,,** No join mapping for dwcoreStateProvince ** 
191
geospatialDecimalLatitude,,** No join mapping for geospatialDecimalLatitude ** 
192
geospatialDecimalLongitude,,** No join mapping for geospatialDecimalLongitude ** 
193
geospatialGeodeticDatum,,** No join mapping for geospatialGeodeticDatum ** 
inputs/SpeciesLink/maps/src.specimens.csv
1
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]:brazil_raw"
2
"dwcoreGlobalUniqueIdentifier"
3
"dwcoreDateLastModified"
4
"dwcoreBasisOfRecord"
5
"dwcoreInstitutionCode"
6
"dwcoreCollectionCode"
7
"dwcoreCatalogNumber"
8
"dwcoreRemarks"
9
"dwcoreScientificName"
10
"dwcoreKingdom"
11
"dwcorePhylum"
12
"dwcoreClass"
13
"dwcoreOrder"
14
"dwcoreFamily"
15
"dwcoreGenus"
16
"dwcoreSpecificEpithet"
17
"dwcoreInfraspecificEpithet"
18
"dwcoreAuthorYearOfScientificName"
19
"dwcoreContinent"
20
"dwcoreCountry"
21
"dwcoreStateProvince"
22
"dwcoreCounty"
23
"dwcoreLocality"
24
"dwcoreMinimumElevationInMeters"
25
"dwcoreMaximumElevationInMeters"
26
"dwcoreMinimumDepthInMeters"
27
"dwcoreMaximumDepthInMeters"
28
"dwcoreDayOfYear"
29
"dwcoreCollector"
30
"dwcoreSex"
31
"curatorialIdentifiedBy"
32
"curatorialCollectorNumber"
33
"curatorialFieldNumber"
34
"curatorialTypeStatus"
35
"curatorialIndividualCount"
36
"geospatialDecimalLatitude"
37
"geospatialDecimalLongitude"
38
"geospatialGeodeticDatum"
39
"darwin1DateLastModified"
40
"darwin1InstitutionCode"
41
"darwin1CollectionCode"
42
"darwin1CatalogNumber"
43
"darwin1ScientificName"
44
"darwin1BasisOfRecord"
45
"darwin1Kingdom"
46
"darwin1Phylum"
47
"darwin1Class"
48
"darwin1Order"
49
"darwin1Family"
50
"darwin1Genus"
51
"darwin1Species"
52
"darwin1Subspecies"
53
"darwin1ScientificNameAuthor"
54
"darwin1IdentifiedBy"
55
"darwin1YearIdentified"
56
"darwin1MonthIdentified"
57
"darwin1DayIdentified"
58
"IdentifiedDate"
59
"darwin1TypeStatus"
60
"darwin1CollectorNumber"
61
"darwin1FieldNumber"
62
"darwin1Collector"
63
"darwin1YearCollected"
64
"darwin1MonthCollected"
65
"darwin1DayCollected"
66
"CollectedDate"
67
"darwin1JulianDay"
68
"darwin1TimeOfDay"
69
"darwin1ContinentOcean"
70
"darwin1Country"
71
"darwin1StateProvince"
72
"darwin1County"
73
"darwin1Locality"
74
"darwin1Longitude"
75
"darwin1Latitude"
76
"darwin1CoordinatePrecision"
77
"darwin1BoundingBox"
78
"darwin1MinimumElevation"
79
"darwin1MaximumElevation"
80
"darwin1MinimumDepth"
81
"darwin1MaximumDepth"
82
"darwin1Sex"
83
"darwin1PreparationType"
84
"darwin1IndividualCount"
85
"darwin1PreviousCatalogNumber"
86
"darwin1RelationshipType"
87
"darwin1RelatedCatalogItem"
88
"darwin1Notes"
inputs/SpeciesLink/maps/DwC.specimens.csv
1
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]:brazil_raw","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments"
2
"AuthorYearOfScientificName",,
3
"DayOfYear",,
inputs/SpeciesLink/maps/DwC.specimens.full.csv
1
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]:brazil_raw","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments
2
AcceptedNameUsage,AcceptedNameUsage
3
AcceptedNameUsageID,AcceptedNameUsageID
4
AssociatedMedia,AssociatedMedia
5
AssociatedOccurrences,AssociatedOccurrences
6
AssociatedReferences,AssociatedReferences
7
AssociatedSequences,AssociatedSequences
8
AssociatedTaxa,AssociatedTaxa
9
BasisOfRecord,BasisOfRecord
10
Bed,Bed
11
Behavior,Behavior
12
BoundingBox,BoundingBox
13
CatalogNumber,CatalogNumber
14
Class,Class
15
CollectedDate,CollectedDate
16
CollectionCode,CollectionCode
17
CollectionID,CollectionID
18
Collector,Collector
19
CollectorNumber,CollectorNumber
20
Continent,Continent
21
ContinentOcean,ContinentOcean
22
CoordinatePrecision,CoordinatePrecision
23
CoordinateUncertaintyInMeters,CoordinateUncertaintyInMeters
24
Country,Country
25
CountryCode,CountryCode
26
County,County
27
DataGeneralizations,DataGeneralizations
28
DatasetID,DatasetID
29
DatasetName,DatasetName
30
DateIdentified,DateIdentified
31
DateLastModified,DateLastModified
32
Day,Day
33
DayCollected,DayCollected
34
DayIdentified,DayIdentified
35
Dcterms:accessRights,Dcterms:accessRights
36
Dcterms:bibliographicCitation,Dcterms:bibliographicCitation
37
Dcterms:language,Dcterms:language
38
Dcterms:modified,Dcterms:modified
39
Dcterms:references,Dcterms:references
40
Dcterms:rights,Dcterms:rights
41
Dcterms:rightsHolder,Dcterms:rightsHolder
42
Dcterms:type,Dcterms:type
43
DecimalLatitude,DecimalLatitude
44
DecimalLongitude,DecimalLongitude
45
Disposition,Disposition
46
DynamicProperties,DynamicProperties
47
EarliestAgeOrLowestStage,EarliestAgeOrLowestStage
48
EarliestEonOrLowestEonothem,EarliestEonOrLowestEonothem
49
EarliestEpochOrLowestSeries,EarliestEpochOrLowestSeries
50
EarliestEraOrLowestErathem,EarliestEraOrLowestErathem
51
EarliestPeriodOrLowestSystem,EarliestPeriodOrLowestSystem
52
EndDayOfYear,EndDayOfYear
53
EstablishmentMeans,EstablishmentMeans
54
EventDate,EventDate
55
EventID,EventID
56
EventRemarks,EventRemarks
57
EventTime,EventTime
58
Family,Family
59
FieldNotes,FieldNotes
60
FieldNumber,FieldNumber
61
FootprintSRS,FootprintSRS
62
FootprintSpatialFit,FootprintSpatialFit
63
FootprintWKT,FootprintWKT
64
Formation,Formation
65
Genus,Genus
66
GeodeticDatum,GeodeticDatum
67
GeologicalContextID,GeologicalContextID
68
GeoreferenceProtocol,GeoreferenceProtocol
69
GeoreferenceRemarks,GeoreferenceRemarks
70
GeoreferenceSources,GeoreferenceSources
71
GeoreferenceVerificationStatus,GeoreferenceVerificationStatus
72
GeoreferencedBy,GeoreferencedBy
73
GeoreferencedDate,GeoreferencedDate
74
GlobalUniqueIdentifier,GlobalUniqueIdentifier
75
Group,Group
76
Habitat,Habitat
77
HigherClassification,HigherClassification
78
HigherGeography,HigherGeography
79
HigherGeographyID,HigherGeographyID
80
HighestBiostratigraphicZone,HighestBiostratigraphicZone
81
IdentificationID,IdentificationID
82
IdentificationQualifier,IdentificationQualifier
83
IdentificationReferences,IdentificationReferences
84
IdentificationRemarks,IdentificationRemarks
85
IdentificationVerificationStatus,IdentificationVerificationStatus
86
IdentifiedBy,IdentifiedBy
87
IdentifiedDate,IdentifiedDate
88
IndividualCount,IndividualCount
89
IndividualID,IndividualID
90
InformationWithheld,InformationWithheld
91
InfraspecificEpithet,InfraspecificEpithet
92
InstitutionCode,InstitutionCode
93
InstitutionID,InstitutionID
94
Island,Island
95
IslandGroup,IslandGroup
96
JulianDay,JulianDay
97
Kingdom,Kingdom
98
LatestAgeOrHighestStage,LatestAgeOrHighestStage
99
LatestEonOrHighestEonothem,LatestEonOrHighestEonothem
100
LatestEpochOrHighestSeries,LatestEpochOrHighestSeries
101
LatestEraOrHighestErathem,LatestEraOrHighestErathem
102
LatestPeriodOrHighestSystem,LatestPeriodOrHighestSystem
103
Latitude,Latitude
104
LifeStage,LifeStage
105
LithostratigraphicTerms,LithostratigraphicTerms
106
Locality,Locality
107
LocationAccordingTo,LocationAccordingTo
108
LocationID,LocationID
109
LocationRemarks,LocationRemarks
110
Longitude,Longitude
111
LowestBiostratigraphicZone,LowestBiostratigraphicZone
112
MaximumDepth,MaximumDepth
113
MaximumDepthInMeters,MaximumDepthInMeters
114
MaximumDistanceAboveSurfaceInMeters,MaximumDistanceAboveSurfaceInMeters
115
MaximumElevation,MaximumElevation
116
MaximumElevationInMeters,MaximumElevationInMeters
117
MeasurementAccuracy,MeasurementAccuracy
118
MeasurementDeterminedBy,MeasurementDeterminedBy
119
MeasurementDeterminedDate,MeasurementDeterminedDate
120
MeasurementID,MeasurementID
121
MeasurementMethod,MeasurementMethod
122
MeasurementRemarks,MeasurementRemarks
123
MeasurementType,MeasurementType
124
MeasurementUnit,MeasurementUnit
125
MeasurementValue,MeasurementValue
126
Member,Member
127
MinimumDepth,MinimumDepth
128
MinimumDepthInMeters,MinimumDepthInMeters
129
MinimumDistanceAboveSurfaceInMeters,MinimumDistanceAboveSurfaceInMeters
130
MinimumElevation,MinimumElevation
131
MinimumElevationInMeters,MinimumElevationInMeters
132
Month,Month
133
MonthCollected,MonthCollected
134
MonthIdentified,MonthIdentified
135
Municipality,Municipality
136
NameAccordingTo,NameAccordingTo
137
NameAccordingToID,NameAccordingToID
138
NamePublishedIn,NamePublishedIn
139
NamePublishedInID,NamePublishedInID
140
NamePublishedInYear,NamePublishedInYear
141
NomenclaturalCode,NomenclaturalCode
142
NomenclaturalStatus,NomenclaturalStatus
143
Notes,Notes
144
OccurrenceID,OccurrenceID
145
OccurrenceRemarks,OccurrenceRemarks
146
OccurrenceStatus,OccurrenceStatus
147
Order,Order
148
OriginalNameUsage,OriginalNameUsage
149
OriginalNameUsageID,OriginalNameUsageID
150
OtherCatalogNumbers,OtherCatalogNumbers
151
OwnerInstitutionCode,OwnerInstitutionCode
152
ParentNameUsage,ParentNameUsage
153
ParentNameUsageID,ParentNameUsageID
154
Phylum,Phylum
155
PointRadiusSpatialFit,PointRadiusSpatialFit
156
PreparationType,PreparationType
157
Preparations,Preparations
158
PreviousCatalogNumber,PreviousCatalogNumber
159
PreviousIdentifications,PreviousIdentifications
160
RecordNumber,RecordNumber
161
RecordedBy,RecordedBy
162
RelatedCatalogItem,RelatedCatalogItem
163
RelatedResourceID,RelatedResourceID
164
RelationshipAccordingTo,RelationshipAccordingTo
165
RelationshipEstablishedDate,RelationshipEstablishedDate
166
RelationshipOfResource,RelationshipOfResource
167
RelationshipRemarks,RelationshipRemarks
168
RelationshipType,RelationshipType
169
Remarks,Remarks
170
ReproductiveCondition,ReproductiveCondition
171
ResourceID,ResourceID
172
ResourceRelationshipID,ResourceRelationshipID
173
SamplingEffort,SamplingEffort
174
SamplingProtocol,SamplingProtocol
175
ScientificName,ScientificName
176
ScientificNameAuthor,ScientificNameAuthor
177
ScientificNameAuthorship,ScientificNameAuthorship
178
ScientificNameID,ScientificNameID
179
Sex,Sex
180
Species,Species
181
SpecificEpithet,SpecificEpithet
182
StartDayOfYear,StartDayOfYear
183
StateProvince,StateProvince
184
Subgenus,Subgenus
185
Subspecies,Subspecies
186
TaxonConceptID,TaxonConceptID
187
TaxonID,TaxonID
188
TaxonRank,TaxonRank
189
TaxonRemarks,TaxonRemarks
190
TaxonomicStatus,TaxonomicStatus
191
TimeOfDay,TimeOfDay
192
TypeStatus,TypeStatus
193
VerbatimCoordinateSystem,VerbatimCoordinateSystem
194
VerbatimCoordinates,VerbatimCoordinates
195
VerbatimDepth,VerbatimDepth
196
VerbatimElevation,VerbatimElevation
197
VerbatimEventDate,VerbatimEventDate
198
VerbatimLatitude,VerbatimLatitude
199
VerbatimLocality,VerbatimLocality
200
VerbatimLongitude,VerbatimLongitude
201
VerbatimSRS,VerbatimSRS
202
VerbatimTaxonRank,VerbatimTaxonRank
203
VernacularName,VernacularName
204
WaterBody,WaterBody
205
Year,Year
206
YearCollected,YearCollected
207
YearIdentified,YearIdentified
208
acceptedNameUsage,acceptedNameUsage
209
acceptedNameUsageID,acceptedNameUsageID
210
associatedMedia,associatedMedia
211
associatedOccurrences,associatedOccurrences
212
associatedReferences,associatedReferences
213
associatedSequences,associatedSequences
214
associatedTaxa,associatedTaxa
215
basisOfRecord,basisOfRecord
216
bed,bed
217
behavior,behavior
218
catalogNumber,catalogNumber
219
class,class
220
collectionCode,collectionCode
221
collectionID,collectionID
222
continent,continent
223
coordinatePrecision,coordinatePrecision
224
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters
225
country,country
226
countryCode,countryCode
227
county,county
228
dataGeneralizations,dataGeneralizations
229
datasetID,datasetID
230
datasetName,datasetName
231
dateIdentified,dateIdentified
232
dateIdentified/_alt,dateIdentified/_alt
233
day,day
234
dcterms:accessRights,dcterms:accessRights
235
dcterms:bibliographicCitation,dcterms:bibliographicCitation
236
dcterms:language,dcterms:language
237
dcterms:modified,dcterms:modified
238
dcterms:references,dcterms:references
239
dcterms:rights,dcterms:rights
240
dcterms:rightsHolder,dcterms:rightsHolder
241
dcterms:type,dcterms:type
242
decimalLatitude,decimalLatitude
243
decimalLongitude,decimalLongitude
244
disposition,disposition
245
dynamicProperties,dynamicProperties
246
earliestAgeOrLowestStage,earliestAgeOrLowestStage
247
earliestEonOrLowestEonothem,earliestEonOrLowestEonothem
248
earliestEpochOrLowestSeries,earliestEpochOrLowestSeries
249
earliestEraOrLowestErathem,earliestEraOrLowestErathem
250
earliestPeriodOrLowestSystem,earliestPeriodOrLowestSystem
251
endDayOfYear,endDayOfYear
252
establishmentMeans,establishmentMeans
253
eventDate,eventDate
254
eventDate/_alt,eventDate/_alt
255
eventID,eventID
256
eventRemarks,eventRemarks
257
eventTime,eventTime
258
family,family
259
fieldNotes,fieldNotes
260
fieldNumber,fieldNumber
261
footprintSRS,footprintSRS
262
footprintSpatialFit,footprintSpatialFit
263
footprintWKT,footprintWKT
264
formation,formation
265
genus,genus
266
geodeticDatum,geodeticDatum
267
geologicalContextID,geologicalContextID
268
georeferenceProtocol,georeferenceProtocol
269
georeferenceRemarks,georeferenceRemarks
270
georeferenceSources,georeferenceSources
271
georeferenceVerificationStatus,georeferenceVerificationStatus
272
georeferencedBy,georeferencedBy
273
georeferencedDate,georeferencedDate
274
group,group
275
habitat,habitat
276
higherClassification,higherClassification
277
higherGeography,higherGeography
278
higherGeographyID,higherGeographyID
279
highestBiostratigraphicZone,highestBiostratigraphicZone
280
identificationID,identificationID
281
identificationQualifier,identificationQualifier
282
identificationReferences,identificationReferences
283
identificationRemarks,identificationRemarks
284
identificationVerificationStatus,identificationVerificationStatus
285
identifiedBy,identifiedBy
286
individualCount,individualCount
287
individualID,individualID
288
informationWithheld,informationWithheld
289
infraspecificEpithet,infraspecificEpithet
290
institutionCode,institutionCode
291
institutionID,institutionID
292
island,island
293
islandGroup,islandGroup
294
kingdom,kingdom
295
latestAgeOrHighestStage,latestAgeOrHighestStage
296
latestEonOrHighestEonothem,latestEonOrHighestEonothem
297
latestEpochOrHighestSeries,latestEpochOrHighestSeries
298
latestEraOrHighestErathem,latestEraOrHighestErathem
299
latestPeriodOrHighestSystem,latestPeriodOrHighestSystem
300
lifeStage,lifeStage
301
lithostratigraphicTerms,lithostratigraphicTerms
302
locality,locality
303
locationAccordingTo,locationAccordingTo
304
locationID,locationID
305
locationRemarks,locationRemarks
306
lowestBiostratigraphicZone,lowestBiostratigraphicZone
307
maximumDepthInMeters,maximumDepthInMeters
308
maximumDistanceAboveSurfaceInMeters,maximumDistanceAboveSurfaceInMeters
309
maximumElevationInMeters,maximumElevationInMeters
310
measurementAccuracy,measurementAccuracy
311
measurementDeterminedBy,measurementDeterminedBy
312
measurementDeterminedDate,measurementDeterminedDate
313
measurementID,measurementID
314
measurementMethod,measurementMethod
315
measurementRemarks,measurementRemarks
316
measurementType,measurementType
317
measurementUnit,measurementUnit
318
measurementValue,measurementValue
319
member,member
320
minimumDepthInMeters,minimumDepthInMeters
321
minimumDistanceAboveSurfaceInMeters,minimumDistanceAboveSurfaceInMeters
322
minimumElevationInMeters,minimumElevationInMeters
323
month,month
324
municipality,municipality
325
nameAccordingTo,nameAccordingTo
326
nameAccordingToID,nameAccordingToID
327
namePublishedIn,namePublishedIn
328
namePublishedInID,namePublishedInID
329
namePublishedInYear,namePublishedInYear
330
nomenclaturalCode,nomenclaturalCode
331
nomenclaturalStatus,nomenclaturalStatus
332
occurrenceID,occurrenceID
333
occurrenceRemarks,occurrenceRemarks
334
occurrenceStatus,occurrenceStatus
335
order,order
336
originalNameUsage,originalNameUsage
337
originalNameUsageID,originalNameUsageID
338
otherCatalogNumbers,otherCatalogNumbers
339
ownerInstitutionCode,ownerInstitutionCode
340
parentNameUsage,parentNameUsage
341
parentNameUsageID,parentNameUsageID
342
phylum,phylum
343
pointRadiusSpatialFit,pointRadiusSpatialFit
344
preparations,preparations
345
previousIdentifications,previousIdentifications
346
recordNumber,recordNumber
347
recordedBy,recordedBy
348
relatedResourceID,relatedResourceID
349
relationshipAccordingTo,relationshipAccordingTo
350
relationshipEstablishedDate,relationshipEstablishedDate
351
relationshipOfResource,relationshipOfResource
352
relationshipRemarks,relationshipRemarks
353
reproductiveCondition,reproductiveCondition
354
resourceID,resourceID
355
resourceRelationshipID,resourceRelationshipID
356
samplingEffort,samplingEffort
357
samplingProtocol,samplingProtocol
358
scientificName,scientificName
359
scientificNameAuthorship,scientificNameAuthorship
360
scientificNameID,scientificNameID
361
sex,sex
362
specificEpithet,specificEpithet
363
startDayOfYear,startDayOfYear
364
stateProvince,stateProvince
365
subgenus,subgenus
366
taxonConceptID,taxonConceptID
367
taxonID,taxonID
368
taxonRank,taxonRank
369
taxonRemarks,taxonRemarks
370
taxonomicStatus,taxonomicStatus
371
typeStatus,typeStatus
372
verbatimCoordinateSystem,verbatimCoordinateSystem
373
verbatimCoordinates,verbatimCoordinates
374
verbatimDepth,verbatimDepth
375
verbatimElevation,verbatimElevation
376
verbatimEventDate,verbatimEventDate
377
verbatimLatitude,verbatimLatitude
378
verbatimLocality,verbatimLocality
379
verbatimLongitude,verbatimLongitude
380
verbatimSRS,verbatimSRS
381
verbatimTaxonRank,verbatimTaxonRank
382
vernacularName,vernacularName
383
waterBody,waterBody
384
year,year
385
AuthorYearOfScientificName,,
386
DayOfYear,,
inputs/SpeciesLink/maps/VegBIEN.specimens.csv
1
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]:brazil_raw",VegBIEN:/specimenreplicate,Comments,Order
2
CoordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
3
coordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88
4
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
5
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89
6
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
7
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
8
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91
9
County,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
10
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66
11
StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
12
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65
13
Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
14
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63
15
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
16
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68
17
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
18
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
19
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
20
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
21
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
22
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
23
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
24
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
25
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
26
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
27
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
28
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
29
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
30
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
31
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
32
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
33
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
34
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
35
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
36
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
37
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75
38
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75
39
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75
40
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74
41
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74
42
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74
43
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
44
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
45
DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
46
MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
47
YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
48
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
49
CollectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
50
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120
51
dateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120
52
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120
53
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120
54
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120
55
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120
56
IdentifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120
57
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
58
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
59
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
60
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134
61
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
62
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
63
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
64
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
65
Subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
66
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150
67
Species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
68
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
69
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149
70
Genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
71
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147
72
Family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
73
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146
74
Order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
75
order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145
76
Class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
77
class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144
78
Phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
79
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143
80
Kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
81
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142
82
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
83
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
84
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
85
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
86
FieldNotes,/description/_merge/1,,
87
Notes,/description/_merge/1,,
88
fieldNotes,/description/_merge/1,,
89
Remarks,/description/_merge/2,,158
90
TaxonRemarks,/description/_merge/2,,158
91
taxonRemarks,/description/_merge/2,,158
92
Collector,/verbatimcollectorname,,23
93
RecordedBy,/verbatimcollectorname,,23
94
recordedBy,/verbatimcollectorname,,23
95
CatalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
96
catalogNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/catalognumber_dwc,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
97
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
98
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
99
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22
100
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
101
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9
102
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
103
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
104
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
105
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8
106
GlobalUniqueIdentifier,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
107
OccurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
108
occurrenceID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/sourceaccessioncode,"Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
109
AcceptedNameUsage,,,135
110
AcceptedNameUsageID,,,128
111
AssociatedMedia,,,36
112
AssociatedOccurrences,,,38
113
AssociatedReferences,,,37
114
AssociatedSequences,,,39
115
AssociatedTaxa,,,40
116
AuthorYearOfScientificName,,
117
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
118
Bed,,,117
119
Behavior,,,29
120
Continent,,Brad: OMIT,59
121
ContinentOcean,,Brad: OMIT,59
122
CountryCode,,,64
123
DataGeneralizations,,,17
124
DatasetID,,,10
125
DatasetName,,,13
126
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
127
Day,,Brad: OMIT,50
128
DayOfYear,,
129
Dcterms:accessRights,,,5
130
Dcterms:bibliographicCitation,,,6
131
Dcterms:language,,,2
132
Dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
133
Dcterms:references,,,7
134
Dcterms:rights,,,3
135
Dcterms:rightsHolder,,,4
136
Dcterms:type,,,0
137
Disposition,,,33
138
DynamicProperties,,,18
139
EarliestAgeOrLowestStage,,,109
140
EarliestEonOrLowestEonothem,,,101
141
EarliestEpochOrLowestSeries,,,107
142
EarliestEraOrLowestErathem,,,103
143
EarliestPeriodOrLowestSystem,,,105
144
EndDayOfYear,,,47
145
EstablishmentMeans,,,30
146
EventID,,,41
147
EventRemarks,,,55
148
EventTime,,Brad: OMIT,45
149
FootprintSRS,,,92
150
FootprintSpatialFit,,,93
151
Formation,,,115
152
GeodeticDatum,,,87
153
GeologicalContextID,,,100
154
GeoreferenceProtocol,,,96
155
GeoreferenceRemarks,,,99
156
GeoreferenceSources,,,97
157
GeoreferenceVerificationStatus,,,98
158
GeoreferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
159
GeoreferencedDate,,,95
160
Group,,,114
161
HigherClassification,,,141
162
HigherGeography,,,58
163
HigherGeographyID,,,57
164
HighestBiostratigraphicZone,,,112
165
IdentificationID,,,118
166
IdentificationQualifier,,,124
167
IdentificationReferences,,,121
168
IdentificationRemarks,,,123
169
IdentificationVerificationStatus,,,122
170
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
171
IndividualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
172
InformationWithheld,,,16
173
InstitutionCode,,,
174
Island,,,62
175
IslandGroup,,,61
176
JulianDay,,Brad: OMIT,50
177
LatestAgeOrHighestStage,,,110
178
LatestEonOrHighestEonothem,,,102
179
LatestEpochOrHighestSeries,,,108
180
LatestEraOrHighestErathem,,,104
181
LatestPeriodOrHighestSystem,,,106
182
LifeStage,,,27
183
LithostratigraphicTerms,,,113
184
LocationAccordingTo,,,78
185
LocationID,,,56
186
LocationRemarks,,,79
187
LowestBiostratigraphicZone,,,111
188
MaximumDistanceAboveSurfaceInMeters,,,77
189
MeasurementAccuracy,,,169
190
MeasurementDeterminedBy,,,172
191
MeasurementDeterminedDate,,,171
192
MeasurementID,,,166
193
MeasurementMethod,,,173
194
MeasurementRemarks,,,174
195
MeasurementType,,,167
196
MeasurementUnit,,,170
197
MeasurementValue,,,168
198
Member,,,116
199
MinimumDistanceAboveSurfaceInMeters,,,76
200
Month,,,49
201
Municipality,,,67
202
NameAccordingTo,,,138
203
NameAccordingToID,,,131
204
NamePublishedIn,,,139
205
NamePublishedInID,,,132
206
NamePublishedInYear,,,140
207
NomenclaturalCode,,,155
208
NomenclaturalStatus,,,157
209
OccurrenceRemarks,,,21
210
OccurrenceStatus,,,31
211
OriginalNameUsage,,,137
212
OriginalNameUsageID,,,130
213
OtherCatalogNumbers,,,34
214
OwnerInstitutionCode,,,14
215
ParentNameUsage,,,136
216
ParentNameUsageID,,,129
217
PointRadiusSpatialFit,,,90
218
PreparationType,,Brad: OMIT,32
219
Preparations,,Brad: OMIT,32
220
PreviousCatalogNumber,,?; Brad: OMIT,35
221
PreviousIdentifications,,Brad: OMIT,35
222
RelatedCatalogItem,,Brad: OMIT,161
223
RelatedResourceID,,Brad: OMIT,161
224
RelationshipAccordingTo,,,163
225
RelationshipEstablishedDate,,,164
226
RelationshipOfResource,,Brad: OMIT,162
227
RelationshipRemarks,,,165
228
RelationshipType,,Brad: OMIT,162
229
ReproductiveCondition,,,28
230
ResourceID,,,160
231
ResourceRelationshipID,,,159
232
SamplingEffort,,,43
233
SamplingProtocol,,,42
234
ScientificNameID,,,127
235
StartDayOfYear,,,46
236
Subgenus,,,148
237
TaxonConceptID,,,133
238
TaxonID,,,126
239
TaxonRank,,,151
240
TaxonomicStatus,,,156
241
TimeOfDay,,Brad: OMIT,45
242
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
243
VerbatimCoordinateSystem,,,83
244
VerbatimCoordinates,,,80
245
VerbatimDepth,,,73
246
VerbatimElevation,,,70
247
VerbatimEventDate,,,51
248
VerbatimSRS,,,84
249
VerbatimTaxonRank,,,152
250
VernacularName,,,154
251
WaterBody,,,60
252
Year,,,48
253
acceptedNameUsage,,,135
254
acceptedNameUsageID,,,128
255
associatedMedia,,,36
256
associatedOccurrences,,,38
257
associatedReferences,,,37
258
associatedSequences,,,39
259
associatedTaxa,,,40
260
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
261
bed,,,117
262
behavior,,,29
263
continent,,Brad: OMIT,59
264
countryCode,,,64
265
dataGeneralizations,,,17
266
datasetID,,,10
267
datasetName,,,13
268
day,,Brad: OMIT,50
269
dcterms:accessRights,,,5
270
dcterms:bibliographicCitation,,,6
271
dcterms:language,,,2
272
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
273
dcterms:references,,,7
274
dcterms:rights,,,3
275
dcterms:rightsHolder,,,4
276
dcterms:type,,,0
277
disposition,,,33
278
dynamicProperties,,,18
279
earliestAgeOrLowestStage,,,109
280
earliestEonOrLowestEonothem,,,101
281
earliestEpochOrLowestSeries,,,107
282
earliestEraOrLowestErathem,,,103
283
earliestPeriodOrLowestSystem,,,105
284
endDayOfYear,,,47
285
establishmentMeans,,,30
286
eventID,,,41
287
eventRemarks,,,55
288
eventTime,,Brad: OMIT,45
289
footprintSRS,,,92
290
footprintSpatialFit,,,93
291
formation,,,115
292
geodeticDatum,,,87
293
geologicalContextID,,,100
294
georeferenceProtocol,,,96
295
georeferenceRemarks,,,99
296
georeferenceSources,,,97
297
georeferenceVerificationStatus,,,98
298
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
299
georeferencedDate,,,95
300
group,,,114
301
higherClassification,,,141
302
higherGeography,,,58
303
higherGeographyID,,,57
304
highestBiostratigraphicZone,,,112
305
identificationID,,,118
306
identificationQualifier,,,124
307
identificationReferences,,,121
308
identificationRemarks,,,123
309
identificationVerificationStatus,,,122
310
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
311
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
312
informationWithheld,,,16
313
institutionCode,,,
314
island,,,62
315
islandGroup,,,61
316
latestAgeOrHighestStage,,,110
317
latestEonOrHighestEonothem,,,102
318
latestEpochOrHighestSeries,,,108
319
latestEraOrHighestErathem,,,104
320
latestPeriodOrHighestSystem,,,106
321
lifeStage,,,27
322
lithostratigraphicTerms,,,113
323
locationAccordingTo,,,78
324
locationID,,,56
325
locationRemarks,,,79
326
lowestBiostratigraphicZone,,,111
327
maximumDistanceAboveSurfaceInMeters,,,77
328
measurementAccuracy,,,169
329
measurementDeterminedBy,,,172
330
measurementDeterminedDate,,,171
331
measurementID,,,166
332
measurementMethod,,,173
333
measurementRemarks,,,174
334
measurementType,,,167
335
measurementUnit,,,170
336
measurementValue,,,168
337
member,,,116
338
minimumDistanceAboveSurfaceInMeters,,,76
339
month,,,49
340
municipality,,,67
341
nameAccordingTo,,,138
342
nameAccordingToID,,,131
343
namePublishedIn,,,139
344
namePublishedInID,,,132
345
namePublishedInYear,,,140
346
nomenclaturalCode,,,155
347
nomenclaturalStatus,,,157
348
occurrenceRemarks,,,21
349
occurrenceStatus,,,31
350
originalNameUsage,,,137
351
originalNameUsageID,,,130
352
otherCatalogNumbers,,,34
353
ownerInstitutionCode,,,14
354
parentNameUsage,,,136
355
parentNameUsageID,,,129
356
pointRadiusSpatialFit,,,90
357
preparations,,Brad: OMIT,32
358
previousIdentifications,,Brad: OMIT,35
359
relatedResourceID,,Brad: OMIT,161
360
relationshipAccordingTo,,,163
361
relationshipEstablishedDate,,,164
362
relationshipOfResource,,Brad: OMIT,162
363
relationshipRemarks,,,165
364
reproductiveCondition,,,28
365
resourceID,,,160
366
resourceRelationshipID,,,159
367
samplingEffort,,,43
368
samplingProtocol,,,42
369
scientificNameID,,,127
370
startDayOfYear,,,46
371
subgenus,,,148
372
taxonConceptID,,,133
373
taxonID,,,126
374
taxonRank,,,151
375
taxonomicStatus,,,156
376
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
377
verbatimCoordinateSystem,,,83
378
verbatimCoordinates,,,80
379
verbatimDepth,,,73
380
verbatimElevation,,,70
381
verbatimEventDate,,,51
382
verbatimSRS,,,84
383
verbatimTaxonRank,,,152
384
vernacularName,,,154
385
waterBody,,,60
386
year,,,48

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