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Revision 14079

Added by Aaron Marcuse-Kubitza over 10 years ago

bugfix: /README.TXT: logs glob: don't unintentionally match . or ..

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trunk/README.TXT
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		Note that import_all will take up to an hour to import the NCBI backbone
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			and other metadata before returning control to the shell.
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		To view progress:
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			tail inputs/{.,}*/*/logs/$version.log.sql
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			tail inputs/{.,}??*/*/logs/$version.log.sql
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	note: at the beginning of the import, the system may send out CPU load
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		warning e-mails. these can safely be ignored. (they happen because the
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		parallel imports use all the available cores.)
......
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	upload logs: make inputs/upload live=1
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	On local machine: make inputs/download-logs live=1
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	check for disk space errors:
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		grep --files-with-matches -F 'No space left on device' inputs/{.,}*/*/logs/$version.log.sql
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		grep --files-with-matches -F 'No space left on device' inputs/{.,}??*/*/logs/$version.log.sql
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		if there are any matches:
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			manually reimport these datasources using the steps under
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				Single datasource import
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			bin/after_import &
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			wait for the import to finish
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	tail inputs/{.,}*/*/logs/$version.log.sql
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	tail inputs/{.,}??*/*/logs/$version.log.sql
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	In the output, search for "Command exited with non-zero status"
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	For inputs that have this, fix the associated bug(s)
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	If many inputs have errors, discard the current (partial) import:
......
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				now in the copied tab instead
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		Insert a copy of the leftmost "By column" column group before it
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		export version=<version>
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		bin/import_date inputs/{.,}*/*/logs/$version.log.sql
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		bin/import_date inputs/{.,}??*/*/logs/$version.log.sql
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		Update the import date in the upper-right corner
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		bin/import_times inputs/{.,}*/*/logs/$version.log.sql
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		bin/import_times inputs/{.,}??*/*/logs/$version.log.sql
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		Paste the output over the # Rows/Time columns, making sure that the
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			row counts match up with the previous import's row counts
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		If the row counts do not match up, insert or reorder rows as needed
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			until they do. Get the datasource names from the log file footers:
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			tail inputs/{.,}*/*/logs/$version.log.sql
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			tail inputs/{.,}??*/*/logs/$version.log.sql
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		Commit: svn ci -m 'inputs/import.stats.xls: updated import times'
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	Running individual steps separately:
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	To run TNRS:

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