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Name Size Revision Age Author Comment
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
+header.dat 2.26 KB 7218 almost 12 years Aaron Marcuse-Kubitza inputs/Madidi/: Refreshed. Note that new export...
.map.csv.last_cleanup 0 Bytes 7218 almost 12 years Aaron Marcuse-Kubitza inputs/Madidi/: Refreshed. Note that new export...
VegBIEN.csv 42 Bytes 10301 over 11 years Aaron Marcuse-Kubitza inputs/Madidi/: switched to new-style import
header.csv 0 Bytes 7218 almost 12 years Aaron Marcuse-Kubitza inputs/Madidi/: Refreshed. Note that new export...
map.csv 6.17 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
new_terms.csv 1.08 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
postprocess.sql 108 Bytes 10301 over 11 years Aaron Marcuse-Kubitza inputs/Madidi/: switched to new-style import
run 63 Bytes 10301 over 11 years Aaron Marcuse-Kubitza inputs/Madidi/: switched to new-style import
test.xml.ref 11.8 KB 12886 over 10 years Aaron Marcuse-Kubitza schemas/vegbien.sql: specimenreplicate.institut...
unmapped_terms.csv 435 Bytes 10209 over 11 years Aaron Marcuse-Kubitza inputs/*/*/map.csv for CSV tables with a row_nu...
  • svn:ignore: *

Latest revisions

# Date Author Comment
12886 03/24/2014 05:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate.institution_id: renamed to duplicate_institutions_sourcelist_id, as decided in the conference calls (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2)

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

10344 07/19/2013 09:30 AM Aaron Marcuse-Kubitza

bugfix: inputs/Madidi/IndividualObservation/map.csv: removed derived column FieldFamilyFullName#originalFamily, which should not be in the map table because it can contain only columns that are initially in the table before running postprocess.sql

10301 07/17/2013 11:40 AM Aaron Marcuse-Kubitza

inputs/Madidi/: switched to new-style import

10298 07/17/2013 09:27 AM Aaron Marcuse-Kubitza

inputs/Madidi/IndividualObservation/map.csv: translated 1:many mappings ( FieldFamilyFullName->{family,originalFamily} ) to derived columns (in postprocess.sql) to work with new-style import, which must have a 1:1 relationship between input and output columns

10292 07/17/2013 04:24 AM Aaron Marcuse-Kubitza

inputs/*/*/map.csv: replaced /_first filter with mapping to DUPLICATE special term (VegCore.vegpath.org?DUPLICATE). this removes collisions that don't need a postprocessing formula to combine the columns.

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