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Name Size Revision Age Author Comment
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
.map.csv.last_cleanup 0 Bytes 6347 almost 12 years Aaron Marcuse-Kubitza Added inputs/VASCAN/
VegBIEN.csv 42 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
header.csv 394 Bytes 10091 over 11 years Aaron Marcuse-Kubitza added inputs/*/*/header.csv for CSV inputs, whi...
map.csv 882 Bytes 10196 over 11 years Aaron Marcuse-Kubitza bugfix: inputs/VASCAN/Taxon/map.csv: added miss...
run 63 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
test.xml.ref 13.4 KB 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
unmapped_terms.csv 234 Bytes 10848 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: don't map...
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Latest revisions

# Date Author Comment
11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

10848 08/31/2013 07:36 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: don't map datasetURL to source.url for taxa-only data (this mapping should only occur for Source tables)

10260 07/11/2013 12:53 PM Aaron Marcuse-Kubitza

inputs/*/ which do not contain any explicit collisions (wiki.vegpath.org/2013-06-27_conference_call#To-do-for-Aaron > #3.2 > the following datasources ...): switched to new-style import, which adds the staging table column renaming

10196 07/09/2013 02:59 PM Aaron Marcuse-Kubitza

bugfix: inputs/VASCAN/Taxon/map.csv: added missing row_num column added by bin/csv2db

10091 06/27/2013 12:28 PM Aaron Marcuse-Kubitza

added inputs/*/*/header.csv for CSV inputs, which are now generated by inputs/input.Makefile %/install

9882 06/12/2013 10:49 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: genus->taxonlabel.taxonomicname: filter out genera that contain numbers (using new _filter_genus()), which break TNRS and prevent it from matching any other parts of the name. later, these genera can instead be moved to the end of the name, where TNRS will correctly match them as Unmatched_terms.

8801 05/02/2013 08:53 PM Aaron Marcuse-Kubitza

inputs/input.Makefile: SVN: add, %/add: */logs: also svn:ignore *.gz, used for compressed log files

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