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Revision 14284

inputs/.TNRS/schema.sql: added new derived columns to derived views

View differences:

trunk/inputs/.TNRS/schema.sql
1078 1078
    taxon_match."*Accepted_name_lsid",
1079 1079
    taxon_match.is_valid_match,
1080 1080
    taxon_match.scrubbed_unique_taxon_name,
1081
    taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
1082
    taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1083
    taxon_match.matched_has_accepted,
1081 1084
    taxon_match."__accepted_{genus,specific_epithet}",
1082 1085
    taxon_match."[accepted_]genus__@DwC__@vegpath.org",
1083 1086
    taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
1085 1088
    taxon_match."__accepted_infraspecific_{rank,epithet}",
1086 1089
    taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1087 1090
    taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
1088
    taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1089
    taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
1091
    taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
1092
    taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
1093
    taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
1094
    taxon_match."[scrubbed_]genus__@DwC__@vegpath.org",
1095
    taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
1096
    taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
1097
    taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1098
    taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
1099
    taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
1100
    taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
1101
    taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"
1090 1102
   FROM taxon_match
1091 1103
  WHERE (taxon_match."*Selected" = 'true'::text);
1092 1104

  
......
1148 1160
    taxon_best_match."*Accepted_name_lsid",
1149 1161
    taxon_best_match.is_valid_match,
1150 1162
    taxon_best_match.scrubbed_unique_taxon_name,
1163
    taxon_best_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
1164
    taxon_best_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1165
    taxon_best_match.matched_has_accepted,
1151 1166
    taxon_best_match."__accepted_{genus,specific_epithet}",
1152 1167
    taxon_best_match."[accepted_]genus__@DwC__@vegpath.org",
1153 1168
    taxon_best_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
1155 1170
    taxon_best_match."__accepted_infraspecific_{rank,epithet}",
1156 1171
    taxon_best_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1157 1172
    taxon_best_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
1158
    taxon_best_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1159 1173
    taxon_best_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
1174
    taxon_best_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
1175
    taxon_best_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
1176
    taxon_best_match."[scrubbed_]genus__@DwC__@vegpath.org",
1177
    taxon_best_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
1178
    taxon_best_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
1179
    taxon_best_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1180
    taxon_best_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
1181
    taxon_best_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
1182
    taxon_best_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
1183
    taxon_best_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
1160 1184
    map_taxonomic_status(taxon_best_match."*Taxonomic_status", taxon_best_match."*Accepted_name") AS "taxonomicStatus",
1161 1185
        CASE
1162 1186
            WHEN (taxon_best_match."*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, taxon_best_match."*Accepted_name_family", taxon_best_match."*Unmatched_terms")
......
1223 1247
    "MatchedTaxon"."*Accepted_name_lsid",
1224 1248
    "MatchedTaxon".is_valid_match,
1225 1249
    "MatchedTaxon".scrubbed_unique_taxon_name,
1250
    "MatchedTaxon"."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
1251
    "MatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1252
    "MatchedTaxon".matched_has_accepted,
1226 1253
    "MatchedTaxon"."__accepted_{genus,specific_epithet}",
1227 1254
    "MatchedTaxon"."[accepted_]genus__@DwC__@vegpath.org",
1228 1255
    "MatchedTaxon"."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
1230 1257
    "MatchedTaxon"."__accepted_infraspecific_{rank,epithet}",
1231 1258
    "MatchedTaxon"."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1232 1259
    "MatchedTaxon"."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
1233
    "MatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1234 1260
    "MatchedTaxon"."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
1261
    "MatchedTaxon"."[scrubbed_]taxonRank__@DwC__@vegpath.org",
1262
    "MatchedTaxon"."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
1263
    "MatchedTaxon"."[scrubbed_]genus__@DwC__@vegpath.org",
1264
    "MatchedTaxon"."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
1265
    "MatchedTaxon"."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
1266
    "MatchedTaxon"."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1267
    "MatchedTaxon"."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
1268
    "MatchedTaxon"."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
1269
    "MatchedTaxon"."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
1270
    "MatchedTaxon"."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
1235 1271
    "MatchedTaxon"."taxonomicStatus",
1236 1272
    "MatchedTaxon".accepted_morphospecies_binomial
1237 1273
   FROM "MatchedTaxon"
......
1503 1539
    "ValidMatchedTaxon"."*Warnings",
1504 1540
    "ValidMatchedTaxon"."*Accepted_name_lsid",
1505 1541
    "ValidMatchedTaxon".is_valid_match,
1542
    "ValidMatchedTaxon"."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
1543
    "ValidMatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1544
    "ValidMatchedTaxon".matched_has_accepted,
1506 1545
    "ValidMatchedTaxon"."__accepted_{genus,specific_epithet}",
1507 1546
    "ValidMatchedTaxon"."[accepted_]genus__@DwC__@vegpath.org",
1508 1547
    "ValidMatchedTaxon"."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
1510 1549
    "ValidMatchedTaxon"."__accepted_infraspecific_{rank,epithet}",
1511 1550
    "ValidMatchedTaxon"."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1512 1551
    "ValidMatchedTaxon"."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
1513
    "ValidMatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
1514 1552
    "ValidMatchedTaxon"."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
1553
    "ValidMatchedTaxon"."[scrubbed_]taxonRank__@DwC__@vegpath.org",
1554
    "ValidMatchedTaxon"."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
1555
    "ValidMatchedTaxon"."[scrubbed_]genus__@DwC__@vegpath.org",
1556
    "ValidMatchedTaxon"."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
1557
    "ValidMatchedTaxon"."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
1558
    "ValidMatchedTaxon"."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
1559
    "ValidMatchedTaxon"."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
1560
    "ValidMatchedTaxon"."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
1561
    "ValidMatchedTaxon"."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
1562
    "ValidMatchedTaxon"."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
1515 1563
    "ValidMatchedTaxon"."taxonomicStatus",
1516 1564
    "ValidMatchedTaxon".accepted_morphospecies_binomial,
1517 1565
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank,
trunk/schemas/vegbien.sql
20190 20190
    taxon_match."*Accepted_name_lsid",
20191 20191
    taxon_match.is_valid_match,
20192 20192
    taxon_match.scrubbed_unique_taxon_name,
20193
    taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
20194
    taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20195
    taxon_match.matched_has_accepted,
20193 20196
    taxon_match."__accepted_{genus,specific_epithet}",
20194 20197
    taxon_match."[accepted_]genus__@DwC__@vegpath.org",
20195 20198
    taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
20197 20200
    taxon_match."__accepted_infraspecific_{rank,epithet}",
20198 20201
    taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20199 20202
    taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
20200
    taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20201
    taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
20203
    taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
20204
    taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
20205
    taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
20206
    taxon_match."[scrubbed_]genus__@DwC__@vegpath.org",
20207
    taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
20208
    taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
20209
    taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20210
    taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
20211
    taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
20212
    taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
20213
    taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"
20202 20214
   FROM taxon_match
20203 20215
  WHERE (taxon_match."*Selected" = 'true'::text);
20204 20216

  
......
20260 20272
    taxon_best_match."*Accepted_name_lsid",
20261 20273
    taxon_best_match.is_valid_match,
20262 20274
    taxon_best_match.scrubbed_unique_taxon_name,
20275
    taxon_best_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
20276
    taxon_best_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20277
    taxon_best_match.matched_has_accepted,
20263 20278
    taxon_best_match."__accepted_{genus,specific_epithet}",
20264 20279
    taxon_best_match."[accepted_]genus__@DwC__@vegpath.org",
20265 20280
    taxon_best_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
20267 20282
    taxon_best_match."__accepted_infraspecific_{rank,epithet}",
20268 20283
    taxon_best_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20269 20284
    taxon_best_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
20270
    taxon_best_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20271 20285
    taxon_best_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
20286
    taxon_best_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
20287
    taxon_best_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
20288
    taxon_best_match."[scrubbed_]genus__@DwC__@vegpath.org",
20289
    taxon_best_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
20290
    taxon_best_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
20291
    taxon_best_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20292
    taxon_best_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
20293
    taxon_best_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
20294
    taxon_best_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
20295
    taxon_best_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
20272 20296
    map_taxonomic_status(taxon_best_match."*Taxonomic_status", taxon_best_match."*Accepted_name") AS "taxonomicStatus",
20273 20297
        CASE
20274 20298
            WHEN (taxon_best_match."*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, taxon_best_match."*Accepted_name_family", taxon_best_match."*Unmatched_terms")
......
20335 20359
    "MatchedTaxon"."*Accepted_name_lsid",
20336 20360
    "MatchedTaxon".is_valid_match,
20337 20361
    "MatchedTaxon".scrubbed_unique_taxon_name,
20362
    "MatchedTaxon"."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
20363
    "MatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20364
    "MatchedTaxon".matched_has_accepted,
20338 20365
    "MatchedTaxon"."__accepted_{genus,specific_epithet}",
20339 20366
    "MatchedTaxon"."[accepted_]genus__@DwC__@vegpath.org",
20340 20367
    "MatchedTaxon"."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
20342 20369
    "MatchedTaxon"."__accepted_infraspecific_{rank,epithet}",
20343 20370
    "MatchedTaxon"."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20344 20371
    "MatchedTaxon"."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
20345
    "MatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20346 20372
    "MatchedTaxon"."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
20373
    "MatchedTaxon"."[scrubbed_]taxonRank__@DwC__@vegpath.org",
20374
    "MatchedTaxon"."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
20375
    "MatchedTaxon"."[scrubbed_]genus__@DwC__@vegpath.org",
20376
    "MatchedTaxon"."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
20377
    "MatchedTaxon"."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
20378
    "MatchedTaxon"."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20379
    "MatchedTaxon"."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
20380
    "MatchedTaxon"."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
20381
    "MatchedTaxon"."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
20382
    "MatchedTaxon"."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
20347 20383
    "MatchedTaxon"."taxonomicStatus",
20348 20384
    "MatchedTaxon".accepted_morphospecies_binomial
20349 20385
   FROM "MatchedTaxon"
......
20615 20651
    "ValidMatchedTaxon"."*Warnings",
20616 20652
    "ValidMatchedTaxon"."*Accepted_name_lsid",
20617 20653
    "ValidMatchedTaxon".is_valid_match,
20654
    "ValidMatchedTaxon"."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
20655
    "ValidMatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20656
    "ValidMatchedTaxon".matched_has_accepted,
20618 20657
    "ValidMatchedTaxon"."__accepted_{genus,specific_epithet}",
20619 20658
    "ValidMatchedTaxon"."[accepted_]genus__@DwC__@vegpath.org",
20620 20659
    "ValidMatchedTaxon"."[accepted_]specificEpithet__@DwC__@vegpath.org",
......
20622 20661
    "ValidMatchedTaxon"."__accepted_infraspecific_{rank,epithet}",
20623 20662
    "ValidMatchedTaxon"."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20624 20663
    "ValidMatchedTaxon"."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
20625
    "ValidMatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
20626 20664
    "ValidMatchedTaxon"."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
20665
    "ValidMatchedTaxon"."[scrubbed_]taxonRank__@DwC__@vegpath.org",
20666
    "ValidMatchedTaxon"."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
20667
    "ValidMatchedTaxon"."[scrubbed_]genus__@DwC__@vegpath.org",
20668
    "ValidMatchedTaxon"."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
20669
    "ValidMatchedTaxon"."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
20670
    "ValidMatchedTaxon"."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
20671
    "ValidMatchedTaxon"."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
20672
    "ValidMatchedTaxon"."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
20673
    "ValidMatchedTaxon"."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
20674
    "ValidMatchedTaxon"."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
20627 20675
    "ValidMatchedTaxon"."taxonomicStatus",
20628 20676
    "ValidMatchedTaxon".accepted_morphospecies_binomial,
20629 20677
    "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank,

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