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root/trunk/inputs/test_taxonomic_names @ 14318

Name Size Revision Age Author Comment
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  Taxon 13113 over 10 years Aaron Marcuse-Kubitza fix: inputs/test_taxonomic_names/Taxon/map.csv:...
  _scrub 14318 over 10 years Aaron Marcuse-Kubitza fix: inputs/.TNRS/schema.sql: taxon_match: adde...
  logs 10169 over 11 years Aaron Marcuse-Kubitza inputs/*/logs: updated svn:ignore
  verify 13401 over 10 years Aaron Marcuse-Kubitza inputs/input.Makefile: add: verify/: also svn:i...
Makefile 27 Bytes 10177 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
README.TXT 1.13 KB 5217 about 12 years Aaron Marcuse-Kubitza Added inputs/test_taxonomic_names/README.TXT wi...
import_order.txt 13 Bytes 10109 over 11 years Aaron Marcuse-Kubitza empty inputs/*/import_order.txt: added subdirs ...
run 87 Bytes 10260 over 11 years Aaron Marcuse-Kubitza inputs/*/ which do not contain any explicit col...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
test_scrub 937 Bytes 10788 over 11 years Aaron Marcuse-Kubitza inputs/test_taxonomic_names/test_scrub: added s...
  • svn:ignore: *

Latest revisions

# Date Author Comment
14318 07/22/2014 04:12 AM Aaron Marcuse-Kubitza

fix: inputs/.TNRS/schema.sql: taxon_match: added derived column "Accepted_family__@TNRS__@vegpath.org", which is needed because "*Accepted_name_family" isn't always populated
14310 07/22/2014 03:12 AM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: reordered derived columns in dependency order
14279 07/21/2014 04:34 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: taxon_match: put matched-taxon derived columns before accepted-taxon derived columns
13870 06/26/2014 04:58 AM Aaron Marcuse-Kubitza

inputs/.TNRS/data.sql: refreshed
13867 06/26/2014 04:28 AM Aaron Marcuse-Kubitza

inputs/.TNRS/data.sql: refreshed
13853 06/25/2014 04:28 PM Aaron Marcuse-Kubitza

inputs/.TNRS/data.sql: refreshed
13591 06/02/2014 04:50 AM Aaron Marcuse-Kubitza

lib/tnrs.py: switched to downloading all matches per name, as is needed to implement #917. note that this will break the parts of the schema that use the tnrs table, until Brad's match-picking algorithm can be implemented, but this tradeoff is necessary to be able to begin scrubbing sooner (Martha; wiki.vegpath.org/2014-05-29_conference_call#TNRS)
13590 06/02/2014 04:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: tnrs_input_name: don't scrub accepted names, as using multiple matches per name no longer provides a single accepted name to scrub. instead, the Accepted_* fields can be whitespace-split to generate the same columns that would have been generated by the scrubbing (and without the overhead of the extra TNRS call).
13579 05/31/2014 10:28 PM Aaron Marcuse-Kubitza

inputs/.TNRS/schema.sql: tnrs: populate match_num
13574 05/31/2014 08:11 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/*: updated to TNRS schema

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