Revision 1452
Added by Aaron Marcuse-Kubitza over 12 years ago
| mappings/DwC2.ci-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order |
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| 2 |
CoordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
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| 3 |
coordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
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| 4 |
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
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| 5 |
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
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| 6 |
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
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| 7 |
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
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| 8 |
County,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
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| 9 |
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
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| 10 |
StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65 |
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| 11 |
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65 |
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| 12 |
Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
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| 13 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
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| 14 |
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
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| 15 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
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| 16 |
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
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| 17 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
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| 18 |
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
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| 19 |
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
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| 20 |
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
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| 21 |
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
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| 22 |
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
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| 23 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
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| 24 |
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
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| 25 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
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| 26 |
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
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| 27 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
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| 28 |
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
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| 29 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
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| 30 |
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
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| 31 |
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
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| 32 |
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
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| 33 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
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| 34 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
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| 35 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
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| 36 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
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| 37 |
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
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| 38 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120 |
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| 39 |
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120 |
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| 40 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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| 41 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
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| 42 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
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| 43 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
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| 44 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
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| 45 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
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| 46 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
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| 47 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
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| 48 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
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| 49 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
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| 50 |
Genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
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| 51 |
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
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| 52 |
Family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146 |
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| 53 |
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146 |
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| 54 |
Order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145 |
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| 55 |
order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145 |
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| 56 |
Class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144 |
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| 57 |
class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144 |
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| 58 |
Phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143 |
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| 59 |
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143 |
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| 60 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
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| 61 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
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| 62 |
RecordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
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| 63 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
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| 64 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
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| 65 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
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| 66 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
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| 67 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
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| 68 |
FieldNotes,/description/_merge/1,, |
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| 69 |
fieldNotes,/description/_merge/1,, |
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| 70 |
TaxonRemarks,/description/_merge/2,,158 |
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| 71 |
taxonRemarks,/description/_merge/2,,158 |
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| 72 |
CatalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
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| 73 |
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
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| 74 |
OccurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 75 |
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
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| 76 |
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
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| 77 |
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
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| 78 |
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
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| 79 |
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
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| 80 |
FieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
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| 81 |
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
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| 82 |
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8 |
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| 83 |
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8 |
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| 84 |
AcceptedNameUsage,,,135 |
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| 85 |
AcceptedNameUsageID,,,128 |
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| 86 |
AssociatedMedia,,,36 |
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| 87 |
AssociatedOccurrences,,,38 |
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| 88 |
AssociatedReferences,,,37 |
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| 89 |
AssociatedSequences,,,39 |
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| 90 |
AssociatedTaxa,,,40 |
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| 91 |
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15 |
|
| 92 |
Bed,,,117 |
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| 93 |
Behavior,,,29 |
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| 94 |
Continent,,Brad: OMIT,59 |
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| 95 |
CountryCode,,,64 |
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| 96 |
DataGeneralizations,,,17 |
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| 97 |
DatasetID,,,10 |
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| 98 |
DatasetName,,,13 |
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| 99 |
Day,,Brad: OMIT,50 |
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| 100 |
Dcterms:accessRights,,,5 |
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| 101 |
Dcterms:bibliographicCitation,,,6 |
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| 102 |
Dcterms:language,,,2 |
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| 103 |
Dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
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| 104 |
Dcterms:references,,,7 |
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| 105 |
Dcterms:rights,,,3 |
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| 106 |
Dcterms:rightsHolder,,,4 |
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| 107 |
Dcterms:type,,,0 |
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| 108 |
Disposition,,,33 |
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| 109 |
DynamicProperties,,,18 |
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| 110 |
EarliestAgeOrLowestStage,,,109 |
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| 111 |
EarliestEonOrLowestEonothem,,,101 |
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| 112 |
EarliestEpochOrLowestSeries,,,107 |
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| 113 |
EarliestEraOrLowestErathem,,,103 |
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| 114 |
EarliestPeriodOrLowestSystem,,,105 |
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| 115 |
EndDayOfYear,,,47 |
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| 116 |
EstablishmentMeans,,,30 |
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| 117 |
EventID,,,41 |
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| 118 |
EventRemarks,,,55 |
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| 119 |
EventTime,,Brad: OMIT,45 |
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| 120 |
FootprintSRS,,,92 |
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| 121 |
FootprintSpatialFit,,,93 |
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| 122 |
Formation,,,115 |
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| 123 |
GeodeticDatum,,,87 |
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| 124 |
GeologicalContextID,,,100 |
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| 125 |
GeoreferenceProtocol,,,96 |
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| 126 |
GeoreferenceRemarks,,,99 |
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| 127 |
GeoreferenceSources,,,97 |
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| 128 |
GeoreferenceVerificationStatus,,,98 |
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| 129 |
GeoreferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94 |
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| 130 |
GeoreferencedDate,,,95 |
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| 131 |
Group,,,114 |
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| 132 |
HigherClassification,,,141 |
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| 133 |
HigherGeography,,,58 |
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| 134 |
HigherGeographyID,,,57 |
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| 135 |
HighestBiostratigraphicZone,,,112 |
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| 136 |
IdentificationID,,,118 |
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| 137 |
IdentificationQualifier,,,124 |
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| 138 |
IdentificationReferences,,,121 |
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| 139 |
IdentificationRemarks,,,123 |
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| 140 |
IdentificationVerificationStatus,,,122 |
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| 141 |
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25 |
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| 142 |
IndividualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
|
| 143 |
InformationWithheld,,,16 |
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| 144 |
InstitutionCode,,, |
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| 145 |
Island,,,62 |
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| 146 |
IslandGroup,,,61 |
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| 147 |
LatestAgeOrHighestStage,,,110 |
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| 148 |
LatestEonOrHighestEonothem,,,102 |
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| 149 |
LatestEpochOrHighestSeries,,,108 |
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| 150 |
LatestEraOrHighestErathem,,,104 |
|
| 151 |
LatestPeriodOrHighestSystem,,,106 |
|
| 152 |
LifeStage,,,27 |
|
| 153 |
LithostratigraphicTerms,,,113 |
|
| 154 |
LocationAccordingTo,,,78 |
|
| 155 |
LocationID,,,56 |
|
| 156 |
LocationRemarks,,,79 |
|
| 157 |
LowestBiostratigraphicZone,,,111 |
|
| 158 |
MaximumDistanceAboveSurfaceInMeters,,,77 |
|
| 159 |
MeasurementAccuracy,,,169 |
|
| 160 |
MeasurementDeterminedBy,,,172 |
|
| 161 |
MeasurementDeterminedDate,,,171 |
|
| 162 |
MeasurementID,,,166 |
|
| 163 |
MeasurementMethod,,,173 |
|
| 164 |
MeasurementRemarks,,,174 |
|
| 165 |
MeasurementType,,,167 |
|
| 166 |
MeasurementUnit,,,170 |
|
| 167 |
MeasurementValue,,,168 |
|
| 168 |
Member,,,116 |
|
| 169 |
MinimumDistanceAboveSurfaceInMeters,,,76 |
|
| 170 |
Month,,,49 |
|
| 171 |
Municipality,,,67 |
|
| 172 |
NameAccordingTo,,,138 |
|
| 173 |
NameAccordingToID,,,131 |
|
| 174 |
NamePublishedIn,,,139 |
|
| 175 |
NamePublishedInID,,,132 |
|
| 176 |
NamePublishedInYear,,,140 |
|
| 177 |
NomenclaturalCode,,,155 |
|
| 178 |
NomenclaturalStatus,,,157 |
|
| 179 |
OccurrenceRemarks,,,21 |
|
| 180 |
OccurrenceStatus,,,31 |
|
| 181 |
OriginalNameUsage,,,137 |
|
| 182 |
OriginalNameUsageID,,,130 |
|
| 183 |
OtherCatalogNumbers,,,34 |
|
| 184 |
OwnerInstitutionCode,,,14 |
|
| 185 |
ParentNameUsage,,,136 |
|
| 186 |
ParentNameUsageID,,,129 |
|
| 187 |
PointRadiusSpatialFit,,,90 |
|
| 188 |
Preparations,,Brad: OMIT,32 |
|
| 189 |
PreviousIdentifications,,Brad: OMIT,35 |
|
| 190 |
RelatedResourceID,,Brad: OMIT,161 |
|
| 191 |
RelationshipAccordingTo,,,163 |
|
| 192 |
RelationshipEstablishedDate,,,164 |
|
| 193 |
RelationshipOfResource,,Brad: OMIT,162 |
|
| 194 |
RelationshipRemarks,,,165 |
|
| 195 |
ReproductiveCondition,,,28 |
|
| 196 |
ResourceID,,,160 |
|
| 197 |
ResourceRelationshipID,,,159 |
|
| 198 |
SamplingEffort,,,43 |
|
| 199 |
SamplingProtocol,,,42 |
|
| 200 |
ScientificNameID,,,127 |
|
| 201 |
StartDayOfYear,,,46 |
|
| 202 |
Subgenus,,,148 |
|
| 203 |
TaxonConceptID,,,133 |
|
| 204 |
TaxonID,,,126 |
|
| 205 |
TaxonRank,,,151 |
|
| 206 |
TaxonomicStatus,,,156 |
|
| 207 |
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125 |
|
| 208 |
VerbatimCoordinateSystem,,,83 |
|
| 209 |
VerbatimCoordinates,,,80 |
|
| 210 |
VerbatimDepth,,,73 |
|
| 211 |
VerbatimElevation,,,70 |
|
| 212 |
VerbatimEventDate,,,51 |
|
| 213 |
VerbatimSRS,,,84 |
|
| 214 |
VerbatimTaxonRank,,,152 |
|
| 215 |
VernacularName,,,154 |
|
| 216 |
WaterBody,,,60 |
|
| 217 |
Year,,,48 |
|
| 218 |
acceptedNameUsage,,,135 |
|
| 219 |
acceptedNameUsageID,,,128 |
|
| 220 |
associatedMedia,,,36 |
|
| 221 |
associatedOccurrences,,,38 |
|
| 222 |
associatedReferences,,,37 |
|
| 223 |
associatedSequences,,,39 |
|
| 224 |
associatedTaxa,,,40 |
|
| 225 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15 |
|
| 226 |
bed,,,117 |
|
| 227 |
behavior,,,29 |
|
| 228 |
continent,,Brad: OMIT,59 |
|
| 229 |
countryCode,,,64 |
|
| 230 |
dataGeneralizations,,,17 |
|
| 231 |
datasetID,,,10 |
|
| 232 |
datasetName,,,13 |
|
| 233 |
day,,Brad: OMIT,50 |
|
| 234 |
dcterms:accessRights,,,5 |
|
| 235 |
dcterms:bibliographicCitation,,,6 |
|
| 236 |
dcterms:language,,,2 |
|
| 237 |
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
|
| 238 |
dcterms:references,,,7 |
|
| 239 |
dcterms:rights,,,3 |
|
| 240 |
dcterms:rightsHolder,,,4 |
|
| 241 |
dcterms:type,,,0 |
|
| 242 |
disposition,,,33 |
|
| 243 |
dynamicProperties,,,18 |
|
| 244 |
earliestAgeOrLowestStage,,,109 |
|
| 245 |
earliestEonOrLowestEonothem,,,101 |
|
| 246 |
earliestEpochOrLowestSeries,,,107 |
|
| 247 |
earliestEraOrLowestErathem,,,103 |
|
| 248 |
earliestPeriodOrLowestSystem,,,105 |
|
| 249 |
endDayOfYear,,,47 |
|
| 250 |
establishmentMeans,,,30 |
|
| 251 |
eventID,,,41 |
|
| 252 |
eventRemarks,,,55 |
|
| 253 |
eventTime,,Brad: OMIT,45 |
|
| 254 |
footprintSRS,,,92 |
|
| 255 |
footprintSpatialFit,,,93 |
|
| 256 |
formation,,,115 |
|
| 257 |
geodeticDatum,,,87 |
|
| 258 |
geologicalContextID,,,100 |
|
| 259 |
georeferenceProtocol,,,96 |
|
| 260 |
georeferenceRemarks,,,99 |
|
| 261 |
georeferenceSources,,,97 |
|
| 262 |
georeferenceVerificationStatus,,,98 |
|
| 263 |
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94 |
|
| 264 |
georeferencedDate,,,95 |
|
| 265 |
group,,,114 |
|
| 266 |
higherClassification,,,141 |
|
| 267 |
higherGeography,,,58 |
|
| 268 |
higherGeographyID,,,57 |
|
| 269 |
highestBiostratigraphicZone,,,112 |
|
| 270 |
identificationID,,,118 |
|
| 271 |
identificationQualifier,,,124 |
|
| 272 |
identificationReferences,,,121 |
|
| 273 |
identificationRemarks,,,123 |
|
| 274 |
identificationVerificationStatus,,,122 |
|
| 275 |
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25 |
|
| 276 |
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
|
| 277 |
informationWithheld,,,16 |
|
| 278 |
institutionCode,,, |
|
| 279 |
island,,,62 |
|
| 280 |
islandGroup,,,61 |
|
| 281 |
latestAgeOrHighestStage,,,110 |
|
| 282 |
latestEonOrHighestEonothem,,,102 |
|
| 283 |
latestEpochOrHighestSeries,,,108 |
|
| 284 |
latestEraOrHighestErathem,,,104 |
|
| 285 |
latestPeriodOrHighestSystem,,,106 |
|
| 286 |
lifeStage,,,27 |
|
| 287 |
lithostratigraphicTerms,,,113 |
|
| 288 |
locationAccordingTo,,,78 |
|
| 289 |
locationID,,,56 |
|
| 290 |
locationRemarks,,,79 |
|
| 291 |
lowestBiostratigraphicZone,,,111 |
|
| 292 |
maximumDistanceAboveSurfaceInMeters,,,77 |
|
| 293 |
measurementAccuracy,,,169 |
|
| 294 |
measurementDeterminedBy,,,172 |
|
| 295 |
measurementDeterminedDate,,,171 |
|
| 296 |
measurementID,,,166 |
|
| 297 |
measurementMethod,,,173 |
|
| 298 |
measurementRemarks,,,174 |
|
| 299 |
measurementType,,,167 |
|
| 300 |
measurementUnit,,,170 |
|
| 301 |
measurementValue,,,168 |
|
| 302 |
member,,,116 |
|
| 303 |
minimumDistanceAboveSurfaceInMeters,,,76 |
|
| 304 |
month,,,49 |
|
| 305 |
municipality,,,67 |
|
| 306 |
nameAccordingTo,,,138 |
|
| 307 |
nameAccordingToID,,,131 |
|
| 308 |
namePublishedIn,,,139 |
|
| 309 |
namePublishedInID,,,132 |
|
| 310 |
namePublishedInYear,,,140 |
|
| 311 |
nomenclaturalCode,,,155 |
|
| 312 |
nomenclaturalStatus,,,157 |
|
| 313 |
occurrenceRemarks,,,21 |
|
| 314 |
occurrenceStatus,,,31 |
|
| 315 |
originalNameUsage,,,137 |
|
| 316 |
originalNameUsageID,,,130 |
|
| 317 |
otherCatalogNumbers,,,34 |
|
| 318 |
ownerInstitutionCode,,,14 |
|
| 319 |
parentNameUsage,,,136 |
|
| 320 |
parentNameUsageID,,,129 |
|
| 321 |
pointRadiusSpatialFit,,,90 |
|
| 322 |
preparations,,Brad: OMIT,32 |
|
| 323 |
previousIdentifications,,Brad: OMIT,35 |
|
| 324 |
relatedResourceID,,Brad: OMIT,161 |
|
| 325 |
relationshipAccordingTo,,,163 |
|
| 326 |
relationshipEstablishedDate,,,164 |
|
| 327 |
relationshipOfResource,,Brad: OMIT,162 |
|
| 328 |
relationshipRemarks,,,165 |
|
| 329 |
reproductiveCondition,,,28 |
|
| 330 |
resourceID,,,160 |
|
| 331 |
resourceRelationshipID,,,159 |
|
| 332 |
samplingEffort,,,43 |
|
| 333 |
samplingProtocol,,,42 |
|
| 334 |
scientificNameID,,,127 |
|
| 335 |
startDayOfYear,,,46 |
|
| 336 |
subgenus,,,148 |
|
| 337 |
taxonConceptID,,,133 |
|
| 338 |
taxonID,,,126 |
|
| 339 |
taxonRank,,,151 |
|
| 340 |
taxonomicStatus,,,156 |
|
| 341 |
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125 |
|
| 342 |
verbatimCoordinateSystem,,,83 |
|
| 343 |
verbatimCoordinates,,,80 |
|
| 344 |
verbatimDepth,,,73 |
|
| 345 |
verbatimElevation,,,70 |
|
| 346 |
verbatimEventDate,,,51 |
|
| 347 |
verbatimSRS,,,84 |
|
| 348 |
verbatimTaxonRank,,,152 |
|
| 349 |
vernacularName,,,154 |
|
| 350 |
waterBody,,,60 |
|
| 351 |
year,,,48 |
|
| mappings/DwC.self.specimens.csv | ||
|---|---|---|
| 5 | 5 |
coordinatePrecision,coordinatePrecision |
| 6 | 6 |
BoundingBox,BoundingBox |
| 7 | 7 |
FootprintWKT,FootprintWKT |
| 8 |
boundingBox,boundingBox |
|
| 8 | 9 |
footprintWKT,footprintWKT |
| 9 | 10 |
County,County |
| 10 | 11 |
county,county |
| ... | ... | |
| 20 | 21 |
habitat,habitat |
| 21 | 22 |
MinimumElevation,MinimumElevation |
| 22 | 23 |
MinimumElevationInMeters,MinimumElevationInMeters |
| 24 |
minimumElevation,minimumElevation |
|
| 23 | 25 |
minimumElevationInMeters,minimumElevationInMeters |
| 24 | 26 |
MaximumElevation,MaximumElevation |
| 25 | 27 |
MaximumElevationInMeters,MaximumElevationInMeters |
| 28 |
maximumElevation,maximumElevation |
|
| 26 | 29 |
maximumElevationInMeters,maximumElevationInMeters |
| 27 | 30 |
DecimalLatitude,DecimalLatitude |
| 28 | 31 |
decimalLatitude,decimalLatitude |
| 29 | 32 |
Latitude,Latitude |
| 30 | 33 |
VerbatimLatitude,VerbatimLatitude |
| 34 |
latitude,latitude |
|
| 31 | 35 |
verbatimLatitude,verbatimLatitude |
| 32 | 36 |
DecimalLongitude,DecimalLongitude |
| 33 | 37 |
decimalLongitude,decimalLongitude |
| 34 | 38 |
Longitude,Longitude |
| 35 | 39 |
VerbatimLongitude,VerbatimLongitude |
| 40 |
longitude,longitude |
|
| 36 | 41 |
verbatimLongitude,verbatimLongitude |
| 37 | 42 |
MaximumDepth,MaximumDepth |
| 38 | 43 |
MaximumDepthInMeters,MaximumDepthInMeters |
| 44 |
maximumDepth,maximumDepth |
|
| 39 | 45 |
maximumDepthInMeters,maximumDepthInMeters |
| 40 | 46 |
MinimumDepth,MinimumDepth |
| 41 | 47 |
MinimumDepthInMeters,MinimumDepthInMeters |
| 48 |
minimumDepth,minimumDepth |
|
| 42 | 49 |
minimumDepthInMeters,minimumDepthInMeters |
| 43 |
EventDate,EventDate
|
|
| 50 |
EventDate/_alt,EventDate/_alt
|
|
| 44 | 51 |
eventDate/_alt,eventDate/_alt |
| 45 | 52 |
DayCollected,DayCollected |
| 53 |
dayCollected,dayCollected |
|
| 46 | 54 |
MonthCollected,MonthCollected |
| 55 |
monthCollected,monthCollected |
|
| 47 | 56 |
YearCollected,YearCollected |
| 57 |
yearCollected,yearCollected |
|
| 58 |
EventDate,EventDate |
|
| 48 | 59 |
eventDate,eventDate |
| 49 | 60 |
CollectedDate,CollectedDate |
| 50 |
DateIdentified,DateIdentified |
|
| 61 |
collectedDate,collectedDate |
|
| 62 |
DateIdentified/_alt,DateIdentified/_alt |
|
| 51 | 63 |
dateIdentified/_alt,dateIdentified/_alt |
| 52 | 64 |
DayIdentified,DayIdentified |
| 65 |
dayIdentified,dayIdentified |
|
| 53 | 66 |
MonthIdentified,MonthIdentified |
| 67 |
monthIdentified,monthIdentified |
|
| 54 | 68 |
YearIdentified,YearIdentified |
| 69 |
yearIdentified,yearIdentified |
|
| 70 |
DateIdentified,DateIdentified |
|
| 55 | 71 |
dateIdentified,dateIdentified |
| 56 | 72 |
IdentifiedDate,IdentifiedDate |
| 73 |
identifiedDate,identifiedDate |
|
| 57 | 74 |
IdentifiedBy,IdentifiedBy |
| 58 | 75 |
identifiedBy,identifiedBy |
| 59 | 76 |
ScientificName,ScientificName |
| 60 | 77 |
scientificName,scientificName |
| 61 | 78 |
ScientificNameAuthor,ScientificNameAuthor |
| 62 | 79 |
ScientificNameAuthorship,ScientificNameAuthorship |
| 80 |
scientificNameAuthor,scientificNameAuthor |
|
| 63 | 81 |
scientificNameAuthorship,scientificNameAuthorship |
| 64 | 82 |
InfraspecificEpithet,InfraspecificEpithet |
| 65 | 83 |
Subspecies,Subspecies |
| 66 | 84 |
infraspecificEpithet,infraspecificEpithet |
| 85 |
subspecies,subspecies |
|
| 67 | 86 |
Species,Species |
| 68 | 87 |
SpecificEpithet,SpecificEpithet |
| 88 |
species,species |
|
| 69 | 89 |
specificEpithet,specificEpithet |
| 70 | 90 |
Genus,Genus |
| 71 | 91 |
genus,genus |
| ... | ... | |
| 81 | 101 |
kingdom,kingdom |
| 82 | 102 |
Collector,Collector |
| 83 | 103 |
RecordedBy,RecordedBy |
| 104 |
collector,collector |
|
| 84 | 105 |
recordedBy,recordedBy |
| 85 | 106 |
CollectionCode,CollectionCode |
| 86 | 107 |
collectionCode,collectionCode |
| ... | ... | |
| 89 | 110 |
FieldNotes,FieldNotes |
| 90 | 111 |
Notes,Notes |
| 91 | 112 |
fieldNotes,fieldNotes |
| 113 |
notes,notes |
|
| 92 | 114 |
Remarks,Remarks |
| 93 | 115 |
TaxonRemarks,TaxonRemarks |
| 116 |
remarks,remarks |
|
| 94 | 117 |
taxonRemarks,taxonRemarks |
| 95 | 118 |
CatalogNumber,CatalogNumber |
| 96 | 119 |
catalogNumber,catalogNumber |
| 97 | 120 |
GlobalUniqueIdentifier,GlobalUniqueIdentifier |
| 98 | 121 |
OccurrenceID,OccurrenceID |
| 122 |
globalUniqueIdentifier,globalUniqueIdentifier |
|
| 99 | 123 |
occurrenceID,occurrenceID |
| 100 | 124 |
CollectorNumber,CollectorNumber |
| 101 | 125 |
RecordNumber,RecordNumber |
| 126 |
collectorNumber,collectorNumber |
|
| 102 | 127 |
recordNumber,recordNumber |
| 103 | 128 |
CollectionID,CollectionID |
| 104 | 129 |
collectionID,collectionID |
| ... | ... | |
| 259 | 284 |
bed,bed |
| 260 | 285 |
behavior,behavior |
| 261 | 286 |
continent,continent |
| 287 |
continentOcean,continentOcean |
|
| 262 | 288 |
countryCode,countryCode |
| 263 | 289 |
dataGeneralizations,dataGeneralizations |
| 264 | 290 |
datasetID,datasetID |
| 265 | 291 |
datasetName,datasetName |
| 292 |
dateLastModified,dateLastModified |
|
| 266 | 293 |
day,day |
| 267 | 294 |
dcterms:accessRights,dcterms:accessRights |
| 268 | 295 |
dcterms:bibliographicCitation,dcterms:bibliographicCitation |
| ... | ... | |
| 311 | 338 |
institutionCode,institutionCode |
| 312 | 339 |
island,island |
| 313 | 340 |
islandGroup,islandGroup |
| 341 |
julianDay,julianDay |
|
| 314 | 342 |
latestAgeOrHighestStage,latestAgeOrHighestStage |
| 315 | 343 |
latestEonOrHighestEonothem,latestEonOrHighestEonothem |
| 316 | 344 |
latestEpochOrHighestSeries,latestEpochOrHighestSeries |
| ... | ... | |
| 352 | 380 |
parentNameUsage,parentNameUsage |
| 353 | 381 |
parentNameUsageID,parentNameUsageID |
| 354 | 382 |
pointRadiusSpatialFit,pointRadiusSpatialFit |
| 383 |
preparationType,preparationType |
|
| 355 | 384 |
preparations,preparations |
| 385 |
previousCatalogNumber,previousCatalogNumber |
|
| 356 | 386 |
previousIdentifications,previousIdentifications |
| 387 |
relatedCatalogItem,relatedCatalogItem |
|
| 357 | 388 |
relatedResourceID,relatedResourceID |
| 358 | 389 |
relationshipAccordingTo,relationshipAccordingTo |
| 359 | 390 |
relationshipEstablishedDate,relationshipEstablishedDate |
| 360 | 391 |
relationshipOfResource,relationshipOfResource |
| 361 | 392 |
relationshipRemarks,relationshipRemarks |
| 393 |
relationshipType,relationshipType |
|
| 362 | 394 |
reproductiveCondition,reproductiveCondition |
| 363 | 395 |
resourceID,resourceID |
| 364 | 396 |
resourceRelationshipID,resourceRelationshipID |
| ... | ... | |
| 371 | 403 |
taxonID,taxonID |
| 372 | 404 |
taxonRank,taxonRank |
| 373 | 405 |
taxonomicStatus,taxonomicStatus |
| 406 |
timeOfDay,timeOfDay |
|
| 374 | 407 |
typeStatus,typeStatus |
| 375 | 408 |
verbatimCoordinateSystem,verbatimCoordinateSystem |
| 376 | 409 |
verbatimCoordinates,verbatimCoordinates |
| mappings/DwC-VegBIEN.specimens.no_empty.csv | ||
|---|---|---|
| 5 | 5 |
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
| 6 | 6 |
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| 7 | 7 |
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| 8 |
boundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
|
| 8 | 9 |
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| 9 | 10 |
County,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
| 10 | 11 |
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
| ... | ... | |
| 20 | 21 |
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 21 | 22 |
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
| 22 | 23 |
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
| 24 |
minimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
|
| 23 | 25 |
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
| 24 | 26 |
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
| 25 | 27 |
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
| 28 |
maximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
|
| 26 | 29 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
| 27 | 30 |
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 28 | 31 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 29 | 32 |
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 30 | 33 |
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 34 |
latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
|
| 31 | 35 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 32 | 36 |
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 33 | 37 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 34 | 38 |
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 35 | 39 |
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 40 |
longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
|
| 36 | 41 |
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 37 | 42 |
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 38 | 43 |
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 44 |
maximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
|
| 39 | 45 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 40 | 46 |
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 41 | 47 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 48 |
minimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
|
| 42 | 49 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 43 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
|
|
| 50 |
EventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
|
| 44 | 51 |
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 45 | 52 |
DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 53 |
dayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
|
| 46 | 54 |
MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 55 |
monthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
|
| 47 | 56 |
YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 57 |
yearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
|
| 58 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
|
| 48 | 59 |
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
| 49 | 60 |
CollectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
|
| 50 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120 |
|
| 61 |
collectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
|
|
| 62 |
DateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120 |
|
| 51 | 63 |
dateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120 |
| 52 | 64 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
| 65 |
dayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
|
| 53 | 66 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
| 67 |
monthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
|
| 54 | 68 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
| 69 |
yearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
|
| 70 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
|
| 55 | 71 |
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
| 56 | 72 |
IdentifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
| 73 |
identifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
|
| 57 | 74 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 58 | 75 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 59 | 76 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| 60 | 77 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| 61 | 78 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 62 | 79 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 80 |
scientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
|
| 63 | 81 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 64 | 82 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| 65 | 83 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| 66 | 84 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| 85 |
subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
|
| 67 | 86 |
Species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
| 68 | 87 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
| 88 |
species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
|
| 69 | 89 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
| 70 | 90 |
Genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
| 71 | 91 |
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
| ... | ... | |
| 81 | 101 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
| 82 | 102 |
Collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 83 | 103 |
RecordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 104 |
collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
|
| 84 | 105 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 85 | 106 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 86 | 107 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| ... | ... | |
| 89 | 110 |
FieldNotes,/description/_merge/1,, |
| 90 | 111 |
Notes,/description/_merge/1,, |
| 91 | 112 |
fieldNotes,/description/_merge/1,, |
| 113 |
notes,/description/_merge/1,, |
|
| 92 | 114 |
Remarks,/description/_merge/2,,158 |
| 93 | 115 |
TaxonRemarks,/description/_merge/2,,158 |
| 116 |
remarks,/description/_merge/2,,158 |
|
| 94 | 117 |
taxonRemarks,/description/_merge/2,,158 |
| 95 | 118 |
CatalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 96 | 119 |
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 97 | 120 |
GlobalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 98 | 121 |
OccurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 122 |
globalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 99 | 123 |
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 100 | 124 |
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 101 | 125 |
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 126 |
collectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 102 | 127 |
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 103 | 128 |
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
| 104 | 129 |
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
| mappings/for_review/DwC1-DwC2.specimens.csv | ||
|---|---|---|
| 1 | 1 |
"DwC1::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments |
| 2 |
ContinentOcean,continent,
|
|
| 2 |
continentOcean,continent,
|
|
| 3 | 3 |
dateIdentified/_alt,dateIdentified/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
| 4 |
DayIdentified,dateIdentified/_alt/1/_date/day/_nullIf/value,
|
|
| 5 |
MonthIdentified,dateIdentified/_alt/1/_date/month/_nullIf/value,
|
|
| 6 |
YearIdentified,dateIdentified/_alt/1/_date/year/_nullIf/value,
|
|
| 4 |
dayIdentified,dateIdentified/_alt/1/_date/day/_nullIf/value,
|
|
| 5 |
monthIdentified,dateIdentified/_alt/1/_date/month/_nullIf/value,
|
|
| 6 |
yearIdentified,dateIdentified/_alt/1/_date/year/_nullIf/value,
|
|
| 7 | 7 |
dateIdentified,dateIdentified/_alt/2, |
| 8 |
IdentifiedDate,dateIdentified/_alt/3,
|
|
| 9 |
JulianDay,day,
|
|
| 10 |
DateLastModified,dcterms:modified,
|
|
| 8 |
identifiedDate,dateIdentified/_alt/3,
|
|
| 9 |
julianDay,day,
|
|
| 10 |
dateLastModified,dcterms:modified,
|
|
| 11 | 11 |
eventDate/_alt,eventDate/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping |
| 12 |
DayCollected,eventDate/_alt/1/_date/day/_nullIf/value,
|
|
| 13 |
MonthCollected,eventDate/_alt/1/_date/month/_nullIf/value,
|
|
| 14 |
YearCollected,eventDate/_alt/1/_date/year/_nullIf/value,
|
|
| 12 |
dayCollected,eventDate/_alt/1/_date/day/_nullIf/value,
|
|
| 13 |
monthCollected,eventDate/_alt/1/_date/month/_nullIf/value,
|
|
| 14 |
yearCollected,eventDate/_alt/1/_date/year/_nullIf/value,
|
|
| 15 | 15 |
eventDate,eventDate/_alt/2, |
| 16 |
CollectedDate,eventDate/_alt/3, |
|
| 17 |
TimeOfDay,eventTime, |
|
| 18 |
Notes,fieldNotes, |
|
| 19 |
BoundingBox,footprintWKT, |
|
| 20 |
Subspecies,infraspecificEpithet, |
|
| 21 |
MaximumDepth,maximumDepthInMeters, |
|
| 22 |
MaximumElevation,maximumElevationInMeters, |
|
| 23 |
MinimumDepth,minimumDepthInMeters, |
|
| 24 |
MinimumElevation,minimumElevationInMeters, |
|
| 25 |
GlobalUniqueIdentifier,occurrenceID, |
|
| 26 |
PreparationType,preparations, |
|
| 27 |
PreviousCatalogNumber,previousIdentifications,? |
|
| 28 |
CollectorNumber,recordNumber, |
|
| 29 |
Collector,recordedBy, |
|
| 30 |
RelatedCatalogItem,relatedResourceID, |
|
| 31 |
RelationshipType,relationshipOfResource, |
|
| 32 |
ScientificNameAuthor,scientificNameAuthorship, |
|
| 33 |
Species,specificEpithet, |
|
| 34 |
Remarks,taxonRemarks, |
|
| 35 |
Latitude,verbatimLatitude, |
|
| 36 |
Longitude,verbatimLongitude, |
|
| 16 |
collectedDate,eventDate/_alt/3, |
|
| 17 |
timeOfDay,eventTime, |
|
| 18 |
notes,fieldNotes, |
|
| 19 |
boundingBox,footprintWKT, |
|
| 20 |
subspecies,infraspecificEpithet, |
|
| 21 |
maximumDepth,maximumDepthInMeters, |
|
| 22 |
maximumElevation,maximumElevationInMeters, |
|
| 23 |
minimumDepth,minimumDepthInMeters, |
|
| 24 |
minimumElevation,minimumElevationInMeters, |
|
| 25 |
globalUniqueIdentifier,occurrenceID, |
|
| 26 |
preparationType,preparations, |
|
| 27 |
previousCatalogNumber,previousIdentifications,? |
|
| 28 |
collectorNumber,recordNumber, |
|
| 29 |
collector,recordedBy, |
|
| 30 |
relatedCatalogItem,relatedResourceID, |
|
| 31 |
relationshipType,relationshipOfResource, |
|
| 32 |
scientificNameAuthor,scientificNameAuthorship, |
|
| 33 |
species,specificEpithet, |
|
| 34 |
remarks,taxonRemarks, |
|
| 35 |
latitude,verbatimLatitude, |
|
| 36 |
longitude,verbatimLongitude, |
|
| mappings/DwC-VegBIEN.specimens.csv | ||
|---|---|---|
| 5 | 5 |
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
| 6 | 6 |
BoundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| 7 | 7 |
FootprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| 8 |
boundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
|
| 8 | 9 |
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
| 9 | 10 |
County,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
| 10 | 11 |
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
| ... | ... | |
| 20 | 21 |
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 21 | 22 |
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
| 22 | 23 |
MinimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
| 24 |
minimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
|
| 23 | 25 |
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
| 24 | 26 |
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
| 25 | 27 |
MaximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
| 28 |
maximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
|
| 26 | 29 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
| 27 | 30 |
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 28 | 31 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 29 | 32 |
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 30 | 33 |
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 34 |
latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
|
| 31 | 35 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 32 | 36 |
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 33 | 37 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 34 | 38 |
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 35 | 39 |
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 40 |
longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
|
| 36 | 41 |
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 37 | 42 |
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 38 | 43 |
MaximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 44 |
maximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
|
| 39 | 45 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
| 40 | 46 |
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 41 | 47 |
MinimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 48 |
minimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
|
| 42 | 49 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
| 43 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value",,44
|
|
| 50 |
EventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
|
| 44 | 51 |
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 45 | 52 |
DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 53 |
dayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
|
| 46 | 54 |
MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 55 |
monthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
|
| 47 | 56 |
YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 57 |
yearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
|
| 58 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
|
| 48 | 59 |
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
| 49 | 60 |
CollectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
|
| 50 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value,,120 |
|
| 61 |
collectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
|
|
| 62 |
DateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120 |
|
| 51 | 63 |
dateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120 |
| 52 | 64 |
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
| 65 |
dayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
|
| 53 | 66 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
| 67 |
monthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
|
| 54 | 68 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
| 69 |
yearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
|
| 70 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
|
| 55 | 71 |
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
| 56 | 72 |
IdentifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
| 73 |
identifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
|
| 57 | 74 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 58 | 75 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 59 | 76 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| 60 | 77 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| 61 | 78 |
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 62 | 79 |
ScientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 80 |
scientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
|
| 63 | 81 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
| 64 | 82 |
InfraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| 65 | 83 |
Subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| 66 | 84 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
| 85 |
subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
|
| 67 | 86 |
Species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
| 68 | 87 |
SpecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
| 88 |
species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
|
| 69 | 89 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
| 70 | 90 |
Genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
| 71 | 91 |
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
| ... | ... | |
| 81 | 101 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
| 82 | 102 |
Collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 83 | 103 |
RecordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 104 |
collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
|
| 84 | 105 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 85 | 106 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 86 | 107 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| ... | ... | |
| 89 | 110 |
FieldNotes,/description/_merge/1,, |
| 90 | 111 |
Notes,/description/_merge/1,, |
| 91 | 112 |
fieldNotes,/description/_merge/1,, |
| 113 |
notes,/description/_merge/1,, |
|
| 92 | 114 |
Remarks,/description/_merge/2,,158 |
| 93 | 115 |
TaxonRemarks,/description/_merge/2,,158 |
| 116 |
remarks,/description/_merge/2,,158 |
|
| 94 | 117 |
taxonRemarks,/description/_merge/2,,158 |
| 95 | 118 |
CatalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 96 | 119 |
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 97 | 120 |
GlobalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 98 | 121 |
OccurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 122 |
globalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 99 | 123 |
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 100 | 124 |
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 101 | 125 |
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 126 |
collectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 102 | 127 |
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 103 | 128 |
CollectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
| 104 | 129 |
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
| ... | ... | |
| 259 | 284 |
bed,,,117 |
| 260 | 285 |
behavior,,,29 |
| 261 | 286 |
continent,,Brad: OMIT,59 |
| 287 |
continentOcean,,Brad: OMIT,59 |
|
| 262 | 288 |
countryCode,,,64 |
| 263 | 289 |
dataGeneralizations,,,17 |
| 264 | 290 |
datasetID,,,10 |
| 265 | 291 |
datasetName,,,13 |
| 292 |
dateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
|
| 266 | 293 |
day,,Brad: OMIT,50 |
| 267 | 294 |
dcterms:accessRights,,,5 |
| 268 | 295 |
dcterms:bibliographicCitation,,,6 |
| ... | ... | |
| 311 | 338 |
institutionCode,,, |
| 312 | 339 |
island,,,62 |
| 313 | 340 |
islandGroup,,,61 |
| 341 |
julianDay,,Brad: OMIT,50 |
|
| 314 | 342 |
latestAgeOrHighestStage,,,110 |
| 315 | 343 |
latestEonOrHighestEonothem,,,102 |
| 316 | 344 |
latestEpochOrHighestSeries,,,108 |
| ... | ... | |
| 352 | 380 |
parentNameUsage,,,136 |
| 353 | 381 |
parentNameUsageID,,,129 |
| 354 | 382 |
pointRadiusSpatialFit,,,90 |
| 383 |
preparationType,,Brad: OMIT,32 |
|
| 355 | 384 |
preparations,,Brad: OMIT,32 |
| 385 |
previousCatalogNumber,,?; Brad: OMIT,35 |
|
| 356 | 386 |
previousIdentifications,,Brad: OMIT,35 |
| 387 |
relatedCatalogItem,,Brad: OMIT,161 |
|
| 357 | 388 |
relatedResourceID,,Brad: OMIT,161 |
| 358 | 389 |
relationshipAccordingTo,,,163 |
| 359 | 390 |
relationshipEstablishedDate,,,164 |
| 360 | 391 |
relationshipOfResource,,Brad: OMIT,162 |
| 361 | 392 |
relationshipRemarks,,,165 |
| 393 |
relationshipType,,Brad: OMIT,162 |
|
| 362 | 394 |
reproductiveCondition,,,28 |
| 363 | 395 |
resourceID,,,160 |
| 364 | 396 |
resourceRelationshipID,,,159 |
| ... | ... | |
| 371 | 403 |
taxonID,,,126 |
| 372 | 404 |
taxonRank,,,151 |
| 373 | 405 |
taxonomicStatus,,,156 |
| 406 |
timeOfDay,,Brad: OMIT,45 |
|
| 374 | 407 |
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125 |
| 375 | 408 |
verbatimCoordinateSystem,,,83 |
| 376 | 409 |
verbatimCoordinates,,,80 |
| mappings/DwC1-DwC2.specimens.csv | ||
|---|---|---|
| 1 | 1 |
"DwC1::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments |
| 2 |
ContinentOcean,continent,
|
|
| 2 |
continentOcean,continent,
|
|
| 3 | 3 |
dateIdentified/_alt,dateIdentified/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping |
| 4 |
DayIdentified,"dateIdentified/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 5 |
MonthIdentified,"dateIdentified/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 6 |
YearIdentified,"dateIdentified/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 4 |
dayIdentified,"dateIdentified/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 5 |
monthIdentified,"dateIdentified/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 6 |
yearIdentified,"dateIdentified/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 7 | 7 |
dateIdentified,dateIdentified/_alt/2, |
| 8 |
IdentifiedDate,dateIdentified/_alt/3,
|
|
| 9 |
JulianDay,day,
|
|
| 10 |
DateLastModified,dcterms:modified,
|
|
| 8 |
identifiedDate,dateIdentified/_alt/3,
|
|
| 9 |
julianDay,day,
|
|
| 10 |
dateLastModified,dcterms:modified,
|
|
| 11 | 11 |
eventDate/_alt,eventDate/_alt,Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping |
| 12 |
DayCollected,"eventDate/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 13 |
MonthCollected,"eventDate/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 14 |
YearCollected,"eventDate/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 12 |
dayCollected,"eventDate/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 13 |
monthCollected,"eventDate/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 14 |
yearCollected,"eventDate/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 15 | 15 |
eventDate,eventDate/_alt/2, |
| 16 |
CollectedDate,eventDate/_alt/3, |
|
| 17 |
TimeOfDay,eventTime, |
|
| 18 |
Notes,fieldNotes, |
|
| 19 |
BoundingBox,footprintWKT, |
|
| 20 |
Subspecies,infraspecificEpithet, |
|
| 21 |
MaximumDepth,maximumDepthInMeters, |
|
| 22 |
MaximumElevation,maximumElevationInMeters, |
|
| 23 |
MinimumDepth,minimumDepthInMeters, |
|
| 24 |
MinimumElevation,minimumElevationInMeters, |
|
| 25 |
GlobalUniqueIdentifier,occurrenceID, |
|
| 26 |
PreparationType,preparations, |
|
| 27 |
PreviousCatalogNumber,previousIdentifications,? |
|
| 28 |
CollectorNumber,recordNumber, |
|
| 29 |
Collector,recordedBy, |
|
| 30 |
RelatedCatalogItem,relatedResourceID, |
|
| 31 |
RelationshipType,relationshipOfResource, |
|
| 32 |
ScientificNameAuthor,scientificNameAuthorship, |
|
| 33 |
Species,specificEpithet, |
|
| 34 |
Remarks,taxonRemarks, |
|
| 35 |
Latitude,verbatimLatitude, |
|
| 36 |
Longitude,verbatimLongitude, |
|
| 16 |
collectedDate,eventDate/_alt/3, |
|
| 17 |
timeOfDay,eventTime, |
|
| 18 |
notes,fieldNotes, |
|
| 19 |
boundingBox,footprintWKT, |
|
| 20 |
subspecies,infraspecificEpithet, |
|
| 21 |
maximumDepth,maximumDepthInMeters, |
|
| 22 |
maximumElevation,maximumElevationInMeters, |
|
| 23 |
minimumDepth,minimumDepthInMeters, |
|
| 24 |
minimumElevation,minimumElevationInMeters, |
|
| 25 |
globalUniqueIdentifier,occurrenceID, |
|
| 26 |
preparationType,preparations, |
|
| 27 |
previousCatalogNumber,previousIdentifications,? |
|
| 28 |
collectorNumber,recordNumber, |
|
| 29 |
collector,recordedBy, |
|
| 30 |
relatedCatalogItem,relatedResourceID, |
|
| 31 |
relationshipType,relationshipOfResource, |
|
| 32 |
scientificNameAuthor,scientificNameAuthorship, |
|
| 33 |
species,specificEpithet, |
|
| 34 |
remarks,taxonRemarks, |
|
| 35 |
latitude,verbatimLatitude, |
|
| 36 |
longitude,verbatimLongitude, |
|
| mappings/Makefile | ||
|---|---|---|
| 52 | 52 |
|
| 53 | 53 |
joinMaps := |
| 54 | 54 |
|
| 55 |
DwC2.ci-VegBIEN.specimens.csv: DwC2-VegBIEN.specimens.csv |
|
| 55 |
DwC.cs-VegBIEN.specimens.csv: DwC1-DwC2.specimens.csv DwC2-VegBIEN.specimens.csv |
|
| 56 |
$(join) <$+ >$@ |
|
| 57 |
joinMaps += DwC.cs-VegBIEN.specimens.csv |
|
| 58 |
|
|
| 59 |
DwC-VegBIEN.specimens.csv: DwC.cs-VegBIEN.specimens.csv |
|
| 56 | 60 |
$(selfMap) <$<|$(bin)/ucase_first 0|$(join) $< >$@ |
| 57 |
joinMaps += DwC2.ci-VegBIEN.specimens.csv |
|
| 58 |
|
|
| 59 |
DwC-VegBIEN.specimens.csv: DwC1-DwC2.specimens.csv DwC2.ci-VegBIEN.specimens.csv |
|
| 60 |
$(join) <$+ >$@ |
|
| 61 | 61 |
joinMaps += DwC-VegBIEN.specimens.csv |
| 62 | 62 |
|
| 63 | 63 |
DwC.self.specimens.csv: DwC-VegBIEN.specimens.csv |
| mappings/DwC.cs-VegBIEN.specimens.csv | ||
|---|---|---|
| 1 |
"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",VegBIEN:/specimenreplicate,Comments,Order |
|
| 2 |
coordinateUncertaintyInMeters,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/1,,88 |
|
| 3 |
coordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/coordsaccuracy/_noCV/value/_alt/2,,89 |
|
| 4 |
boundingBox,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
|
| 5 |
footprintWKT,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/footprintgeometry_dwc,,91 |
|
| 6 |
county,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=county]/placename",,66 |
|
| 7 |
stateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=stateProvince]/placename",,65 |
|
| 8 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
|
| 9 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
|
| 10 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 11 |
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
|
| 12 |
minimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
|
| 13 |
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_rangeStart/value,elevationrange/_range/to/_alt/2/_rangeEnd/value}",,71
|
|
| 14 |
maximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
|
| 15 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to/_alt/1}",,72
|
|
| 16 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
|
| 17 |
latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
|
| 18 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
|
| 19 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
|
| 20 |
longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
|
| 21 |
verbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
|
| 22 |
maximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
|
| 23 |
maximumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/max,,75 |
|
| 24 |
minimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
|
| 25 |
minimumDepthInMeters,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min,,74 |
|
| 26 |
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
|
| 27 |
dayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
|
| 28 |
monthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
|
| 29 |
yearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
|
| 30 |
eventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
|
| 31 |
collectedDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/3",,44
|
|
| 32 |
dateIdentified/_alt,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt,Allow datasource to define custom dateIdentified mappings that don't pass through the default dateIdentified mapping,120 |
|
| 33 |
dayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
|
| 34 |
monthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
|
| 35 |
yearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
|
| 36 |
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
|
| 37 |
identifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
|
| 38 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 39 |
scientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
|
| 40 |
scientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
|
| 41 |
scientificNameAuthorship,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=authority]/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153 |
|
| 42 |
infraspecificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
|
| 43 |
subspecies,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subspecies]/plantname",,150 |
|
| 44 |
species,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
|
| 45 |
specificEpithet,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=species]/plantname",,149 |
|
| 46 |
genus,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=genus]/plantname",,147 |
|
| 47 |
family,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=family]/plantname",,146 |
|
| 48 |
order,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=order]/plantname",,145 |
|
| 49 |
class,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=class]/plantname",,144 |
|
| 50 |
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143 |
|
| 51 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
|
| 52 |
collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
|
| 53 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
|
| 54 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
|
| 55 |
sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
|
| 56 |
fieldNotes,/description/_merge/1,, |
|
| 57 |
notes,/description/_merge/1,, |
|
| 58 |
remarks,/description/_merge/2,,158 |
|
| 59 |
taxonRemarks,/description/_merge/2,,158 |
|
| 60 |
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 61 |
globalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 62 |
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 63 |
collectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 64 |
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 65 |
collectionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/2,,9 |
|
| 66 |
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
|
| 67 |
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8 |
|
| 68 |
acceptedNameUsage,,,135 |
|
| 69 |
acceptedNameUsageID,,,128 |
|
| 70 |
associatedMedia,,,36 |
|
| 71 |
associatedOccurrences,,,38 |
|
| 72 |
associatedReferences,,,37 |
|
| 73 |
associatedSequences,,,39 |
|
| 74 |
associatedTaxa,,,40 |
|
| 75 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15 |
|
| 76 |
bed,,,117 |
|
| 77 |
behavior,,,29 |
|
| 78 |
continent,,Brad: OMIT,59 |
|
| 79 |
continentOcean,,Brad: OMIT,59 |
|
| 80 |
countryCode,,,64 |
|
| 81 |
dataGeneralizations,,,17 |
|
| 82 |
datasetID,,,10 |
|
| 83 |
datasetName,,,13 |
|
| 84 |
dateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
|
| 85 |
day,,Brad: OMIT,50 |
|
| 86 |
dcterms:accessRights,,,5 |
|
| 87 |
dcterms:bibliographicCitation,,,6 |
|
| 88 |
dcterms:language,,,2 |
|
| 89 |
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
|
| 90 |
dcterms:references,,,7 |
|
| 91 |
dcterms:rights,,,3 |
|
| 92 |
dcterms:rightsHolder,,,4 |
|
| 93 |
dcterms:type,,,0 |
|
| 94 |
disposition,,,33 |
|
| 95 |
dynamicProperties,,,18 |
|
| 96 |
earliestAgeOrLowestStage,,,109 |
|
| 97 |
earliestEonOrLowestEonothem,,,101 |
|
| 98 |
earliestEpochOrLowestSeries,,,107 |
|
| 99 |
earliestEraOrLowestErathem,,,103 |
|
| 100 |
earliestPeriodOrLowestSystem,,,105 |
|
| 101 |
endDayOfYear,,,47 |
|
| 102 |
establishmentMeans,,,30 |
|
| 103 |
eventID,,,41 |
|
| 104 |
eventRemarks,,,55 |
|
| 105 |
eventTime,,Brad: OMIT,45 |
|
| 106 |
footprintSRS,,,92 |
|
| 107 |
footprintSpatialFit,,,93 |
|
| 108 |
formation,,,115 |
|
| 109 |
geodeticDatum,,,87 |
|
| 110 |
geologicalContextID,,,100 |
|
| 111 |
georeferenceProtocol,,,96 |
|
| 112 |
georeferenceRemarks,,,99 |
|
| 113 |
georeferenceSources,,,97 |
|
| 114 |
georeferenceVerificationStatus,,,98 |
|
| 115 |
georeferencedBy,,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94 |
|
| 116 |
georeferencedDate,,,95 |
|
| 117 |
group,,,114 |
|
| 118 |
higherClassification,,,141 |
|
| 119 |
higherGeography,,,58 |
|
| 120 |
higherGeographyID,,,57 |
|
| 121 |
highestBiostratigraphicZone,,,112 |
|
| 122 |
identificationID,,,118 |
|
| 123 |
identificationQualifier,,,124 |
|
| 124 |
identificationReferences,,,121 |
|
| 125 |
identificationRemarks,,,123 |
|
| 126 |
identificationVerificationStatus,,,122 |
|
| 127 |
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25 |
|
| 128 |
individualID,,"Brad: OMIT; db-specific element, not relevant to VB/VX",24 |
|
| 129 |
informationWithheld,,,16 |
|
| 130 |
institutionCode,,, |
|
| 131 |
island,,,62 |
|
| 132 |
islandGroup,,,61 |
|
| 133 |
julianDay,,Brad: OMIT,50 |
|
| 134 |
latestAgeOrHighestStage,,,110 |
|
| 135 |
latestEonOrHighestEonothem,,,102 |
|
| 136 |
latestEpochOrHighestSeries,,,108 |
|
| 137 |
latestEraOrHighestErathem,,,104 |
|
| 138 |
latestPeriodOrHighestSystem,,,106 |
|
| 139 |
lifeStage,,,27 |
|
| 140 |
lithostratigraphicTerms,,,113 |
|
| 141 |
locationAccordingTo,,,78 |
|
| 142 |
locationID,,,56 |
|
| 143 |
locationRemarks,,,79 |
|
| 144 |
lowestBiostratigraphicZone,,,111 |
|
| 145 |
maximumDistanceAboveSurfaceInMeters,,,77 |
|
| 146 |
measurementAccuracy,,,169 |
|
| 147 |
measurementDeterminedBy,,,172 |
|
| 148 |
measurementDeterminedDate,,,171 |
|
| 149 |
measurementID,,,166 |
|
| 150 |
measurementMethod,,,173 |
|
| 151 |
measurementRemarks,,,174 |
|
| 152 |
measurementType,,,167 |
|
| 153 |
measurementUnit,,,170 |
|
| 154 |
measurementValue,,,168 |
|
| 155 |
member,,,116 |
|
| 156 |
minimumDistanceAboveSurfaceInMeters,,,76 |
|
| 157 |
month,,,49 |
|
| 158 |
municipality,,,67 |
|
| 159 |
nameAccordingTo,,,138 |
|
| 160 |
nameAccordingToID,,,131 |
|
| 161 |
namePublishedIn,,,139 |
|
| 162 |
namePublishedInID,,,132 |
|
| 163 |
namePublishedInYear,,,140 |
|
| 164 |
nomenclaturalCode,,,155 |
|
| 165 |
nomenclaturalStatus,,,157 |
|
| 166 |
occurrenceRemarks,,,21 |
|
| 167 |
occurrenceStatus,,,31 |
|
| 168 |
originalNameUsage,,,137 |
|
| 169 |
originalNameUsageID,,,130 |
|
| 170 |
otherCatalogNumbers,,,34 |
|
| 171 |
ownerInstitutionCode,,,14 |
|
| 172 |
parentNameUsage,,,136 |
|
| 173 |
parentNameUsageID,,,129 |
|
| 174 |
pointRadiusSpatialFit,,,90 |
|
| 175 |
preparationType,,Brad: OMIT,32 |
|
| 176 |
preparations,,Brad: OMIT,32 |
|
| 177 |
previousCatalogNumber,,?; Brad: OMIT,35 |
|
| 178 |
previousIdentifications,,Brad: OMIT,35 |
|
| 179 |
relatedCatalogItem,,Brad: OMIT,161 |
|
| 180 |
relatedResourceID,,Brad: OMIT,161 |
|
| 181 |
relationshipAccordingTo,,,163 |
|
| 182 |
relationshipEstablishedDate,,,164 |
|
| 183 |
relationshipOfResource,,Brad: OMIT,162 |
|
| 184 |
relationshipRemarks,,,165 |
|
| 185 |
relationshipType,,Brad: OMIT,162 |
|
| 186 |
reproductiveCondition,,,28 |
|
| 187 |
resourceID,,,160 |
|
| 188 |
resourceRelationshipID,,,159 |
|
| 189 |
samplingEffort,,,43 |
|
| 190 |
samplingProtocol,,,42 |
|
| 191 |
scientificNameID,,,127 |
|
| 192 |
startDayOfYear,,,46 |
|
| 193 |
subgenus,,,148 |
|
| 194 |
taxonConceptID,,,133 |
|
| 195 |
taxonID,,,126 |
|
| 196 |
taxonRank,,,151 |
|
| 197 |
taxonomicStatus,,,156 |
|
| 198 |
timeOfDay,,Brad: OMIT,45 |
|
| 199 |
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125 |
|
| 200 |
verbatimCoordinateSystem,,,83 |
|
| 201 |
verbatimCoordinates,,,80 |
|
| 202 |
verbatimDepth,,,73 |
|
| 203 |
verbatimElevation,,,70 |
|
| 204 |
verbatimEventDate,,,51 |
|
| 205 |
verbatimSRS,,,84 |
|
| 206 |
verbatimTaxonRank,,,152 |
|
| 207 |
vernacularName,,,154 |
|
| 208 |
waterBody,,,60 |
|
| 209 |
year,,,48 |
|
Also available in: Unified diff
mappings: DwC: Generate case-insensitive map of DwC1 and DwC2 together, rather than just DwC2. DwC1-DwC2.specimens.csv: Make input columns lowercase so that case-insensitization will work properly.