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--
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-- PostgreSQL database dump
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--
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SET statement_timeout = 0;
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SET lock_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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--
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-- Name: TNRS; Type: SCHEMA; Schema: -; Owner: bien
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--
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CREATE SCHEMA "TNRS";
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ALTER SCHEMA "TNRS" OWNER TO bien;
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--
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-- Name: SCHEMA "TNRS"; Type: COMMENT; Schema: -; Owner: bien
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--
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aaronmk
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COMMENT ON SCHEMA "TNRS" IS '
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IMPORTANT: when changing this schema, you must also make the same changes on vegbiendev:
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on vegbiendev:
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# back up existing TNRS schema (in case of an accidental incorrect change):
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
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$ svn up
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$ svn di
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# make the changes shown in the diff
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## to change column types:
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SELECT util.set_col_types(''"TNRS".taxon_match'', ARRAY[
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(''col'', ''new_type'')
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]::util.col_cast[]); -- runtime: 9 min ("531282 ms")
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$ rm=1 inputs/.TNRS/schema.sql.run
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# repeat until `svn di` shows no diff
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# back up new TNRS schema:
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aaronmk
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$ make backups/TNRS.backup-remake # runtime: 3 min ("real 2m44.277s")
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';
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SET search_path = "TNRS", pg_catalog;
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--
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-- Name: batch__fill(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION batch__fill() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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new.id_by_time = new.time_submitted;
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new.id = COALESCE(new.id, new.id_by_time);
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RETURN new;
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END;
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$$;
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ALTER FUNCTION "TNRS".batch__fill() OWNER TO bien;
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--
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-- Name: family_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION family_is_homonym(family text) RETURNS boolean
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LANGUAGE sql STABLE STRICT
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AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".family_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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ALTER FUNCTION "TNRS".family_is_homonym(family text) OWNER TO bien;
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--
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-- Name: genus_is_homonym(text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION genus_is_homonym(genus text) RETURNS boolean
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LANGUAGE sql STABLE STRICT
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AS $_$
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SELECT EXISTS(SELECT * FROM "IRMNG".genus_homonym_epithet WHERE "taxonNameOrEpithet" = $1)
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$_$;
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ALTER FUNCTION "TNRS".genus_is_homonym(genus text) OWNER TO bien;
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--
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-- Name: map_taxonomic_status(text, text); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION map_taxonomic_status(taxonomic_status_verbatim text, accepted_taxon_name_no_author text) RETURNS text
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LANGUAGE sql IMMUTABLE
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AS $_$
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/* from http://wiki.vegpath.org/2013-11-14_conference_call#taxonomic-fields:
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"taxonomic_status should be accepted instead of synonym when an accepted name is
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available (this is not always the case when a name is marked as a synonym)" */
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SELECT CASE WHEN $2 IS NOT NULL THEN 'accepted' ELSE lower($1) END
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$_$;
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ALTER FUNCTION "TNRS".map_taxonomic_status(taxonomic_status_verbatim text, accepted_taxon_name_no_author text) OWNER TO bien;
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--
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-- Name: remove_prefix(text, text, boolean, boolean); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION remove_prefix(prefix text, str text, require boolean DEFAULT true, case_sensitive boolean DEFAULT true) RETURNS text
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LANGUAGE sql IMMUTABLE
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AS $$
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SELECT util.remove_prefix(prefix, str, require, case_sensitive)
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$$;
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ALTER FUNCTION "TNRS".remove_prefix(prefix text, str text, require boolean, case_sensitive boolean) OWNER TO bien;
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--
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-- Name: FUNCTION remove_prefix(prefix text, str text, require boolean, case_sensitive boolean); Type: COMMENT; Schema: TNRS; Owner: bien
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--
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COMMENT ON FUNCTION remove_prefix(prefix text, str text, require boolean, case_sensitive boolean) IS '
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wrapper that prevents views from getting dropped when the util schema is reinstalled
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';
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--
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-- Name: taxon_match__batch_begin(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION taxon_match__batch_begin() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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PERFORM util.seq__reset('pg_temp.taxon_match__match_num__seq', 0);
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RETURN NULL;
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END;
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$$;
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ALTER FUNCTION "TNRS".taxon_match__batch_begin() OWNER TO bien;
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--
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-- Name: taxon_match__fill(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION taxon_match__fill() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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DECLARE
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"Specific_epithet_is_plant" boolean :=
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(CASE
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WHEN new."*Infraspecific_epithet_matched" IS NOT NULL
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OR new."*Infraspecific_epithet_2_matched" IS NOT NULL
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OR new."*Specific_epithet_score" >= 0.9 -- fuzzy match
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THEN true
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ELSE NULL -- ambiguous
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END);
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never_homonym boolean = COALESCE(new."*Author_score" >= 0.6, false);
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-- author disambiguates
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family_is_homonym boolean = NOT never_homonym
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AND "TNRS".family_is_homonym(new."*Family_matched");
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genus_is_homonym boolean = NOT never_homonym
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AND "TNRS".genus_is_homonym(new."*Genus_matched");
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BEGIN
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/* exclude homonyms because these are not valid matches (TNRS provides a
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name, but the name is not meaningful because it is not unambiguous) */
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new.is_valid_match = new."*Taxonomic_status" != 'Invalid'
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AND COALESCE(CASE
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WHEN new."*Family_score" = 1 AND NOT family_is_homonym -- exact match
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THEN true
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ELSE -- consider genus
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(CASE
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WHEN new."*Genus_score" = 1 -- exact match
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THEN
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(CASE
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WHEN NOT genus_is_homonym THEN true
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ELSE "Specific_epithet_is_plant"
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END)
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WHEN new."*Genus_score" >= 0.85 -- fuzzy match
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THEN "Specific_epithet_is_plant"
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ELSE NULL -- ambiguous
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END)
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END, false);
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END;
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DECLARE
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matched_taxon_name_with_author text = NULLIF(concat_ws(' '
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, NULLIF(NULLIF(new."*Name_matched_accepted_family", 'Unknown'),
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new."*Name_matched")
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, NULLIF(new."*Name_matched", 'No suitable matches found.')
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, new."*Name_matched_author"
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), '');
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accepted_taxon_name_with_author text = NULLIF(concat_ws(' '
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, NULLIF(NULLIF(new."*Accepted_name_family", 'Unknown'),
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new."*Accepted_name")
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, new."*Accepted_name"
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, new."*Accepted_name_author"
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), '');
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BEGIN
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new.scrubbed_unique_taxon_name = COALESCE(
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accepted_taxon_name_with_author, matched_taxon_name_with_author);
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END;
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RETURN new;
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END;
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$$;
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ALTER FUNCTION "TNRS".taxon_match__fill() OWNER TO bien;
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--
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aaronmk
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-- Name: FUNCTION taxon_match__fill(); Type: COMMENT; Schema: TNRS; Owner: bien
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--
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COMMENT ON FUNCTION taxon_match__fill() IS '
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IMPORTANT: when changing this function, you must regenerate the derived cols:
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UPDATE "TNRS".taxon_match SET "Name_submitted" = "Name_submitted"
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runtime: 30 min ("5564082 rows affected, 1918900 ms execution time")
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VACUUM ANALYZE "TNRS".taxon_match -- to remove previous rows
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runtime: 1.5 min ("92633 ms")
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';
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--
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-- Name: taxon_match__fill_derived(); Type: FUNCTION; Schema: TNRS; Owner: bien
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--
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CREATE FUNCTION taxon_match__fill_derived() RETURNS trigger
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LANGUAGE plpgsql
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AS $$
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BEGIN
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14310
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aaronmk
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-- clear derived cols so old values won't be used in calculations
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14318
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new."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" = NULL;
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new."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
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new."matched~Name[_no_author]___@TNRS__@vegpath.org" = NULL;
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14310
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new."[matched_]scientificName[_with_author]__@DwC__@vegpath.org" = NULL;
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new.matched_has_accepted = NULL;
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14328
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new."Accepted_family__@TNRS__@vegpath.org" = NULL;
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new."__accepted_{genus,specific_epithet}" = NULL;
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new."[accepted_]genus__@DwC__@vegpath.org" = NULL;
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new."[accepted_]specificEpithet__@DwC__@vegpath.org" = NULL;
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14366
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new."Accepted_species[_binomial]__@TNRS__@vegpath.org" = NULL;
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14318
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new."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = NULL;
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14310
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new.__accepted_infraspecific_label = NULL;
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new."__accepted_infraspecific_{rank,epithet}" = NULL;
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new."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = NULL;
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new."[accepted_]infraspecificEpithet__@DwC__@vegpath.org" = NULL;
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new."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" = NULL;
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14329
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aaronmk
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new."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" = NULL;
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14310
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new."[scrubbed_]taxonRank__@DwC__@vegpath.org" = NULL;
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new."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
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new."[scrubbed_]genus__@DwC__@vegpath.org" = NULL;
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new."[scrubbed_]specificEpithet__@DwC__@vegpath.org" = NULL;
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new."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
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14329
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aaronmk
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new."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = NULL;
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14310
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aaronmk
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new."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = NULL;
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new."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" = NULL;
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new."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
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new."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" = NULL;
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new."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" = NULL;
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263 |
14279
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aaronmk
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264 |
14310
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aaronmk
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-- populate derived cols
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14318
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aaronmk
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new."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" = (SELECT "*Unmatched_terms" FROM (SELECT new.*) new);
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14310
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aaronmk
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new."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT ("*Genus_matched" || ' '::text) || "*Specific_epithet_matched" FROM (SELECT new.*) new);
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14366
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aaronmk
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new."matched~Name[_no_author]___@TNRS__@vegpath.org" = (SELECT NULLIF("*Name_matched", 'No suitable matches found.'::text) FROM (SELECT new.*) new);
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new."[matched_]scientificName[_with_author]__@DwC__@vegpath.org" = (SELECT "matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE((' '::text || "*Name_matched_author"), ''::text) FROM (SELECT new.*) new);
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14310
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aaronmk
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new.matched_has_accepted = (SELECT "*Accepted_name" IS NOT NULL FROM (SELECT new.*) new);
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14328
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aaronmk
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new."Accepted_family__@TNRS__@vegpath.org" = (SELECT COALESCE("*Accepted_name_family",
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CASE
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WHEN ("*Accepted_name_rank" = 'family'::text) THEN "*Accepted_name"
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ELSE NULL::text
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END) FROM (SELECT new.*) new);
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14310
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aaronmk
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new."__accepted_{genus,specific_epithet}" = (SELECT regexp_split_to_array("*Accepted_name_species", ' '::text) FROM (SELECT new.*) new);
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14328
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aaronmk
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new."[accepted_]genus__@DwC__@vegpath.org" = (SELECT COALESCE("__accepted_{genus,specific_epithet}"[1],
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CASE
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WHEN ("*Accepted_name_rank" = 'genus'::text) THEN "*Accepted_name"
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ELSE NULL::text
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END) FROM (SELECT new.*) new);
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14310
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aaronmk
|
new."[accepted_]specificEpithet__@DwC__@vegpath.org" = (SELECT "__accepted_{genus,specific_epithet}"[2] FROM (SELECT new.*) new);
|
282 |
14366
|
aaronmk
|
new."Accepted_species[_binomial]__@TNRS__@vegpath.org" = (SELECT rtrim("*Accepted_name_species", ' '::text) FROM (SELECT new.*) new);
|
283 |
14318
|
aaronmk
|
new."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = (SELECT CASE
|
284 |
14328
|
aaronmk
|
WHEN ("*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
285 |
|
|
WHEN ("*Accepted_name_rank" = 'genus'::text) THEN concat_ws(' '::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
286 |
14318
|
aaronmk
|
ELSE "*Accepted_name_species"
|
287 |
|
|
END FROM (SELECT new.*) new);
|
288 |
14366
|
aaronmk
|
new.__accepted_infraspecific_label = (SELECT ltrim(NULLIF("TNRS".remove_prefix("*Accepted_name_species", "*Accepted_name", require := true, case_sensitive := false), ''::text), ' '::text) FROM (SELECT new.*) new);
|
289 |
14310
|
aaronmk
|
new."__accepted_infraspecific_{rank,epithet}" = (SELECT regexp_split_to_array(__accepted_infraspecific_label, ' '::text) FROM (SELECT new.*) new);
|
290 |
|
|
new."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = (SELECT "__accepted_infraspecific_{rank,epithet}"[1] FROM (SELECT new.*) new);
|
291 |
|
|
new."[accepted_]infraspecificEpithet__@DwC__@vegpath.org" = (SELECT "__accepted_infraspecific_{rank,epithet}"[2] FROM (SELECT new.*) new);
|
292 |
|
|
new."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" = (SELECT "*Accepted_name" || COALESCE((' '::text || "*Accepted_name_author"), ''::text) FROM (SELECT new.*) new);
|
293 |
14329
|
aaronmk
|
new."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" = (SELECT "TNRS".map_taxonomic_status("*Taxonomic_status", "*Accepted_name") FROM (SELECT new.*) new);
|
294 |
14310
|
aaronmk
|
new."[scrubbed_]taxonRank__@DwC__@vegpath.org" = (SELECT CASE
|
295 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_rank"
|
296 |
|
|
ELSE "*Name_matched_rank"
|
297 |
|
|
END FROM (SELECT new.*) new);
|
298 |
|
|
new."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
|
299 |
14328
|
aaronmk
|
WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
|
300 |
14310
|
aaronmk
|
ELSE "*Name_matched_accepted_family"
|
301 |
|
|
END FROM (SELECT new.*) new);
|
302 |
|
|
new."[scrubbed_]genus__@DwC__@vegpath.org" = (SELECT CASE
|
303 |
|
|
WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
|
304 |
|
|
ELSE "*Genus_matched"
|
305 |
|
|
END FROM (SELECT new.*) new);
|
306 |
|
|
new."[scrubbed_]specificEpithet__@DwC__@vegpath.org" = (SELECT CASE
|
307 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
308 |
|
|
ELSE "*Specific_epithet_matched"
|
309 |
|
|
END FROM (SELECT new.*) new);
|
310 |
|
|
new."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
|
311 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_species"
|
312 |
|
|
ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
|
313 |
|
|
END FROM (SELECT new.*) new);
|
314 |
14329
|
aaronmk
|
new."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" = (SELECT CASE
|
315 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'family'::text) THEN concat_ws(' '::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
316 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'genus'::text) THEN concat_ws(' '::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
317 |
|
|
ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
|
318 |
|
|
END FROM (SELECT new.*) new);
|
319 |
14310
|
aaronmk
|
new."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" = (SELECT CASE
|
320 |
|
|
WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
|
321 |
|
|
ELSE "*Infraspecific_rank"
|
322 |
|
|
END FROM (SELECT new.*) new);
|
323 |
|
|
new."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" = (SELECT CASE
|
324 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
325 |
|
|
ELSE "*Infraspecific_epithet_matched"
|
326 |
|
|
END FROM (SELECT new.*) new);
|
327 |
|
|
new."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
|
328 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name"
|
329 |
14366
|
aaronmk
|
ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
|
330 |
14310
|
aaronmk
|
END FROM (SELECT new.*) new);
|
331 |
|
|
new."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" = (SELECT CASE
|
332 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_author"
|
333 |
|
|
ELSE "*Name_matched_author"
|
334 |
|
|
END FROM (SELECT new.*) new);
|
335 |
|
|
new."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" = (SELECT CASE
|
336 |
|
|
WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
|
337 |
|
|
ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
|
338 |
|
|
END FROM (SELECT new.*) new);
|
339 |
14279
|
aaronmk
|
|
340 |
|
|
RETURN new;
|
341 |
|
|
END;
|
342 |
|
|
$$;
|
343 |
|
|
|
344 |
|
|
|
345 |
|
|
ALTER FUNCTION "TNRS".taxon_match__fill_derived() OWNER TO bien;
|
346 |
|
|
|
347 |
|
|
--
|
348 |
|
|
-- Name: FUNCTION taxon_match__fill_derived(); Type: COMMENT; Schema: TNRS; Owner: bien
|
349 |
|
|
--
|
350 |
|
|
|
351 |
|
|
COMMENT ON FUNCTION taxon_match__fill_derived() IS '
|
352 |
|
|
autogenerated, do not edit
|
353 |
|
|
|
354 |
|
|
to regenerate:
|
355 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
356 |
|
|
';
|
357 |
|
|
|
358 |
|
|
|
359 |
|
|
--
|
360 |
13870
|
aaronmk
|
-- Name: taxon_match__match_num__fill(); Type: FUNCTION; Schema: TNRS; Owner: bien
|
361 |
|
|
--
|
362 |
|
|
|
363 |
|
|
CREATE FUNCTION taxon_match__match_num__fill() RETURNS trigger
|
364 |
|
|
LANGUAGE plpgsql
|
365 |
|
|
AS $$
|
366 |
|
|
BEGIN
|
367 |
|
|
IF new.match_num IS NULL THEN
|
368 |
|
|
new.match_num = "TNRS".taxon_match__match_num__next();
|
369 |
|
|
END IF;
|
370 |
|
|
RETURN new;
|
371 |
|
|
END;
|
372 |
|
|
$$;
|
373 |
|
|
|
374 |
|
|
|
375 |
|
|
ALTER FUNCTION "TNRS".taxon_match__match_num__fill() OWNER TO bien;
|
376 |
|
|
|
377 |
|
|
--
|
378 |
|
|
-- Name: taxon_match__match_num__next(); Type: FUNCTION; Schema: TNRS; Owner: bien
|
379 |
|
|
--
|
380 |
|
|
|
381 |
|
|
CREATE FUNCTION taxon_match__match_num__next() RETURNS bigint
|
382 |
|
|
LANGUAGE sql
|
383 |
|
|
AS $$
|
384 |
|
|
SELECT nextval('pg_temp.taxon_match__match_num__seq');
|
385 |
|
|
$$;
|
386 |
|
|
|
387 |
|
|
|
388 |
|
|
ALTER FUNCTION "TNRS".taxon_match__match_num__next() OWNER TO bien;
|
389 |
|
|
|
390 |
|
|
--
|
391 |
|
|
-- Name: taxon_match_input__copy_to__insert(); Type: FUNCTION; Schema: TNRS; Owner: bien
|
392 |
|
|
--
|
393 |
|
|
|
394 |
|
|
CREATE FUNCTION taxon_match_input__copy_to__insert() RETURNS trigger
|
395 |
|
|
LANGUAGE plpgsql
|
396 |
|
|
AS $$
|
397 |
|
|
BEGIN
|
398 |
|
|
INSERT INTO "TNRS".taxon_match_input SELECT new.*;
|
399 |
|
|
RETURN NULL;
|
400 |
|
|
END;
|
401 |
|
|
$$;
|
402 |
|
|
|
403 |
|
|
|
404 |
|
|
ALTER FUNCTION "TNRS".taxon_match_input__copy_to__insert() OWNER TO bien;
|
405 |
|
|
|
406 |
|
|
--
|
407 |
|
|
-- Name: taxon_name_is_safe(text); Type: FUNCTION; Schema: TNRS; Owner: bien
|
408 |
|
|
--
|
409 |
|
|
|
410 |
|
|
CREATE FUNCTION taxon_name_is_safe(taxon_name text) RETURNS boolean
|
411 |
|
|
LANGUAGE sql IMMUTABLE
|
412 |
|
|
AS $_$
|
413 |
|
|
SELECT NOT ($1 = ANY("TNRS".unsafe_taxon_names()))
|
414 |
|
|
$_$;
|
415 |
|
|
|
416 |
|
|
|
417 |
|
|
ALTER FUNCTION "TNRS".taxon_name_is_safe(taxon_name text) OWNER TO bien;
|
418 |
|
|
|
419 |
|
|
--
|
420 |
13853
|
aaronmk
|
-- Name: unsafe_taxon_names(); Type: FUNCTION; Schema: TNRS; Owner: bien
|
421 |
|
|
--
|
422 |
|
|
|
423 |
|
|
CREATE FUNCTION unsafe_taxon_names() RETURNS text[]
|
424 |
|
|
LANGUAGE sql IMMUTABLE
|
425 |
|
|
AS $$
|
426 |
|
|
SELECT ARRAY[
|
427 |
|
|
]::text[]
|
428 |
|
|
$$;
|
429 |
|
|
|
430 |
|
|
|
431 |
|
|
ALTER FUNCTION "TNRS".unsafe_taxon_names() OWNER TO bien;
|
432 |
|
|
|
433 |
5423
|
aaronmk
|
SET default_tablespace = '';
|
434 |
|
|
|
435 |
|
|
SET default_with_oids = false;
|
436 |
|
|
|
437 |
|
|
--
|
438 |
13867
|
aaronmk
|
-- Name: taxon_match; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
439 |
5423
|
aaronmk
|
--
|
440 |
|
|
|
441 |
13867
|
aaronmk
|
CREATE TABLE taxon_match (
|
442 |
10786
|
aaronmk
|
batch text DEFAULT now() NOT NULL,
|
443 |
13590
|
aaronmk
|
match_num integer NOT NULL,
|
444 |
14279
|
aaronmk
|
"*Name_number" integer NOT NULL,
|
445 |
|
|
"*Name_submitted" text NOT NULL,
|
446 |
|
|
"*Overall_score" double precision,
|
447 |
|
|
"*Name_matched" text,
|
448 |
|
|
"*Name_matched_rank" text,
|
449 |
|
|
"*Name_score" double precision,
|
450 |
|
|
"*Name_matched_author" text,
|
451 |
|
|
"*Name_matched_url" text,
|
452 |
|
|
"*Author_matched" text,
|
453 |
|
|
"*Author_score" double precision,
|
454 |
|
|
"*Family_matched" text,
|
455 |
|
|
"*Family_score" double precision,
|
456 |
|
|
"*Name_matched_accepted_family" text,
|
457 |
|
|
"*Genus_matched" text,
|
458 |
|
|
"*Genus_score" double precision,
|
459 |
|
|
"*Specific_epithet_matched" text,
|
460 |
|
|
"*Specific_epithet_score" double precision,
|
461 |
|
|
"*Infraspecific_rank" text,
|
462 |
|
|
"*Infraspecific_epithet_matched" text,
|
463 |
|
|
"*Infraspecific_epithet_score" double precision,
|
464 |
|
|
"*Infraspecific_rank_2" text,
|
465 |
|
|
"*Infraspecific_epithet_2_matched" text,
|
466 |
|
|
"*Infraspecific_epithet_2_score" double precision,
|
467 |
|
|
"*Annotations" text,
|
468 |
|
|
"*Unmatched_terms" text,
|
469 |
|
|
"*Taxonomic_status" text,
|
470 |
|
|
"*Accepted_name" text,
|
471 |
|
|
"*Accepted_name_author" text,
|
472 |
|
|
"*Accepted_name_rank" text,
|
473 |
|
|
"*Accepted_name_url" text,
|
474 |
|
|
"*Accepted_name_species" text,
|
475 |
|
|
"*Accepted_name_family" text,
|
476 |
|
|
"*Selected" text,
|
477 |
|
|
"*Source" text,
|
478 |
|
|
"*Warnings" text,
|
479 |
|
|
"*Accepted_name_lsid" text,
|
480 |
13574
|
aaronmk
|
is_valid_match boolean NOT NULL,
|
481 |
14279
|
aaronmk
|
scrubbed_unique_taxon_name text,
|
482 |
14310
|
aaronmk
|
"[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" text,
|
483 |
14279
|
aaronmk
|
"[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" text,
|
484 |
14329
|
aaronmk
|
"matched~Name[_no_author]___@TNRS__@vegpath.org" text,
|
485 |
14279
|
aaronmk
|
"[matched_]scientificName[_with_author]__@DwC__@vegpath.org" text,
|
486 |
|
|
matched_has_accepted boolean,
|
487 |
14318
|
aaronmk
|
"Accepted_family__@TNRS__@vegpath.org" text,
|
488 |
14366
|
aaronmk
|
"Accepted_species[_binomial]__@TNRS__@vegpath.org" text,
|
489 |
14279
|
aaronmk
|
"__accepted_{genus,specific_epithet}" text[],
|
490 |
|
|
"[accepted_]genus__@DwC__@vegpath.org" text,
|
491 |
|
|
"[accepted_]specificEpithet__@DwC__@vegpath.org" text,
|
492 |
14310
|
aaronmk
|
"[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" text,
|
493 |
14279
|
aaronmk
|
__accepted_infraspecific_label text,
|
494 |
|
|
"__accepted_infraspecific_{rank,epithet}" text[],
|
495 |
|
|
"[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" text,
|
496 |
|
|
"[accepted_]infraspecificEpithet__@DwC__@vegpath.org" text,
|
497 |
|
|
"[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" text,
|
498 |
14328
|
aaronmk
|
"[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" text,
|
499 |
14310
|
aaronmk
|
"[scrubbed_]taxonRank__@DwC__@vegpath.org" text,
|
500 |
|
|
"[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" text,
|
501 |
|
|
"[scrubbed_]genus__@DwC__@vegpath.org" text,
|
502 |
|
|
"[scrubbed_]specificEpithet__@DwC__@vegpath.org" text,
|
503 |
|
|
"[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" text,
|
504 |
14328
|
aaronmk
|
"[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" text,
|
505 |
14310
|
aaronmk
|
"[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" text,
|
506 |
|
|
"[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" text,
|
507 |
|
|
"[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" text,
|
508 |
|
|
"[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" text,
|
509 |
|
|
"[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" text,
|
510 |
14318
|
aaronmk
|
CONSTRAINT "Accepted_family__@TNRS__@vegpath.org" CHECK ((NOT ("Accepted_family__@TNRS__@vegpath.org" IS DISTINCT FROM COALESCE("*Accepted_name_family",
|
511 |
|
|
CASE
|
512 |
|
|
WHEN ("*Accepted_name_rank" = 'family'::text) THEN "*Accepted_name"
|
513 |
|
|
ELSE NULL::text
|
514 |
|
|
END)))),
|
515 |
14366
|
aaronmk
|
CONSTRAINT "Accepted_species[_binomial]__@TNRS__@vegpath.org" CHECK ((NOT ("Accepted_species[_binomial]__@TNRS__@vegpath.org" IS DISTINCT FROM rtrim("*Accepted_name_species", ' '::text)))),
|
516 |
14279
|
aaronmk
|
CONSTRAINT "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" CHECK ((NOT ("[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS DISTINCT FROM "__accepted_infraspecific_{rank,epithet}"[1]))),
|
517 |
14328
|
aaronmk
|
CONSTRAINT "[accepted_]genus__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]genus__@DwC__@vegpath.org" IS DISTINCT FROM COALESCE("__accepted_{genus,specific_epithet}"[1],
|
518 |
|
|
CASE
|
519 |
|
|
WHEN ("*Accepted_name_rank" = 'genus'::text) THEN "*Accepted_name"
|
520 |
|
|
ELSE NULL::text
|
521 |
|
|
END)))),
|
522 |
14279
|
aaronmk
|
CONSTRAINT "[accepted_]infraspecificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]infraspecificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM "__accepted_infraspecific_{rank,epithet}"[2]))),
|
523 |
14310
|
aaronmk
|
CONSTRAINT "[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" CHECK ((NOT ("[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS DISTINCT FROM
|
524 |
|
|
CASE
|
525 |
14328
|
aaronmk
|
WHEN ("*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
526 |
|
|
WHEN ("*Accepted_name_rank" = 'genus'::text) THEN concat_ws(' '::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
527 |
14310
|
aaronmk
|
ELSE "*Accepted_name_species"
|
528 |
|
|
END))),
|
529 |
14279
|
aaronmk
|
CONSTRAINT "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" IS DISTINCT FROM ("*Accepted_name" || COALESCE((' '::text || "*Accepted_name_author"), ''::text))))),
|
530 |
|
|
CONSTRAINT "[accepted_]specificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[accepted_]specificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM "__accepted_{genus,specific_epithet}"[2]))),
|
531 |
14366
|
aaronmk
|
CONSTRAINT "[matched_]scientificName[_with_author]__@DwC__@vegpath.org" CHECK ((NOT ("[matched_]scientificName[_with_author]__@DwC__@vegpath.org" IS DISTINCT FROM ("matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE((' '::text || "*Name_matched_author"), ''::text))))),
|
532 |
14279
|
aaronmk
|
CONSTRAINT "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM (("*Genus_matched" || ' '::text) || "*Specific_epithet_matched")))),
|
533 |
14310
|
aaronmk
|
CONSTRAINT "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" CHECK ((NOT ("[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" IS DISTINCT FROM "*Unmatched_terms"))),
|
534 |
|
|
CONSTRAINT "[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS DISTINCT FROM
|
535 |
|
|
CASE
|
536 |
|
|
WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
|
537 |
|
|
ELSE "*Infraspecific_rank"
|
538 |
|
|
END))),
|
539 |
|
|
CONSTRAINT "[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
|
540 |
|
|
CASE
|
541 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_author"
|
542 |
|
|
ELSE "*Name_matched_author"
|
543 |
|
|
END))),
|
544 |
|
|
CONSTRAINT "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
|
545 |
|
|
CASE
|
546 |
14328
|
aaronmk
|
WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
|
547 |
14310
|
aaronmk
|
ELSE "*Name_matched_accepted_family"
|
548 |
|
|
END))),
|
549 |
|
|
CONSTRAINT "[scrubbed_]genus__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]genus__@DwC__@vegpath.org" IS DISTINCT FROM
|
550 |
|
|
CASE
|
551 |
|
|
WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
|
552 |
|
|
ELSE "*Genus_matched"
|
553 |
|
|
END))),
|
554 |
|
|
CONSTRAINT "[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM
|
555 |
|
|
CASE
|
556 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
557 |
|
|
ELSE "*Infraspecific_epithet_matched"
|
558 |
|
|
END))),
|
559 |
14328
|
aaronmk
|
CONSTRAINT "[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" CHECK ((NOT ("[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS DISTINCT FROM
|
560 |
|
|
CASE
|
561 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'family'::text) THEN concat_ws(' '::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
562 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = 'genus'::text) THEN concat_ws(' '::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
563 |
|
|
ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
|
564 |
|
|
END))),
|
565 |
14310
|
aaronmk
|
CONSTRAINT "[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
|
566 |
|
|
CASE
|
567 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name"
|
568 |
14366
|
aaronmk
|
ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
|
569 |
14310
|
aaronmk
|
END))),
|
570 |
|
|
CONSTRAINT "[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" IS DISTINCT FROM
|
571 |
|
|
CASE
|
572 |
|
|
WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
|
573 |
|
|
ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
|
574 |
|
|
END))),
|
575 |
|
|
CONSTRAINT "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" CHECK ((NOT ("[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" IS DISTINCT FROM
|
576 |
|
|
CASE
|
577 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_species"
|
578 |
|
|
ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
|
579 |
|
|
END))),
|
580 |
|
|
CONSTRAINT "[scrubbed_]specificEpithet__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]specificEpithet__@DwC__@vegpath.org" IS DISTINCT FROM
|
581 |
|
|
CASE
|
582 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
583 |
|
|
ELSE "*Specific_epithet_matched"
|
584 |
|
|
END))),
|
585 |
|
|
CONSTRAINT "[scrubbed_]taxonRank__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]taxonRank__@DwC__@vegpath.org" IS DISTINCT FROM
|
586 |
|
|
CASE
|
587 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_rank"
|
588 |
|
|
ELSE "*Name_matched_rank"
|
589 |
|
|
END))),
|
590 |
14328
|
aaronmk
|
CONSTRAINT "[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" CHECK ((NOT ("[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" IS DISTINCT FROM map_taxonomic_status("*Taxonomic_status", "*Accepted_name")))),
|
591 |
14366
|
aaronmk
|
CONSTRAINT __accepted_infraspecific_label CHECK ((NOT (__accepted_infraspecific_label IS DISTINCT FROM ltrim(NULLIF(remove_prefix("*Accepted_name_species", "*Accepted_name", require := true, case_sensitive := false), ''::text), ' '::text)))),
|
592 |
14279
|
aaronmk
|
CONSTRAINT "__accepted_infraspecific_{rank,epithet}" CHECK ((NOT ("__accepted_infraspecific_{rank,epithet}" IS DISTINCT FROM regexp_split_to_array(__accepted_infraspecific_label, ' '::text)))),
|
593 |
|
|
CONSTRAINT "__accepted_{genus,specific_epithet}" CHECK ((NOT ("__accepted_{genus,specific_epithet}" IS DISTINCT FROM regexp_split_to_array("*Accepted_name_species", ' '::text)))),
|
594 |
14329
|
aaronmk
|
CONSTRAINT matched_has_accepted CHECK ((NOT (matched_has_accepted IS DISTINCT FROM ("*Accepted_name" IS NOT NULL)))),
|
595 |
|
|
CONSTRAINT "matched~Name[_no_author]___@TNRS__@vegpath.org" CHECK ((NOT ("matched~Name[_no_author]___@TNRS__@vegpath.org" IS DISTINCT FROM NULLIF("*Name_matched", 'No suitable matches found.'::text))))
|
596 |
5423
|
aaronmk
|
);
|
597 |
|
|
|
598 |
|
|
|
599 |
13867
|
aaronmk
|
ALTER TABLE "TNRS".taxon_match OWNER TO bien;
|
600 |
5423
|
aaronmk
|
|
601 |
|
|
--
|
602 |
13867
|
aaronmk
|
-- Name: TABLE taxon_match; Type: COMMENT; Schema: TNRS; Owner: bien
|
603 |
10786
|
aaronmk
|
--
|
604 |
|
|
|
605 |
13867
|
aaronmk
|
COMMENT ON TABLE taxon_match IS '
|
606 |
14279
|
aaronmk
|
whenever columns are renamed:
|
607 |
14318
|
aaronmk
|
SELECT util.derived_cols_update(''"TNRS".taxon_match'');
|
608 |
14279
|
aaronmk
|
|
609 |
14366
|
aaronmk
|
to port derived column changes to vegbiendev:
|
610 |
|
|
SELECT util.derived_cols_export(''"TNRS".taxon_match'');
|
611 |
|
|
# run the returned SQL on vegbiendev
|
612 |
|
|
-- runtime: 30 min ("5564201 rows affected, 1624829 ms execution time")
|
613 |
|
|
SELECT util.recreate_view(''"TNRS".taxon_best_match'');
|
614 |
|
|
|
615 |
|
|
to add a new derived column:
|
616 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''col''), $$
|
617 |
|
|
expr
|
618 |
|
|
$$));
|
619 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match'');
|
620 |
|
|
SELECT util.recreate_view(''"TNRS".taxon_best_match'');
|
621 |
13579
|
aaronmk
|
$ make schemas/remake
|
622 |
10786
|
aaronmk
|
|
623 |
14366
|
aaronmk
|
to remove a column:
|
624 |
|
|
SELECT util.recreate_view(''"TNRS".taxon_best_match'');
|
625 |
|
|
$ make schemas/remake
|
626 |
|
|
|
627 |
|
|
to move a derived column to the middle or to add a non-derived column:
|
628 |
13579
|
aaronmk
|
make the changes in inputs/.TNRS/schema.sql
|
629 |
|
|
$ inputs/.TNRS/data.sql.run refresh # re-run TNRS
|
630 |
14318
|
aaronmk
|
SELECT util.derived_cols_update(''"TNRS".taxon_match'');
|
631 |
|
|
SELECT util.derived_cols_repopulate(''"TNRS".taxon_match'');
|
632 |
14366
|
aaronmk
|
SELECT util.recreate_view(''"TNRS".taxon_best_match'');
|
633 |
13579
|
aaronmk
|
$ make schemas/remake
|
634 |
13590
|
aaronmk
|
|
635 |
|
|
to add a constraint: runtime: 3 min ("173620 ms")
|
636 |
13579
|
aaronmk
|
';
|
637 |
10786
|
aaronmk
|
|
638 |
13579
|
aaronmk
|
|
639 |
10786
|
aaronmk
|
--
|
640 |
14310
|
aaronmk
|
-- Name: COLUMN taxon_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
641 |
|
|
--
|
642 |
|
|
|
643 |
|
|
COMMENT ON COLUMN taxon_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org" IS '
|
644 |
|
|
= "*Unmatched_terms"
|
645 |
|
|
|
646 |
|
|
derived column
|
647 |
|
|
|
648 |
|
|
to modify expr:
|
649 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org'')::util.col, $$"*Unmatched_terms"$$)::util.derived_col_def);
|
650 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
651 |
|
|
|
652 |
|
|
to rename:
|
653 |
|
|
# rename column
|
654 |
|
|
# rename CHECK constraint
|
655 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
656 |
|
|
';
|
657 |
|
|
|
658 |
|
|
|
659 |
|
|
--
|
660 |
14279
|
aaronmk
|
-- Name: COLUMN taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
661 |
|
|
--
|
662 |
|
|
|
663 |
|
|
COMMENT ON COLUMN taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org" IS '
|
664 |
14310
|
aaronmk
|
= ("*Genus_matched" || '' ''::text) || "*Specific_epithet_matched"
|
665 |
14279
|
aaronmk
|
|
666 |
14310
|
aaronmk
|
derived column
|
667 |
|
|
|
668 |
14279
|
aaronmk
|
to modify expr:
|
669 |
14310
|
aaronmk
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$("*Genus_matched" || '' ''::text) || "*Specific_epithet_matched"$$)::util.derived_col_def);
|
670 |
14279
|
aaronmk
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
671 |
|
|
|
672 |
|
|
to rename:
|
673 |
|
|
# rename column
|
674 |
|
|
# rename CHECK constraint
|
675 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
676 |
|
|
';
|
677 |
|
|
|
678 |
|
|
|
679 |
|
|
--
|
680 |
14329
|
aaronmk
|
-- Name: COLUMN taxon_match."matched~Name[_no_author]___@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
681 |
|
|
--
|
682 |
|
|
|
683 |
|
|
COMMENT ON COLUMN taxon_match."matched~Name[_no_author]___@TNRS__@vegpath.org" IS '
|
684 |
|
|
= NULLIF("*Name_matched", ''No suitable matches found.''::text)
|
685 |
|
|
|
686 |
|
|
derived column
|
687 |
|
|
|
688 |
|
|
to modify expr:
|
689 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''matched~Name[_no_author]___@TNRS__@vegpath.org'')::util.col, $$NULLIF("*Name_matched", ''No suitable matches found.''::text)$$)::util.derived_col_def);
|
690 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
691 |
|
|
|
692 |
|
|
to rename:
|
693 |
|
|
# rename column
|
694 |
|
|
# rename CHECK constraint
|
695 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
696 |
|
|
';
|
697 |
|
|
|
698 |
|
|
|
699 |
|
|
--
|
700 |
14279
|
aaronmk
|
-- Name: COLUMN taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
701 |
|
|
--
|
702 |
|
|
|
703 |
|
|
COMMENT ON COLUMN taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org" IS '
|
704 |
14366
|
aaronmk
|
= "matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE(('' ''::text || "*Name_matched_author"), ''''::text)
|
705 |
14279
|
aaronmk
|
|
706 |
14310
|
aaronmk
|
derived column
|
707 |
|
|
|
708 |
14279
|
aaronmk
|
to modify expr:
|
709 |
14366
|
aaronmk
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[matched_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col, $$"matched~Name[_no_author]___@TNRS__@vegpath.org" || COALESCE(('' ''::text || "*Name_matched_author"), ''''::text)$$)::util.derived_col_def);
|
710 |
14279
|
aaronmk
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
711 |
|
|
|
712 |
|
|
to rename:
|
713 |
|
|
# rename column
|
714 |
|
|
# rename CHECK constraint
|
715 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
716 |
|
|
';
|
717 |
|
|
|
718 |
|
|
|
719 |
|
|
--
|
720 |
|
|
-- Name: COLUMN taxon_match.matched_has_accepted; Type: COMMENT; Schema: TNRS; Owner: bien
|
721 |
|
|
--
|
722 |
|
|
|
723 |
|
|
COMMENT ON COLUMN taxon_match.matched_has_accepted IS '
|
724 |
14310
|
aaronmk
|
= "*Accepted_name" IS NOT NULL
|
725 |
14279
|
aaronmk
|
|
726 |
14310
|
aaronmk
|
derived column
|
727 |
|
|
|
728 |
14279
|
aaronmk
|
to modify expr:
|
729 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''matched_has_accepted'')::util.col, $$"*Accepted_name" IS NOT NULL$$)::util.derived_col_def);
|
730 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
731 |
|
|
|
732 |
|
|
to rename:
|
733 |
|
|
# rename column
|
734 |
|
|
# rename CHECK constraint
|
735 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
736 |
|
|
';
|
737 |
|
|
|
738 |
|
|
|
739 |
|
|
--
|
740 |
14318
|
aaronmk
|
-- Name: COLUMN taxon_match."Accepted_family__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
741 |
|
|
--
|
742 |
|
|
|
743 |
|
|
COMMENT ON COLUMN taxon_match."Accepted_family__@TNRS__@vegpath.org" IS '
|
744 |
|
|
= COALESCE("*Accepted_name_family",
|
745 |
14328
|
aaronmk
|
CASE
|
746 |
|
|
WHEN ("*Accepted_name_rank" = ''family''::text) THEN "*Accepted_name"
|
747 |
|
|
ELSE NULL::text
|
748 |
|
|
END)
|
749 |
14318
|
aaronmk
|
|
750 |
|
|
derived column
|
751 |
|
|
|
752 |
|
|
to modify expr:
|
753 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''Accepted_family__@TNRS__@vegpath.org'')::util.col, $$COALESCE("*Accepted_name_family",
|
754 |
14328
|
aaronmk
|
CASE
|
755 |
|
|
WHEN ("*Accepted_name_rank" = ''family''::text) THEN "*Accepted_name"
|
756 |
|
|
ELSE NULL::text
|
757 |
|
|
END)$$)::util.derived_col_def);
|
758 |
14318
|
aaronmk
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
759 |
|
|
|
760 |
|
|
to rename:
|
761 |
|
|
# rename column
|
762 |
|
|
# rename CHECK constraint
|
763 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
764 |
|
|
';
|
765 |
|
|
|
766 |
|
|
|
767 |
|
|
--
|
768 |
14366
|
aaronmk
|
-- Name: COLUMN taxon_match."Accepted_species[_binomial]__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
769 |
|
|
--
|
770 |
|
|
|
771 |
|
|
COMMENT ON COLUMN taxon_match."Accepted_species[_binomial]__@TNRS__@vegpath.org" IS '
|
772 |
|
|
= rtrim("*Accepted_name_species", '' ''::text)
|
773 |
|
|
|
774 |
|
|
derived column
|
775 |
|
|
|
776 |
|
|
to modify expr:
|
777 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''Accepted_species[_binomial]__@TNRS__@vegpath.org'')::util.col, $$rtrim("*Accepted_name_species", '' ''::text)$$)::util.derived_col_def);
|
778 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
779 |
|
|
|
780 |
|
|
to rename:
|
781 |
|
|
# rename column
|
782 |
|
|
# rename CHECK constraint
|
783 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
784 |
|
|
';
|
785 |
|
|
|
786 |
|
|
|
787 |
|
|
--
|
788 |
14279
|
aaronmk
|
-- Name: COLUMN taxon_match."__accepted_{genus,specific_epithet}"; Type: COMMENT; Schema: TNRS; Owner: bien
|
789 |
|
|
--
|
790 |
|
|
|
791 |
|
|
COMMENT ON COLUMN taxon_match."__accepted_{genus,specific_epithet}" IS '
|
792 |
14310
|
aaronmk
|
= regexp_split_to_array("*Accepted_name_species", '' ''::text)
|
793 |
14279
|
aaronmk
|
|
794 |
14310
|
aaronmk
|
derived column
|
795 |
|
|
|
796 |
14279
|
aaronmk
|
to modify expr:
|
797 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''__accepted_{genus,specific_epithet}'')::util.col, $$regexp_split_to_array("*Accepted_name_species", '' ''::text)$$)::util.derived_col_def);
|
798 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
799 |
|
|
|
800 |
|
|
to rename:
|
801 |
|
|
# rename column
|
802 |
|
|
# rename CHECK constraint
|
803 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
804 |
|
|
';
|
805 |
|
|
|
806 |
|
|
|
807 |
|
|
--
|
808 |
|
|
-- Name: COLUMN taxon_match."[accepted_]genus__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
809 |
|
|
--
|
810 |
|
|
|
811 |
|
|
COMMENT ON COLUMN taxon_match."[accepted_]genus__@DwC__@vegpath.org" IS '
|
812 |
14328
|
aaronmk
|
= COALESCE("__accepted_{genus,specific_epithet}"[1],
|
813 |
|
|
CASE
|
814 |
|
|
WHEN ("*Accepted_name_rank" = ''genus''::text) THEN "*Accepted_name"
|
815 |
|
|
ELSE NULL::text
|
816 |
|
|
END)
|
817 |
14279
|
aaronmk
|
|
818 |
14310
|
aaronmk
|
derived column
|
819 |
|
|
|
820 |
14279
|
aaronmk
|
to modify expr:
|
821 |
14328
|
aaronmk
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]genus__@DwC__@vegpath.org'')::util.col, $$COALESCE("__accepted_{genus,specific_epithet}"[1],
|
822 |
|
|
CASE
|
823 |
|
|
WHEN ("*Accepted_name_rank" = ''genus''::text) THEN "*Accepted_name"
|
824 |
|
|
ELSE NULL::text
|
825 |
|
|
END)$$)::util.derived_col_def);
|
826 |
14279
|
aaronmk
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
827 |
|
|
|
828 |
|
|
to rename:
|
829 |
|
|
# rename column
|
830 |
|
|
# rename CHECK constraint
|
831 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
832 |
|
|
';
|
833 |
|
|
|
834 |
|
|
|
835 |
|
|
--
|
836 |
|
|
-- Name: COLUMN taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
837 |
|
|
--
|
838 |
|
|
|
839 |
|
|
COMMENT ON COLUMN taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org" IS '
|
840 |
14310
|
aaronmk
|
= "__accepted_{genus,specific_epithet}"[2]
|
841 |
14279
|
aaronmk
|
|
842 |
14310
|
aaronmk
|
derived column
|
843 |
|
|
|
844 |
14279
|
aaronmk
|
to modify expr:
|
845 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]specificEpithet__@DwC__@vegpath.org'')::util.col, $$"__accepted_{genus,specific_epithet}"[2]$$)::util.derived_col_def);
|
846 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
847 |
|
|
|
848 |
|
|
to rename:
|
849 |
|
|
# rename column
|
850 |
|
|
# rename CHECK constraint
|
851 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
852 |
|
|
';
|
853 |
|
|
|
854 |
|
|
|
855 |
|
|
--
|
856 |
14310
|
aaronmk
|
-- Name: COLUMN taxon_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
857 |
|
|
--
|
858 |
|
|
|
859 |
|
|
COMMENT ON COLUMN taxon_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS '
|
860 |
|
|
= CASE
|
861 |
14328
|
aaronmk
|
WHEN ("*Accepted_name_rank" = ''family''::text) THEN concat_ws('' ''::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
862 |
|
|
WHEN ("*Accepted_name_rank" = ''genus''::text) THEN concat_ws('' ''::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
863 |
14310
|
aaronmk
|
ELSE "*Accepted_name_species"
|
864 |
|
|
END
|
865 |
|
|
|
866 |
|
|
derived column
|
867 |
|
|
|
868 |
|
|
to modify expr:
|
869 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org'')::util.col, $$CASE
|
870 |
14328
|
aaronmk
|
WHEN ("*Accepted_name_rank" = ''family''::text) THEN concat_ws('' ''::text, "Accepted_family__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
871 |
|
|
WHEN ("*Accepted_name_rank" = ''genus''::text) THEN concat_ws('' ''::text, "[accepted_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
872 |
14310
|
aaronmk
|
ELSE "*Accepted_name_species"
|
873 |
|
|
END$$)::util.derived_col_def);
|
874 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
875 |
|
|
|
876 |
|
|
to rename:
|
877 |
|
|
# rename column
|
878 |
|
|
# rename CHECK constraint
|
879 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
880 |
|
|
';
|
881 |
|
|
|
882 |
|
|
|
883 |
|
|
--
|
884 |
14279
|
aaronmk
|
-- Name: COLUMN taxon_match.__accepted_infraspecific_label; Type: COMMENT; Schema: TNRS; Owner: bien
|
885 |
|
|
--
|
886 |
|
|
|
887 |
|
|
COMMENT ON COLUMN taxon_match.__accepted_infraspecific_label IS '
|
888 |
14366
|
aaronmk
|
= ltrim(NULLIF("TNRS".remove_prefix("*Accepted_name_species", "*Accepted_name", require := true, case_sensitive := false), ''''::text), '' ''::text)
|
889 |
14279
|
aaronmk
|
|
890 |
14310
|
aaronmk
|
derived column
|
891 |
|
|
|
892 |
14279
|
aaronmk
|
to modify expr:
|
893 |
14366
|
aaronmk
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''__accepted_infraspecific_label'')::util.col, $$ltrim(NULLIF("TNRS".remove_prefix("*Accepted_name_species", "*Accepted_name", require := true, case_sensitive := false), ''''::text), '' ''::text)$$)::util.derived_col_def);
|
894 |
14279
|
aaronmk
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
895 |
|
|
|
896 |
|
|
to rename:
|
897 |
|
|
# rename column
|
898 |
|
|
# rename CHECK constraint
|
899 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
900 |
|
|
';
|
901 |
|
|
|
902 |
|
|
|
903 |
|
|
--
|
904 |
|
|
-- Name: COLUMN taxon_match."__accepted_infraspecific_{rank,epithet}"; Type: COMMENT; Schema: TNRS; Owner: bien
|
905 |
|
|
--
|
906 |
|
|
|
907 |
|
|
COMMENT ON COLUMN taxon_match."__accepted_infraspecific_{rank,epithet}" IS '
|
908 |
14310
|
aaronmk
|
= regexp_split_to_array(__accepted_infraspecific_label, '' ''::text)
|
909 |
14279
|
aaronmk
|
|
910 |
14310
|
aaronmk
|
derived column
|
911 |
|
|
|
912 |
14279
|
aaronmk
|
to modify expr:
|
913 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''__accepted_infraspecific_{rank,epithet}'')::util.col, $$regexp_split_to_array(__accepted_infraspecific_label, '' ''::text)$$)::util.derived_col_def);
|
914 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
915 |
|
|
|
916 |
|
|
to rename:
|
917 |
|
|
# rename column
|
918 |
|
|
# rename CHECK constraint
|
919 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
920 |
|
|
';
|
921 |
|
|
|
922 |
|
|
|
923 |
|
|
--
|
924 |
|
|
-- Name: COLUMN taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
925 |
|
|
--
|
926 |
|
|
|
927 |
|
|
COMMENT ON COLUMN taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS '
|
928 |
14310
|
aaronmk
|
= "__accepted_infraspecific_{rank,epithet}"[1]
|
929 |
14279
|
aaronmk
|
|
930 |
14310
|
aaronmk
|
derived column
|
931 |
|
|
|
932 |
14279
|
aaronmk
|
to modify expr:
|
933 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org'')::util.col, $$"__accepted_infraspecific_{rank,epithet}"[1]$$)::util.derived_col_def);
|
934 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
935 |
|
|
|
936 |
|
|
to rename:
|
937 |
|
|
# rename column
|
938 |
|
|
# rename CHECK constraint
|
939 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
940 |
|
|
';
|
941 |
|
|
|
942 |
|
|
|
943 |
|
|
--
|
944 |
|
|
-- Name: COLUMN taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
945 |
|
|
--
|
946 |
|
|
|
947 |
|
|
COMMENT ON COLUMN taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org" IS '
|
948 |
14310
|
aaronmk
|
= "__accepted_infraspecific_{rank,epithet}"[2]
|
949 |
14279
|
aaronmk
|
|
950 |
14310
|
aaronmk
|
derived column
|
951 |
|
|
|
952 |
14279
|
aaronmk
|
to modify expr:
|
953 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]infraspecificEpithet__@DwC__@vegpath.org'')::util.col, $$"__accepted_infraspecific_{rank,epithet}"[2]$$)::util.derived_col_def);
|
954 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
955 |
|
|
|
956 |
|
|
to rename:
|
957 |
|
|
# rename column
|
958 |
|
|
# rename CHECK constraint
|
959 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
960 |
|
|
';
|
961 |
|
|
|
962 |
|
|
|
963 |
|
|
--
|
964 |
|
|
-- Name: COLUMN taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
965 |
|
|
--
|
966 |
|
|
|
967 |
|
|
COMMENT ON COLUMN taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org" IS '
|
968 |
14310
|
aaronmk
|
= "*Accepted_name" || COALESCE(('' ''::text || "*Accepted_name_author"), ''''::text)
|
969 |
14279
|
aaronmk
|
|
970 |
14310
|
aaronmk
|
derived column
|
971 |
|
|
|
972 |
14279
|
aaronmk
|
to modify expr:
|
973 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[accepted_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col, $$"*Accepted_name" || COALESCE(('' ''::text || "*Accepted_name_author"), ''''::text)$$)::util.derived_col_def);
|
974 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
975 |
|
|
|
976 |
|
|
to rename:
|
977 |
|
|
# rename column
|
978 |
|
|
# rename CHECK constraint
|
979 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
980 |
|
|
';
|
981 |
|
|
|
982 |
|
|
|
983 |
|
|
--
|
984 |
14328
|
aaronmk
|
-- Name: COLUMN taxon_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
985 |
|
|
--
|
986 |
|
|
|
987 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org" IS '
|
988 |
|
|
= "TNRS".map_taxonomic_status("*Taxonomic_status", "*Accepted_name")
|
989 |
|
|
|
990 |
|
|
derived column
|
991 |
|
|
|
992 |
|
|
to modify expr:
|
993 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]taxonomicStatus__@DwC__@vegpath.org'')::util.col, $$"TNRS".map_taxonomic_status("*Taxonomic_status", "*Accepted_name")$$)::util.derived_col_def);
|
994 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
995 |
|
|
|
996 |
|
|
to rename:
|
997 |
|
|
# rename column
|
998 |
|
|
# rename CHECK constraint
|
999 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1000 |
|
|
';
|
1001 |
|
|
|
1002 |
|
|
|
1003 |
|
|
--
|
1004 |
14310
|
aaronmk
|
-- Name: COLUMN taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1005 |
|
|
--
|
1006 |
|
|
|
1007 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org" IS '
|
1008 |
|
|
= CASE
|
1009 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_rank"
|
1010 |
|
|
ELSE "*Name_matched_rank"
|
1011 |
|
|
END
|
1012 |
|
|
|
1013 |
|
|
derived column
|
1014 |
|
|
|
1015 |
|
|
to modify expr:
|
1016 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]taxonRank__@DwC__@vegpath.org'')::util.col, $$CASE
|
1017 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_rank"
|
1018 |
|
|
ELSE "*Name_matched_rank"
|
1019 |
|
|
END$$)::util.derived_col_def);
|
1020 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1021 |
|
|
|
1022 |
|
|
to rename:
|
1023 |
|
|
# rename column
|
1024 |
|
|
# rename CHECK constraint
|
1025 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1026 |
|
|
';
|
1027 |
|
|
|
1028 |
|
|
|
1029 |
|
|
--
|
1030 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1031 |
|
|
--
|
1032 |
|
|
|
1033 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org" IS '
|
1034 |
|
|
= CASE
|
1035 |
14328
|
aaronmk
|
WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
|
1036 |
14310
|
aaronmk
|
ELSE "*Name_matched_accepted_family"
|
1037 |
|
|
END
|
1038 |
|
|
|
1039 |
|
|
derived column
|
1040 |
|
|
|
1041 |
|
|
to modify expr:
|
1042 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
|
1043 |
14328
|
aaronmk
|
WHEN matched_has_accepted THEN "Accepted_family__@TNRS__@vegpath.org"
|
1044 |
14310
|
aaronmk
|
ELSE "*Name_matched_accepted_family"
|
1045 |
|
|
END$$)::util.derived_col_def);
|
1046 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1047 |
|
|
|
1048 |
|
|
to rename:
|
1049 |
|
|
# rename column
|
1050 |
|
|
# rename CHECK constraint
|
1051 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1052 |
|
|
';
|
1053 |
|
|
|
1054 |
|
|
|
1055 |
|
|
--
|
1056 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]genus__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1057 |
|
|
--
|
1058 |
|
|
|
1059 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]genus__@DwC__@vegpath.org" IS '
|
1060 |
|
|
= CASE
|
1061 |
|
|
WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
|
1062 |
|
|
ELSE "*Genus_matched"
|
1063 |
|
|
END
|
1064 |
|
|
|
1065 |
|
|
derived column
|
1066 |
|
|
|
1067 |
|
|
to modify expr:
|
1068 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]genus__@DwC__@vegpath.org'')::util.col, $$CASE
|
1069 |
|
|
WHEN matched_has_accepted THEN "[accepted_]genus__@DwC__@vegpath.org"
|
1070 |
|
|
ELSE "*Genus_matched"
|
1071 |
|
|
END$$)::util.derived_col_def);
|
1072 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1073 |
|
|
|
1074 |
|
|
to rename:
|
1075 |
|
|
# rename column
|
1076 |
|
|
# rename CHECK constraint
|
1077 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1078 |
|
|
';
|
1079 |
|
|
|
1080 |
|
|
|
1081 |
|
|
--
|
1082 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1083 |
|
|
--
|
1084 |
|
|
|
1085 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org" IS '
|
1086 |
|
|
= CASE
|
1087 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
1088 |
|
|
ELSE "*Specific_epithet_matched"
|
1089 |
|
|
END
|
1090 |
|
|
|
1091 |
|
|
derived column
|
1092 |
|
|
|
1093 |
|
|
to modify expr:
|
1094 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]specificEpithet__@DwC__@vegpath.org'')::util.col, $$CASE
|
1095 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
1096 |
|
|
ELSE "*Specific_epithet_matched"
|
1097 |
|
|
END$$)::util.derived_col_def);
|
1098 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1099 |
|
|
|
1100 |
|
|
to rename:
|
1101 |
|
|
# rename column
|
1102 |
|
|
# rename CHECK constraint
|
1103 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1104 |
|
|
';
|
1105 |
|
|
|
1106 |
|
|
|
1107 |
|
|
--
|
1108 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1109 |
|
|
--
|
1110 |
|
|
|
1111 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org" IS '
|
1112 |
|
|
= CASE
|
1113 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_species"
|
1114 |
|
|
ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
|
1115 |
|
|
END
|
1116 |
|
|
|
1117 |
|
|
derived column
|
1118 |
|
|
|
1119 |
|
|
to modify expr:
|
1120 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
|
1121 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_species"
|
1122 |
|
|
ELSE "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org"
|
1123 |
|
|
END$$)::util.derived_col_def);
|
1124 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1125 |
|
|
|
1126 |
|
|
to rename:
|
1127 |
|
|
# rename column
|
1128 |
|
|
# rename CHECK constraint
|
1129 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1130 |
|
|
';
|
1131 |
|
|
|
1132 |
|
|
|
1133 |
|
|
--
|
1134 |
14328
|
aaronmk
|
-- Name: COLUMN taxon_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1135 |
|
|
--
|
1136 |
|
|
|
1137 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org" IS '
|
1138 |
|
|
= CASE
|
1139 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''family''::text) THEN concat_ws('' ''::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
1140 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''genus''::text) THEN concat_ws('' ''::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
1141 |
|
|
ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
|
1142 |
|
|
END
|
1143 |
|
|
|
1144 |
|
|
derived column
|
1145 |
|
|
|
1146 |
|
|
to modify expr:
|
1147 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org'')::util.col, $$CASE
|
1148 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''family''::text) THEN concat_ws('' ''::text, "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
1149 |
|
|
WHEN ("[scrubbed_]taxonRank__@DwC__@vegpath.org" = ''genus''::text) THEN concat_ws('' ''::text, "[scrubbed_]genus__@DwC__@vegpath.org", "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org")
|
1150 |
|
|
ELSE "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org"
|
1151 |
|
|
END$$)::util.derived_col_def);
|
1152 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1153 |
|
|
|
1154 |
|
|
to rename:
|
1155 |
|
|
# rename column
|
1156 |
|
|
# rename CHECK constraint
|
1157 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1158 |
|
|
';
|
1159 |
|
|
|
1160 |
|
|
|
1161 |
|
|
--
|
1162 |
14310
|
aaronmk
|
-- Name: COLUMN taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1163 |
|
|
--
|
1164 |
|
|
|
1165 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org" IS '
|
1166 |
|
|
= CASE
|
1167 |
|
|
WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
|
1168 |
|
|
ELSE "*Infraspecific_rank"
|
1169 |
|
|
END
|
1170 |
|
|
|
1171 |
|
|
derived column
|
1172 |
|
|
|
1173 |
|
|
to modify expr:
|
1174 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org'')::util.col, $$CASE
|
1175 |
|
|
WHEN matched_has_accepted THEN "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org"
|
1176 |
|
|
ELSE "*Infraspecific_rank"
|
1177 |
|
|
END$$)::util.derived_col_def);
|
1178 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1179 |
|
|
|
1180 |
|
|
to rename:
|
1181 |
|
|
# rename column
|
1182 |
|
|
# rename CHECK constraint
|
1183 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1184 |
|
|
';
|
1185 |
|
|
|
1186 |
|
|
|
1187 |
|
|
--
|
1188 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1189 |
|
|
--
|
1190 |
|
|
|
1191 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org" IS '
|
1192 |
|
|
= CASE
|
1193 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
1194 |
|
|
ELSE "*Infraspecific_epithet_matched"
|
1195 |
|
|
END
|
1196 |
|
|
|
1197 |
|
|
derived column
|
1198 |
|
|
|
1199 |
|
|
to modify expr:
|
1200 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org'')::util.col, $$CASE
|
1201 |
|
|
WHEN matched_has_accepted THEN "[accepted_]specificEpithet__@DwC__@vegpath.org"
|
1202 |
|
|
ELSE "*Infraspecific_epithet_matched"
|
1203 |
|
|
END$$)::util.derived_col_def);
|
1204 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1205 |
|
|
|
1206 |
|
|
to rename:
|
1207 |
|
|
# rename column
|
1208 |
|
|
# rename CHECK constraint
|
1209 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1210 |
|
|
';
|
1211 |
|
|
|
1212 |
|
|
|
1213 |
|
|
--
|
1214 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1215 |
|
|
--
|
1216 |
|
|
|
1217 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org" IS '
|
1218 |
|
|
= CASE
|
1219 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name"
|
1220 |
14366
|
aaronmk
|
ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
|
1221 |
14310
|
aaronmk
|
END
|
1222 |
|
|
|
1223 |
|
|
derived column
|
1224 |
|
|
|
1225 |
|
|
to modify expr:
|
1226 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
|
1227 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name"
|
1228 |
14366
|
aaronmk
|
ELSE "matched~Name[_no_author]___@TNRS__@vegpath.org"
|
1229 |
14310
|
aaronmk
|
END$$)::util.derived_col_def);
|
1230 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1231 |
|
|
|
1232 |
|
|
to rename:
|
1233 |
|
|
# rename column
|
1234 |
|
|
# rename CHECK constraint
|
1235 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1236 |
|
|
';
|
1237 |
|
|
|
1238 |
|
|
|
1239 |
|
|
--
|
1240 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1241 |
|
|
--
|
1242 |
|
|
|
1243 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org" IS '
|
1244 |
|
|
= CASE
|
1245 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_author"
|
1246 |
|
|
ELSE "*Name_matched_author"
|
1247 |
|
|
END
|
1248 |
|
|
|
1249 |
|
|
derived column
|
1250 |
|
|
|
1251 |
|
|
to modify expr:
|
1252 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org'')::util.col, $$CASE
|
1253 |
|
|
WHEN matched_has_accepted THEN "*Accepted_name_author"
|
1254 |
|
|
ELSE "*Name_matched_author"
|
1255 |
|
|
END$$)::util.derived_col_def);
|
1256 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1257 |
|
|
|
1258 |
|
|
to rename:
|
1259 |
|
|
# rename column
|
1260 |
|
|
# rename CHECK constraint
|
1261 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1262 |
|
|
';
|
1263 |
|
|
|
1264 |
|
|
|
1265 |
|
|
--
|
1266 |
|
|
-- Name: COLUMN taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1267 |
|
|
--
|
1268 |
|
|
|
1269 |
|
|
COMMENT ON COLUMN taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org" IS '
|
1270 |
|
|
= CASE
|
1271 |
|
|
WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
|
1272 |
|
|
ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
|
1273 |
|
|
END
|
1274 |
|
|
|
1275 |
|
|
derived column
|
1276 |
|
|
|
1277 |
|
|
to modify expr:
|
1278 |
|
|
SELECT util.derived_col_update(((''"TNRS".taxon_match'', ''[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org'')::util.col, $$CASE
|
1279 |
|
|
WHEN matched_has_accepted THEN "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org"
|
1280 |
|
|
ELSE "[matched_]scientificName[_with_author]__@DwC__@vegpath.org"
|
1281 |
|
|
END$$)::util.derived_col_def);
|
1282 |
|
|
SELECT util.derived_cols_populate(''"TNRS".taxon_match''::regclass);
|
1283 |
|
|
|
1284 |
|
|
to rename:
|
1285 |
|
|
# rename column
|
1286 |
|
|
# rename CHECK constraint
|
1287 |
|
|
SELECT util.derived_cols_update(''"TNRS".taxon_match''::regclass);
|
1288 |
|
|
';
|
1289 |
|
|
|
1290 |
|
|
|
1291 |
|
|
--
|
1292 |
14279
|
aaronmk
|
-- Name: taxon_best_match; Type: VIEW; Schema: TNRS; Owner: bien
|
1293 |
|
|
--
|
1294 |
|
|
|
1295 |
|
|
CREATE VIEW taxon_best_match AS
|
1296 |
|
|
SELECT taxon_match.batch,
|
1297 |
|
|
taxon_match.match_num,
|
1298 |
|
|
taxon_match."*Name_number",
|
1299 |
|
|
taxon_match."*Name_submitted",
|
1300 |
|
|
taxon_match."*Overall_score",
|
1301 |
|
|
taxon_match."*Name_matched",
|
1302 |
|
|
taxon_match."*Name_matched_rank",
|
1303 |
|
|
taxon_match."*Name_score",
|
1304 |
|
|
taxon_match."*Name_matched_author",
|
1305 |
|
|
taxon_match."*Name_matched_url",
|
1306 |
|
|
taxon_match."*Author_matched",
|
1307 |
|
|
taxon_match."*Author_score",
|
1308 |
|
|
taxon_match."*Family_matched",
|
1309 |
|
|
taxon_match."*Family_score",
|
1310 |
|
|
taxon_match."*Name_matched_accepted_family",
|
1311 |
|
|
taxon_match."*Genus_matched",
|
1312 |
|
|
taxon_match."*Genus_score",
|
1313 |
|
|
taxon_match."*Specific_epithet_matched",
|
1314 |
|
|
taxon_match."*Specific_epithet_score",
|
1315 |
|
|
taxon_match."*Infraspecific_rank",
|
1316 |
|
|
taxon_match."*Infraspecific_epithet_matched",
|
1317 |
|
|
taxon_match."*Infraspecific_epithet_score",
|
1318 |
|
|
taxon_match."*Infraspecific_rank_2",
|
1319 |
|
|
taxon_match."*Infraspecific_epithet_2_matched",
|
1320 |
|
|
taxon_match."*Infraspecific_epithet_2_score",
|
1321 |
|
|
taxon_match."*Annotations",
|
1322 |
|
|
taxon_match."*Unmatched_terms",
|
1323 |
|
|
taxon_match."*Taxonomic_status",
|
1324 |
|
|
taxon_match."*Accepted_name",
|
1325 |
|
|
taxon_match."*Accepted_name_author",
|
1326 |
|
|
taxon_match."*Accepted_name_rank",
|
1327 |
|
|
taxon_match."*Accepted_name_url",
|
1328 |
|
|
taxon_match."*Accepted_name_species",
|
1329 |
|
|
taxon_match."*Accepted_name_family",
|
1330 |
|
|
taxon_match."*Selected",
|
1331 |
|
|
taxon_match."*Source",
|
1332 |
|
|
taxon_match."*Warnings",
|
1333 |
|
|
taxon_match."*Accepted_name_lsid",
|
1334 |
|
|
taxon_match.is_valid_match,
|
1335 |
|
|
taxon_match.scrubbed_unique_taxon_name,
|
1336 |
14366
|
aaronmk
|
taxon_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org",
|
1337 |
14310
|
aaronmk
|
taxon_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1338 |
14366
|
aaronmk
|
taxon_match."matched~Name[_no_author]___@TNRS__@vegpath.org",
|
1339 |
14310
|
aaronmk
|
taxon_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1340 |
|
|
taxon_match.matched_has_accepted,
|
1341 |
14366
|
aaronmk
|
taxon_match."Accepted_family__@TNRS__@vegpath.org",
|
1342 |
14279
|
aaronmk
|
taxon_match."__accepted_{genus,specific_epithet}",
|
1343 |
|
|
taxon_match."[accepted_]genus__@DwC__@vegpath.org",
|
1344 |
|
|
taxon_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
|
1345 |
14366
|
aaronmk
|
taxon_match."Accepted_species[_binomial]__@TNRS__@vegpath.org",
|
1346 |
|
|
taxon_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1347 |
14279
|
aaronmk
|
taxon_match.__accepted_infraspecific_label,
|
1348 |
|
|
taxon_match."__accepted_infraspecific_{rank,epithet}",
|
1349 |
|
|
taxon_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1350 |
|
|
taxon_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
|
1351 |
14310
|
aaronmk
|
taxon_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1352 |
14366
|
aaronmk
|
taxon_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org",
|
1353 |
14310
|
aaronmk
|
taxon_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
|
1354 |
|
|
taxon_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
|
1355 |
|
|
taxon_match."[scrubbed_]genus__@DwC__@vegpath.org",
|
1356 |
|
|
taxon_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
|
1357 |
|
|
taxon_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1358 |
14366
|
aaronmk
|
taxon_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1359 |
14310
|
aaronmk
|
taxon_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1360 |
|
|
taxon_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
|
1361 |
|
|
taxon_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1362 |
|
|
taxon_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
|
1363 |
|
|
taxon_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org"
|
1364 |
14279
|
aaronmk
|
FROM taxon_match
|
1365 |
|
|
WHERE (taxon_match."*Selected" = 'true'::text);
|
1366 |
|
|
|
1367 |
|
|
|
1368 |
|
|
ALTER TABLE "TNRS".taxon_best_match OWNER TO bien;
|
1369 |
|
|
|
1370 |
|
|
--
|
1371 |
|
|
-- Name: VIEW taxon_best_match; Type: COMMENT; Schema: TNRS; Owner: bien
|
1372 |
|
|
--
|
1373 |
|
|
|
1374 |
|
|
COMMENT ON VIEW taxon_best_match IS '
|
1375 |
|
|
to modify:
|
1376 |
|
|
SELECT util.recreate_view(''"TNRS"."taxon_best_match"'', $$
|
1377 |
|
|
SELECT __
|
1378 |
|
|
$$);
|
1379 |
|
|
';
|
1380 |
|
|
|
1381 |
|
|
|
1382 |
|
|
--
|
1383 |
9493
|
aaronmk
|
-- Name: MatchedTaxon; Type: VIEW; Schema: TNRS; Owner: bien
|
1384 |
5917
|
aaronmk
|
--
|
1385 |
|
|
|
1386 |
9493
|
aaronmk
|
CREATE VIEW "MatchedTaxon" AS
|
1387 |
14279
|
aaronmk
|
SELECT taxon_best_match.batch,
|
1388 |
|
|
taxon_best_match.match_num,
|
1389 |
|
|
taxon_best_match."*Name_number",
|
1390 |
|
|
taxon_best_match."*Name_submitted",
|
1391 |
|
|
taxon_best_match."*Overall_score",
|
1392 |
|
|
taxon_best_match."*Name_matched",
|
1393 |
|
|
taxon_best_match."*Name_matched_rank",
|
1394 |
|
|
taxon_best_match."*Name_score",
|
1395 |
|
|
taxon_best_match."*Name_matched_author",
|
1396 |
|
|
taxon_best_match."*Name_matched_url",
|
1397 |
|
|
taxon_best_match."*Author_matched",
|
1398 |
|
|
taxon_best_match."*Author_score",
|
1399 |
|
|
taxon_best_match."*Family_matched",
|
1400 |
|
|
taxon_best_match."*Family_score",
|
1401 |
|
|
taxon_best_match."*Name_matched_accepted_family",
|
1402 |
|
|
taxon_best_match."*Genus_matched",
|
1403 |
|
|
taxon_best_match."*Genus_score",
|
1404 |
|
|
taxon_best_match."*Specific_epithet_matched",
|
1405 |
|
|
taxon_best_match."*Specific_epithet_score",
|
1406 |
|
|
taxon_best_match."*Infraspecific_rank",
|
1407 |
|
|
taxon_best_match."*Infraspecific_epithet_matched",
|
1408 |
|
|
taxon_best_match."*Infraspecific_epithet_score",
|
1409 |
|
|
taxon_best_match."*Infraspecific_rank_2",
|
1410 |
|
|
taxon_best_match."*Infraspecific_epithet_2_matched",
|
1411 |
|
|
taxon_best_match."*Infraspecific_epithet_2_score",
|
1412 |
|
|
taxon_best_match."*Annotations",
|
1413 |
|
|
taxon_best_match."*Unmatched_terms",
|
1414 |
|
|
taxon_best_match."*Taxonomic_status",
|
1415 |
|
|
taxon_best_match."*Accepted_name",
|
1416 |
|
|
taxon_best_match."*Accepted_name_author",
|
1417 |
|
|
taxon_best_match."*Accepted_name_rank",
|
1418 |
|
|
taxon_best_match."*Accepted_name_url",
|
1419 |
|
|
taxon_best_match."*Accepted_name_species",
|
1420 |
|
|
taxon_best_match."*Accepted_name_family",
|
1421 |
|
|
taxon_best_match."*Selected",
|
1422 |
|
|
taxon_best_match."*Source",
|
1423 |
|
|
taxon_best_match."*Warnings",
|
1424 |
|
|
taxon_best_match."*Accepted_name_lsid",
|
1425 |
|
|
taxon_best_match.is_valid_match,
|
1426 |
|
|
taxon_best_match.scrubbed_unique_taxon_name,
|
1427 |
14366
|
aaronmk
|
taxon_best_match."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org",
|
1428 |
14310
|
aaronmk
|
taxon_best_match."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1429 |
14366
|
aaronmk
|
taxon_best_match."matched~Name[_no_author]___@TNRS__@vegpath.org",
|
1430 |
14310
|
aaronmk
|
taxon_best_match."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1431 |
|
|
taxon_best_match.matched_has_accepted,
|
1432 |
14366
|
aaronmk
|
taxon_best_match."Accepted_family__@TNRS__@vegpath.org",
|
1433 |
14279
|
aaronmk
|
taxon_best_match."__accepted_{genus,specific_epithet}",
|
1434 |
|
|
taxon_best_match."[accepted_]genus__@DwC__@vegpath.org",
|
1435 |
|
|
taxon_best_match."[accepted_]specificEpithet__@DwC__@vegpath.org",
|
1436 |
14366
|
aaronmk
|
taxon_best_match."Accepted_species[_binomial]__@TNRS__@vegpath.org",
|
1437 |
|
|
taxon_best_match."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1438 |
14279
|
aaronmk
|
taxon_best_match.__accepted_infraspecific_label,
|
1439 |
|
|
taxon_best_match."__accepted_infraspecific_{rank,epithet}",
|
1440 |
|
|
taxon_best_match."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1441 |
|
|
taxon_best_match."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
|
1442 |
|
|
taxon_best_match."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1443 |
14366
|
aaronmk
|
taxon_best_match."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org",
|
1444 |
14310
|
aaronmk
|
taxon_best_match."[scrubbed_]taxonRank__@DwC__@vegpath.org",
|
1445 |
|
|
taxon_best_match."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
|
1446 |
|
|
taxon_best_match."[scrubbed_]genus__@DwC__@vegpath.org",
|
1447 |
|
|
taxon_best_match."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
|
1448 |
|
|
taxon_best_match."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1449 |
14366
|
aaronmk
|
taxon_best_match."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1450 |
14310
|
aaronmk
|
taxon_best_match."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1451 |
|
|
taxon_best_match."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
|
1452 |
|
|
taxon_best_match."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1453 |
|
|
taxon_best_match."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
|
1454 |
|
|
taxon_best_match."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1455 |
14279
|
aaronmk
|
map_taxonomic_status(taxon_best_match."*Taxonomic_status", taxon_best_match."*Accepted_name") AS "taxonomicStatus",
|
1456 |
13574
|
aaronmk
|
CASE
|
1457 |
14279
|
aaronmk
|
WHEN (taxon_best_match."*Accepted_name_rank" = 'family'::text) THEN concat_ws(' '::text, taxon_best_match."*Accepted_name_family", taxon_best_match."*Unmatched_terms")
|
1458 |
|
|
WHEN (taxon_best_match."*Accepted_name_rank" = 'genus'::text) THEN concat_ws(' '::text, taxon_best_match."*Accepted_name", taxon_best_match."*Unmatched_terms")
|
1459 |
|
|
ELSE taxon_best_match."*Accepted_name_species"
|
1460 |
13574
|
aaronmk
|
END AS accepted_morphospecies_binomial
|
1461 |
14279
|
aaronmk
|
FROM taxon_best_match;
|
1462 |
5917
|
aaronmk
|
|
1463 |
|
|
|
1464 |
9493
|
aaronmk
|
ALTER TABLE "TNRS"."MatchedTaxon" OWNER TO bien;
|
1465 |
5917
|
aaronmk
|
|
1466 |
|
|
--
|
1467 |
13574
|
aaronmk
|
-- Name: VIEW "MatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1468 |
9762
|
aaronmk
|
--
|
1469 |
|
|
|
1470 |
13574
|
aaronmk
|
COMMENT ON VIEW "MatchedTaxon" IS '
|
1471 |
|
|
to modify:
|
1472 |
13853
|
aaronmk
|
SELECT util.recreate_view(''"TNRS"."MatchedTaxon"'', $$
|
1473 |
|
|
SELECT __
|
1474 |
13574
|
aaronmk
|
$$);
|
1475 |
|
|
';
|
1476 |
9762
|
aaronmk
|
|
1477 |
|
|
|
1478 |
|
|
--
|
1479 |
13574
|
aaronmk
|
-- Name: Source; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
1480 |
10786
|
aaronmk
|
--
|
1481 |
|
|
|
1482 |
13574
|
aaronmk
|
CREATE TABLE "Source" (
|
1483 |
|
|
"*row_num" integer NOT NULL,
|
1484 |
|
|
"sourceType" text DEFAULT 'aggregator'::text NOT NULL,
|
1485 |
14279
|
aaronmk
|
"datasetURL" text DEFAULT 'http://[TNRS_dev_server].iplantcollaborative.org/TNRSapp.html'::text NOT NULL,
|
1486 |
13574
|
aaronmk
|
CONSTRAINT nulls_mapped CHECK (true)
|
1487 |
|
|
);
|
1488 |
10786
|
aaronmk
|
|
1489 |
|
|
|
1490 |
13574
|
aaronmk
|
ALTER TABLE "TNRS"."Source" OWNER TO bien;
|
1491 |
|
|
|
1492 |
10786
|
aaronmk
|
--
|
1493 |
13574
|
aaronmk
|
-- Name: COLUMN "Source"."sourceType"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1494 |
5423
|
aaronmk
|
--
|
1495 |
|
|
|
1496 |
13574
|
aaronmk
|
COMMENT ON COLUMN "Source"."sourceType" IS '
|
1497 |
|
|
constant
|
1498 |
|
|
';
|
1499 |
5423
|
aaronmk
|
|
1500 |
|
|
|
1501 |
|
|
--
|
1502 |
13574
|
aaronmk
|
-- Name: COLUMN "Source"."datasetURL"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1503 |
10786
|
aaronmk
|
--
|
1504 |
|
|
|
1505 |
13574
|
aaronmk
|
COMMENT ON COLUMN "Source"."datasetURL" IS '
|
1506 |
|
|
constant
|
1507 |
|
|
';
|
1508 |
10786
|
aaronmk
|
|
1509 |
|
|
|
1510 |
|
|
--
|
1511 |
13574
|
aaronmk
|
-- Name: ValidMatchedTaxon; Type: VIEW; Schema: TNRS; Owner: bien
|
1512 |
10395
|
aaronmk
|
--
|
1513 |
|
|
|
1514 |
13574
|
aaronmk
|
CREATE VIEW "ValidMatchedTaxon" AS
|
1515 |
14279
|
aaronmk
|
SELECT "MatchedTaxon".batch,
|
1516 |
|
|
"MatchedTaxon".match_num,
|
1517 |
|
|
"MatchedTaxon"."*Name_number",
|
1518 |
|
|
"MatchedTaxon"."*Name_submitted",
|
1519 |
|
|
"MatchedTaxon"."*Overall_score",
|
1520 |
|
|
"MatchedTaxon"."*Name_matched",
|
1521 |
|
|
"MatchedTaxon"."*Name_matched_rank",
|
1522 |
|
|
"MatchedTaxon"."*Name_score",
|
1523 |
|
|
"MatchedTaxon"."*Name_matched_author",
|
1524 |
|
|
"MatchedTaxon"."*Name_matched_url",
|
1525 |
|
|
"MatchedTaxon"."*Author_matched",
|
1526 |
|
|
"MatchedTaxon"."*Author_score",
|
1527 |
|
|
"MatchedTaxon"."*Family_matched",
|
1528 |
|
|
"MatchedTaxon"."*Family_score",
|
1529 |
|
|
"MatchedTaxon"."*Name_matched_accepted_family",
|
1530 |
|
|
"MatchedTaxon"."*Genus_matched",
|
1531 |
|
|
"MatchedTaxon"."*Genus_score",
|
1532 |
|
|
"MatchedTaxon"."*Specific_epithet_matched",
|
1533 |
|
|
"MatchedTaxon"."*Specific_epithet_score",
|
1534 |
|
|
"MatchedTaxon"."*Infraspecific_rank",
|
1535 |
|
|
"MatchedTaxon"."*Infraspecific_epithet_matched",
|
1536 |
|
|
"MatchedTaxon"."*Infraspecific_epithet_score",
|
1537 |
|
|
"MatchedTaxon"."*Infraspecific_rank_2",
|
1538 |
|
|
"MatchedTaxon"."*Infraspecific_epithet_2_matched",
|
1539 |
|
|
"MatchedTaxon"."*Infraspecific_epithet_2_score",
|
1540 |
|
|
"MatchedTaxon"."*Annotations",
|
1541 |
|
|
"MatchedTaxon"."*Unmatched_terms",
|
1542 |
|
|
"MatchedTaxon"."*Taxonomic_status",
|
1543 |
|
|
"MatchedTaxon"."*Accepted_name",
|
1544 |
|
|
"MatchedTaxon"."*Accepted_name_author",
|
1545 |
|
|
"MatchedTaxon"."*Accepted_name_rank",
|
1546 |
|
|
"MatchedTaxon"."*Accepted_name_url",
|
1547 |
|
|
"MatchedTaxon"."*Accepted_name_species",
|
1548 |
|
|
"MatchedTaxon"."*Accepted_name_family",
|
1549 |
|
|
"MatchedTaxon"."*Selected",
|
1550 |
|
|
"MatchedTaxon"."*Source",
|
1551 |
|
|
"MatchedTaxon"."*Warnings",
|
1552 |
|
|
"MatchedTaxon"."*Accepted_name_lsid",
|
1553 |
|
|
"MatchedTaxon".is_valid_match,
|
1554 |
|
|
"MatchedTaxon".scrubbed_unique_taxon_name,
|
1555 |
14366
|
aaronmk
|
"MatchedTaxon"."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org",
|
1556 |
14310
|
aaronmk
|
"MatchedTaxon"."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1557 |
14366
|
aaronmk
|
"MatchedTaxon"."matched~Name[_no_author]___@TNRS__@vegpath.org",
|
1558 |
14310
|
aaronmk
|
"MatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1559 |
|
|
"MatchedTaxon".matched_has_accepted,
|
1560 |
14366
|
aaronmk
|
"MatchedTaxon"."Accepted_family__@TNRS__@vegpath.org",
|
1561 |
14279
|
aaronmk
|
"MatchedTaxon"."__accepted_{genus,specific_epithet}",
|
1562 |
|
|
"MatchedTaxon"."[accepted_]genus__@DwC__@vegpath.org",
|
1563 |
|
|
"MatchedTaxon"."[accepted_]specificEpithet__@DwC__@vegpath.org",
|
1564 |
14366
|
aaronmk
|
"MatchedTaxon"."Accepted_species[_binomial]__@TNRS__@vegpath.org",
|
1565 |
|
|
"MatchedTaxon"."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1566 |
14279
|
aaronmk
|
"MatchedTaxon".__accepted_infraspecific_label,
|
1567 |
|
|
"MatchedTaxon"."__accepted_infraspecific_{rank,epithet}",
|
1568 |
|
|
"MatchedTaxon"."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1569 |
|
|
"MatchedTaxon"."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
|
1570 |
|
|
"MatchedTaxon"."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1571 |
14366
|
aaronmk
|
"MatchedTaxon"."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org",
|
1572 |
14310
|
aaronmk
|
"MatchedTaxon"."[scrubbed_]taxonRank__@DwC__@vegpath.org",
|
1573 |
|
|
"MatchedTaxon"."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
|
1574 |
|
|
"MatchedTaxon"."[scrubbed_]genus__@DwC__@vegpath.org",
|
1575 |
|
|
"MatchedTaxon"."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
|
1576 |
|
|
"MatchedTaxon"."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1577 |
14366
|
aaronmk
|
"MatchedTaxon"."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1578 |
14310
|
aaronmk
|
"MatchedTaxon"."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1579 |
|
|
"MatchedTaxon"."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
|
1580 |
|
|
"MatchedTaxon"."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1581 |
|
|
"MatchedTaxon"."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
|
1582 |
|
|
"MatchedTaxon"."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1583 |
13853
|
aaronmk
|
"MatchedTaxon"."taxonomicStatus",
|
1584 |
13574
|
aaronmk
|
"MatchedTaxon".accepted_morphospecies_binomial
|
1585 |
|
|
FROM "MatchedTaxon"
|
1586 |
14279
|
aaronmk
|
WHERE "MatchedTaxon".is_valid_match;
|
1587 |
10395
|
aaronmk
|
|
1588 |
|
|
|
1589 |
13574
|
aaronmk
|
ALTER TABLE "TNRS"."ValidMatchedTaxon" OWNER TO bien;
|
1590 |
10395
|
aaronmk
|
|
1591 |
|
|
--
|
1592 |
13574
|
aaronmk
|
-- Name: VIEW "ValidMatchedTaxon"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1593 |
10395
|
aaronmk
|
--
|
1594 |
|
|
|
1595 |
13574
|
aaronmk
|
COMMENT ON VIEW "ValidMatchedTaxon" IS '
|
1596 |
|
|
to update, use * as the column list
|
1597 |
|
|
';
|
1598 |
10395
|
aaronmk
|
|
1599 |
|
|
|
1600 |
|
|
--
|
1601 |
10786
|
aaronmk
|
-- Name: batch; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
1602 |
|
|
--
|
1603 |
|
|
|
1604 |
|
|
CREATE TABLE batch (
|
1605 |
|
|
id text NOT NULL,
|
1606 |
|
|
id_by_time text,
|
1607 |
|
|
time_submitted timestamp with time zone DEFAULT now(),
|
1608 |
|
|
client_version text
|
1609 |
|
|
);
|
1610 |
|
|
|
1611 |
|
|
|
1612 |
|
|
ALTER TABLE "TNRS".batch OWNER TO bien;
|
1613 |
|
|
|
1614 |
|
|
--
|
1615 |
|
|
-- Name: batch_download_settings; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
1616 |
|
|
--
|
1617 |
|
|
|
1618 |
|
|
CREATE TABLE batch_download_settings (
|
1619 |
|
|
id text NOT NULL,
|
1620 |
|
|
"E-mail" text,
|
1621 |
|
|
"Id" text,
|
1622 |
|
|
"Job type" text,
|
1623 |
|
|
"Contains Id" boolean,
|
1624 |
|
|
"Start time" text,
|
1625 |
|
|
"Finish time" text,
|
1626 |
|
|
"TNRS version" text,
|
1627 |
|
|
"Sources selected" text,
|
1628 |
|
|
"Match threshold" double precision,
|
1629 |
|
|
"Classification" text,
|
1630 |
|
|
"Allow partial matches?" boolean,
|
1631 |
|
|
"Sort by source" boolean,
|
1632 |
|
|
"Constrain by higher taxonomy" boolean
|
1633 |
|
|
);
|
1634 |
|
|
|
1635 |
|
|
|
1636 |
|
|
ALTER TABLE "TNRS".batch_download_settings OWNER TO bien;
|
1637 |
|
|
|
1638 |
|
|
--
|
1639 |
|
|
-- Name: TABLE batch_download_settings; Type: COMMENT; Schema: TNRS; Owner: bien
|
1640 |
|
|
--
|
1641 |
|
|
|
1642 |
13579
|
aaronmk
|
COMMENT ON TABLE batch_download_settings IS '
|
1643 |
|
|
stores data from http://tnrs.iplantcollaborative.org/TNRSapp.html > Submit List > results section > Download settings > settings.txt
|
1644 |
|
|
';
|
1645 |
10786
|
aaronmk
|
|
1646 |
|
|
|
1647 |
|
|
--
|
1648 |
|
|
-- Name: client_version; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
1649 |
|
|
--
|
1650 |
|
|
|
1651 |
|
|
CREATE TABLE client_version (
|
1652 |
|
|
id text NOT NULL,
|
1653 |
|
|
global_rev integer NOT NULL,
|
1654 |
|
|
"/lib/tnrs.py rev" integer,
|
1655 |
|
|
"/bin/tnrs_db rev" integer
|
1656 |
|
|
);
|
1657 |
|
|
|
1658 |
|
|
|
1659 |
|
|
ALTER TABLE "TNRS".client_version OWNER TO bien;
|
1660 |
|
|
|
1661 |
|
|
--
|
1662 |
|
|
-- Name: TABLE client_version; Type: COMMENT; Schema: TNRS; Owner: bien
|
1663 |
|
|
--
|
1664 |
|
|
|
1665 |
13579
|
aaronmk
|
COMMENT ON TABLE client_version IS '
|
1666 |
|
|
contains svn revisions
|
1667 |
|
|
';
|
1668 |
10786
|
aaronmk
|
|
1669 |
|
|
|
1670 |
|
|
--
|
1671 |
|
|
-- Name: COLUMN client_version.global_rev; Type: COMMENT; Schema: TNRS; Owner: bien
|
1672 |
|
|
--
|
1673 |
|
|
|
1674 |
13579
|
aaronmk
|
COMMENT ON COLUMN client_version.global_rev IS '
|
1675 |
|
|
from `svn info .` > Last Changed Rev
|
1676 |
|
|
';
|
1677 |
10786
|
aaronmk
|
|
1678 |
|
|
|
1679 |
|
|
--
|
1680 |
|
|
-- Name: COLUMN client_version."/lib/tnrs.py rev"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1681 |
|
|
--
|
1682 |
|
|
|
1683 |
13579
|
aaronmk
|
COMMENT ON COLUMN client_version."/lib/tnrs.py rev" IS '
|
1684 |
|
|
from `svn info lib/tnrs.py` > Last Changed Rev
|
1685 |
|
|
';
|
1686 |
10786
|
aaronmk
|
|
1687 |
|
|
|
1688 |
|
|
--
|
1689 |
|
|
-- Name: COLUMN client_version."/bin/tnrs_db rev"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1690 |
|
|
--
|
1691 |
|
|
|
1692 |
13579
|
aaronmk
|
COMMENT ON COLUMN client_version."/bin/tnrs_db rev" IS '
|
1693 |
|
|
from `svn info bin/tnrs_db` > Last Changed Rev
|
1694 |
|
|
';
|
1695 |
10786
|
aaronmk
|
|
1696 |
|
|
|
1697 |
|
|
--
|
1698 |
13867
|
aaronmk
|
-- Name: taxon_match_input; Type: VIEW; Schema: TNRS; Owner: bien
|
1699 |
|
|
--
|
1700 |
|
|
|
1701 |
|
|
CREATE VIEW taxon_match_input AS
|
1702 |
14279
|
aaronmk
|
SELECT taxon_match."*Name_number" AS "Name_number",
|
1703 |
|
|
taxon_match."*Name_submitted" AS "Name_submitted",
|
1704 |
|
|
taxon_match."*Overall_score" AS "Overall_score",
|
1705 |
|
|
taxon_match."*Name_matched" AS "Name_matched",
|
1706 |
|
|
taxon_match."*Name_matched_rank" AS "Name_matched_rank",
|
1707 |
|
|
taxon_match."*Name_score" AS "Name_score",
|
1708 |
|
|
taxon_match."*Name_matched_author" AS "Name_matched_author",
|
1709 |
|
|
taxon_match."*Name_matched_url" AS "Name_matched_url",
|
1710 |
|
|
taxon_match."*Author_matched" AS "Author_matched",
|
1711 |
|
|
taxon_match."*Author_score" AS "Author_score",
|
1712 |
|
|
taxon_match."*Family_matched" AS "Family_matched",
|
1713 |
|
|
taxon_match."*Family_score" AS "Family_score",
|
1714 |
|
|
taxon_match."*Name_matched_accepted_family" AS "Name_matched_accepted_family",
|
1715 |
|
|
taxon_match."*Genus_matched" AS "Genus_matched",
|
1716 |
|
|
taxon_match."*Genus_score" AS "Genus_score",
|
1717 |
|
|
taxon_match."*Specific_epithet_matched" AS "Specific_epithet_matched",
|
1718 |
|
|
taxon_match."*Specific_epithet_score" AS "Specific_epithet_score",
|
1719 |
|
|
taxon_match."*Infraspecific_rank" AS "Infraspecific_rank",
|
1720 |
|
|
taxon_match."*Infraspecific_epithet_matched" AS "Infraspecific_epithet_matched",
|
1721 |
|
|
taxon_match."*Infraspecific_epithet_score" AS "Infraspecific_epithet_score",
|
1722 |
|
|
taxon_match."*Infraspecific_rank_2" AS "Infraspecific_rank_2",
|
1723 |
|
|
taxon_match."*Infraspecific_epithet_2_matched" AS "Infraspecific_epithet_2_matched",
|
1724 |
|
|
taxon_match."*Infraspecific_epithet_2_score" AS "Infraspecific_epithet_2_score",
|
1725 |
|
|
taxon_match."*Annotations" AS "Annotations",
|
1726 |
|
|
taxon_match."*Unmatched_terms" AS "Unmatched_terms",
|
1727 |
|
|
taxon_match."*Taxonomic_status" AS "Taxonomic_status",
|
1728 |
|
|
taxon_match."*Accepted_name" AS "Accepted_name",
|
1729 |
|
|
taxon_match."*Accepted_name_author" AS "Accepted_name_author",
|
1730 |
|
|
taxon_match."*Accepted_name_rank" AS "Accepted_name_rank",
|
1731 |
|
|
taxon_match."*Accepted_name_url" AS "Accepted_name_url",
|
1732 |
|
|
taxon_match."*Accepted_name_species" AS "Accepted_name_species",
|
1733 |
|
|
taxon_match."*Accepted_name_family" AS "Accepted_name_family",
|
1734 |
|
|
taxon_match."*Selected" AS "Selected",
|
1735 |
|
|
taxon_match."*Source" AS "Source",
|
1736 |
|
|
taxon_match."*Warnings" AS "Warnings",
|
1737 |
|
|
taxon_match."*Accepted_name_lsid" AS "Accepted_name_lsid"
|
1738 |
13867
|
aaronmk
|
FROM taxon_match;
|
1739 |
|
|
|
1740 |
|
|
|
1741 |
|
|
ALTER TABLE "TNRS".taxon_match_input OWNER TO bien;
|
1742 |
|
|
|
1743 |
|
|
--
|
1744 |
|
|
-- Name: taxon_match_input__copy_to; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
1745 |
|
|
--
|
1746 |
|
|
|
1747 |
|
|
CREATE TABLE taxon_match_input__copy_to (
|
1748 |
|
|
"Name_number" integer,
|
1749 |
|
|
"Name_submitted" text,
|
1750 |
|
|
"Overall_score" double precision,
|
1751 |
|
|
"Name_matched" text,
|
1752 |
|
|
"Name_matched_rank" text,
|
1753 |
|
|
"Name_score" double precision,
|
1754 |
|
|
"Name_matched_author" text,
|
1755 |
|
|
"Name_matched_url" text,
|
1756 |
|
|
"Author_matched" text,
|
1757 |
|
|
"Author_score" double precision,
|
1758 |
|
|
"Family_matched" text,
|
1759 |
|
|
"Family_score" double precision,
|
1760 |
|
|
"Name_matched_accepted_family" text,
|
1761 |
|
|
"Genus_matched" text,
|
1762 |
|
|
"Genus_score" double precision,
|
1763 |
|
|
"Specific_epithet_matched" text,
|
1764 |
|
|
"Specific_epithet_score" double precision,
|
1765 |
|
|
"Infraspecific_rank" text,
|
1766 |
|
|
"Infraspecific_epithet_matched" text,
|
1767 |
|
|
"Infraspecific_epithet_score" double precision,
|
1768 |
|
|
"Infraspecific_rank_2" text,
|
1769 |
|
|
"Infraspecific_epithet_2_matched" text,
|
1770 |
|
|
"Infraspecific_epithet_2_score" double precision,
|
1771 |
|
|
"Annotations" text,
|
1772 |
|
|
"Unmatched_terms" text,
|
1773 |
|
|
"Taxonomic_status" text,
|
1774 |
|
|
"Accepted_name" text,
|
1775 |
|
|
"Accepted_name_author" text,
|
1776 |
|
|
"Accepted_name_rank" text,
|
1777 |
|
|
"Accepted_name_url" text,
|
1778 |
|
|
"Accepted_name_species" text,
|
1779 |
|
|
"Accepted_name_family" text,
|
1780 |
|
|
"Selected" text,
|
1781 |
|
|
"Source" text,
|
1782 |
|
|
"Warnings" text,
|
1783 |
|
|
"Accepted_name_lsid" text
|
1784 |
|
|
);
|
1785 |
|
|
|
1786 |
|
|
|
1787 |
|
|
ALTER TABLE "TNRS".taxon_match_input__copy_to OWNER TO bien;
|
1788 |
|
|
|
1789 |
|
|
--
|
1790 |
13574
|
aaronmk
|
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: VIEW; Schema: TNRS; Owner: bien
|
1791 |
|
|
--
|
1792 |
|
|
|
1793 |
|
|
CREATE VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" AS
|
1794 |
14279
|
aaronmk
|
SELECT taxon_match."*Name_submitted" AS scrubbed_unique_taxon_name,
|
1795 |
|
|
taxon_match."*Name_matched_rank" AS scrubbed_taxon_rank,
|
1796 |
|
|
COALESCE(taxon_match."*Name_matched_accepted_family", taxon_match."*Family_matched") AS scrubbed_family,
|
1797 |
|
|
taxon_match."*Genus_matched" AS scrubbed_genus,
|
1798 |
|
|
taxon_match."*Specific_epithet_matched" AS scrubbed_specific_epithet,
|
1799 |
|
|
taxon_match."*Infraspecific_rank" AS scrubbed_infraspecific_rank,
|
1800 |
|
|
taxon_match."*Infraspecific_epithet_matched" AS scrubbed_infraspecific_epithet,
|
1801 |
|
|
taxon_match."*Name_matched_author" AS scrubbed_author,
|
1802 |
|
|
taxon_match."*Name_matched" AS scrubbed_taxon_name_no_author,
|
1803 |
|
|
(taxon_match."*Name_matched" || COALESCE((' '::text || taxon_match."*Name_matched_author"), ''::text)) AS scrubbed_taxon_name_with_author
|
1804 |
13867
|
aaronmk
|
FROM taxon_match;
|
1805 |
13574
|
aaronmk
|
|
1806 |
|
|
|
1807 |
|
|
ALTER TABLE "TNRS"."taxon_scrub.scrubbed_unique_taxon_name.*" OWNER TO bien;
|
1808 |
|
|
|
1809 |
|
|
--
|
1810 |
|
|
-- Name: VIEW "taxon_scrub.scrubbed_unique_taxon_name.*"; Type: COMMENT; Schema: TNRS; Owner: bien
|
1811 |
|
|
--
|
1812 |
|
|
|
1813 |
13579
|
aaronmk
|
COMMENT ON VIEW "taxon_scrub.scrubbed_unique_taxon_name.*" IS '
|
1814 |
13853
|
aaronmk
|
to modify:
|
1815 |
|
|
SELECT util.recreate_view(''"TNRS"."taxon_scrub.scrubbed_unique_taxon_name.*"'', $$
|
1816 |
|
|
SELECT __
|
1817 |
|
|
$$);
|
1818 |
|
|
|
1819 |
13579
|
aaronmk
|
scrubbed_family: Name_matched_accepted_family was missing from the TNRS results at one point, so Family_matched is used as a workaround to populate this. the workaround is for *accepted names only*, as no opinion names do not have an Accepted_name_family to prepend to the scrubbed name to parse.
|
1820 |
|
|
';
|
1821 |
13574
|
aaronmk
|
|
1822 |
|
|
|
1823 |
|
|
--
|
1824 |
|
|
-- Name: taxon_scrub; Type: VIEW; Schema: TNRS; Owner: bien
|
1825 |
|
|
--
|
1826 |
|
|
|
1827 |
|
|
CREATE VIEW taxon_scrub AS
|
1828 |
13853
|
aaronmk
|
SELECT "ValidMatchedTaxon".scrubbed_unique_taxon_name,
|
1829 |
14279
|
aaronmk
|
"ValidMatchedTaxon".batch,
|
1830 |
|
|
"ValidMatchedTaxon".match_num,
|
1831 |
|
|
"ValidMatchedTaxon"."*Name_number",
|
1832 |
|
|
"ValidMatchedTaxon"."*Name_submitted",
|
1833 |
|
|
"ValidMatchedTaxon"."*Overall_score",
|
1834 |
|
|
"ValidMatchedTaxon"."*Name_matched",
|
1835 |
|
|
"ValidMatchedTaxon"."*Name_matched_rank",
|
1836 |
|
|
"ValidMatchedTaxon"."*Name_score",
|
1837 |
|
|
"ValidMatchedTaxon"."*Name_matched_author",
|
1838 |
|
|
"ValidMatchedTaxon"."*Name_matched_url",
|
1839 |
|
|
"ValidMatchedTaxon"."*Author_matched",
|
1840 |
|
|
"ValidMatchedTaxon"."*Author_score",
|
1841 |
|
|
"ValidMatchedTaxon"."*Family_matched",
|
1842 |
|
|
"ValidMatchedTaxon"."*Family_score",
|
1843 |
|
|
"ValidMatchedTaxon"."*Name_matched_accepted_family",
|
1844 |
|
|
"ValidMatchedTaxon"."*Genus_matched",
|
1845 |
|
|
"ValidMatchedTaxon"."*Genus_score",
|
1846 |
|
|
"ValidMatchedTaxon"."*Specific_epithet_matched",
|
1847 |
|
|
"ValidMatchedTaxon"."*Specific_epithet_score",
|
1848 |
|
|
"ValidMatchedTaxon"."*Infraspecific_rank",
|
1849 |
|
|
"ValidMatchedTaxon"."*Infraspecific_epithet_matched",
|
1850 |
|
|
"ValidMatchedTaxon"."*Infraspecific_epithet_score",
|
1851 |
|
|
"ValidMatchedTaxon"."*Infraspecific_rank_2",
|
1852 |
|
|
"ValidMatchedTaxon"."*Infraspecific_epithet_2_matched",
|
1853 |
|
|
"ValidMatchedTaxon"."*Infraspecific_epithet_2_score",
|
1854 |
|
|
"ValidMatchedTaxon"."*Annotations",
|
1855 |
|
|
"ValidMatchedTaxon"."*Unmatched_terms",
|
1856 |
|
|
"ValidMatchedTaxon"."*Taxonomic_status",
|
1857 |
|
|
"ValidMatchedTaxon"."*Accepted_name",
|
1858 |
|
|
"ValidMatchedTaxon"."*Accepted_name_author",
|
1859 |
|
|
"ValidMatchedTaxon"."*Accepted_name_rank",
|
1860 |
|
|
"ValidMatchedTaxon"."*Accepted_name_url",
|
1861 |
|
|
"ValidMatchedTaxon"."*Accepted_name_species",
|
1862 |
|
|
"ValidMatchedTaxon"."*Accepted_name_family",
|
1863 |
|
|
"ValidMatchedTaxon"."*Selected",
|
1864 |
|
|
"ValidMatchedTaxon"."*Source",
|
1865 |
|
|
"ValidMatchedTaxon"."*Warnings",
|
1866 |
|
|
"ValidMatchedTaxon"."*Accepted_name_lsid",
|
1867 |
|
|
"ValidMatchedTaxon".is_valid_match,
|
1868 |
14366
|
aaronmk
|
"ValidMatchedTaxon"."[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org",
|
1869 |
14310
|
aaronmk
|
"ValidMatchedTaxon"."[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1870 |
14366
|
aaronmk
|
"ValidMatchedTaxon"."matched~Name[_no_author]___@TNRS__@vegpath.org",
|
1871 |
14310
|
aaronmk
|
"ValidMatchedTaxon"."[matched_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1872 |
|
|
"ValidMatchedTaxon".matched_has_accepted,
|
1873 |
14366
|
aaronmk
|
"ValidMatchedTaxon"."Accepted_family__@TNRS__@vegpath.org",
|
1874 |
14279
|
aaronmk
|
"ValidMatchedTaxon"."__accepted_{genus,specific_epithet}",
|
1875 |
|
|
"ValidMatchedTaxon"."[accepted_]genus__@DwC__@vegpath.org",
|
1876 |
|
|
"ValidMatchedTaxon"."[accepted_]specificEpithet__@DwC__@vegpath.org",
|
1877 |
14366
|
aaronmk
|
"ValidMatchedTaxon"."Accepted_species[_binomial]__@TNRS__@vegpath.org",
|
1878 |
|
|
"ValidMatchedTaxon"."[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1879 |
14279
|
aaronmk
|
"ValidMatchedTaxon".__accepted_infraspecific_label,
|
1880 |
|
|
"ValidMatchedTaxon"."__accepted_infraspecific_{rank,epithet}",
|
1881 |
|
|
"ValidMatchedTaxon"."[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1882 |
|
|
"ValidMatchedTaxon"."[accepted_]infraspecificEpithet__@DwC__@vegpath.org",
|
1883 |
|
|
"ValidMatchedTaxon"."[accepted_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1884 |
14366
|
aaronmk
|
"ValidMatchedTaxon"."[scrubbed_]taxonomicStatus__@DwC__@vegpath.org",
|
1885 |
14310
|
aaronmk
|
"ValidMatchedTaxon"."[scrubbed_]taxonRank__@DwC__@vegpath.org",
|
1886 |
|
|
"ValidMatchedTaxon"."[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org",
|
1887 |
|
|
"ValidMatchedTaxon"."[scrubbed_]genus__@DwC__@vegpath.org",
|
1888 |
|
|
"ValidMatchedTaxon"."[scrubbed_]specificEpithet__@DwC__@vegpath.org",
|
1889 |
|
|
"ValidMatchedTaxon"."[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1890 |
14366
|
aaronmk
|
"ValidMatchedTaxon"."[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org",
|
1891 |
14310
|
aaronmk
|
"ValidMatchedTaxon"."[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org",
|
1892 |
|
|
"ValidMatchedTaxon"."[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org",
|
1893 |
|
|
"ValidMatchedTaxon"."[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org",
|
1894 |
|
|
"ValidMatchedTaxon"."[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org",
|
1895 |
|
|
"ValidMatchedTaxon"."[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org",
|
1896 |
13853
|
aaronmk
|
"ValidMatchedTaxon"."taxonomicStatus",
|
1897 |
|
|
"ValidMatchedTaxon".accepted_morphospecies_binomial,
|
1898 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank,
|
1899 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_family,
|
1900 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus,
|
1901 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet,
|
1902 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_rank,
|
1903 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_infraspecific_epithet,
|
1904 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_author,
|
1905 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_no_author,
|
1906 |
|
|
"taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_with_author,
|
1907 |
13574
|
aaronmk
|
CASE
|
1908 |
14279
|
aaronmk
|
WHEN ("taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank = 'family'::text) THEN concat_ws(' '::text, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_family, "ValidMatchedTaxon"."*Unmatched_terms")
|
1909 |
|
|
WHEN ("taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_rank = 'genus'::text) THEN concat_ws(' '::text, "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_taxon_name_no_author, "ValidMatchedTaxon"."*Unmatched_terms")
|
1910 |
13574
|
aaronmk
|
ELSE (("taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_genus || ' '::text) || "taxon_scrub.scrubbed_unique_taxon_name.*".scrubbed_specific_epithet)
|
1911 |
|
|
END AS scrubbed_morphospecies_binomial
|
1912 |
|
|
FROM ("ValidMatchedTaxon"
|
1913 |
|
|
LEFT JOIN "taxon_scrub.scrubbed_unique_taxon_name.*" USING (scrubbed_unique_taxon_name));
|
1914 |
|
|
|
1915 |
|
|
|
1916 |
|
|
ALTER TABLE "TNRS".taxon_scrub OWNER TO bien;
|
1917 |
|
|
|
1918 |
|
|
--
|
1919 |
|
|
-- Name: VIEW taxon_scrub; Type: COMMENT; Schema: TNRS; Owner: bien
|
1920 |
|
|
--
|
1921 |
|
|
|
1922 |
|
|
COMMENT ON VIEW taxon_scrub IS '
|
1923 |
|
|
to modify:
|
1924 |
13853
|
aaronmk
|
SELECT util.recreate_view(''"TNRS".taxon_scrub'', $$
|
1925 |
|
|
SELECT __
|
1926 |
13574
|
aaronmk
|
$$);
|
1927 |
|
|
';
|
1928 |
|
|
|
1929 |
|
|
|
1930 |
|
|
--
|
1931 |
10395
|
aaronmk
|
-- Name: ~Source.map; Type: TABLE; Schema: TNRS; Owner: bien; Tablespace:
|
1932 |
|
|
--
|
1933 |
|
|
|
1934 |
|
|
CREATE TABLE "~Source.map" (
|
1935 |
|
|
"from" text NOT NULL,
|
1936 |
|
|
"to" text,
|
1937 |
|
|
filter text,
|
1938 |
|
|
notes text
|
1939 |
|
|
);
|
1940 |
|
|
|
1941 |
|
|
|
1942 |
|
|
ALTER TABLE "TNRS"."~Source.map" OWNER TO bien;
|
1943 |
|
|
|
1944 |
|
|
--
|
1945 |
|
|
-- Data for Name: Source; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
1946 |
|
|
--
|
1947 |
|
|
|
1948 |
10786
|
aaronmk
|
COPY "Source" ("*row_num", "sourceType", "datasetURL") FROM stdin;
|
1949 |
14279
|
aaronmk
|
1 aggregator http://[TNRS_dev_server].iplantcollaborative.org/TNRSapp.html
|
1950 |
10395
|
aaronmk
|
\.
|
1951 |
|
|
|
1952 |
|
|
|
1953 |
|
|
--
|
1954 |
10786
|
aaronmk
|
-- Data for Name: batch; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
1955 |
|
|
--
|
1956 |
|
|
|
1957 |
|
|
COPY batch (id, id_by_time, time_submitted, client_version) FROM stdin;
|
1958 |
14366
|
aaronmk
|
2014-07-26 21:26:21.824011-07 2014-07-26 21:26:21.824011-07 2014-07-26 21:26:21.824011-07 \N
|
1959 |
10786
|
aaronmk
|
\.
|
1960 |
|
|
|
1961 |
|
|
|
1962 |
|
|
--
|
1963 |
|
|
-- Data for Name: batch_download_settings; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
1964 |
|
|
--
|
1965 |
|
|
|
1966 |
|
|
COPY batch_download_settings (id, "E-mail", "Id", "Job type", "Contains Id", "Start time", "Finish time", "TNRS version", "Sources selected", "Match threshold", "Classification", "Allow partial matches?", "Sort by source", "Constrain by higher taxonomy") FROM stdin;
|
1967 |
|
|
\.
|
1968 |
|
|
|
1969 |
|
|
|
1970 |
|
|
--
|
1971 |
|
|
-- Data for Name: client_version; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
1972 |
|
|
--
|
1973 |
|
|
|
1974 |
|
|
COPY client_version (id, global_rev, "/lib/tnrs.py rev", "/bin/tnrs_db rev") FROM stdin;
|
1975 |
|
|
\.
|
1976 |
|
|
|
1977 |
|
|
|
1978 |
|
|
--
|
1979 |
13867
|
aaronmk
|
-- Data for Name: taxon_match; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
1980 |
5423
|
aaronmk
|
--
|
1981 |
|
|
|
1982 |
14366
|
aaronmk
|
COPY taxon_match (batch, match_num, "*Name_number", "*Name_submitted", "*Overall_score", "*Name_matched", "*Name_matched_rank", "*Name_score", "*Name_matched_author", "*Name_matched_url", "*Author_matched", "*Author_score", "*Family_matched", "*Family_score", "*Name_matched_accepted_family", "*Genus_matched", "*Genus_score", "*Specific_epithet_matched", "*Specific_epithet_score", "*Infraspecific_rank", "*Infraspecific_epithet_matched", "*Infraspecific_epithet_score", "*Infraspecific_rank_2", "*Infraspecific_epithet_2_matched", "*Infraspecific_epithet_2_score", "*Annotations", "*Unmatched_terms", "*Taxonomic_status", "*Accepted_name", "*Accepted_name_author", "*Accepted_name_rank", "*Accepted_name_url", "*Accepted_name_species", "*Accepted_name_family", "*Selected", "*Source", "*Warnings", "*Accepted_name_lsid", is_valid_match, scrubbed_unique_taxon_name, "[parsed_]morphospecies[_suffix]__@Brad__.morphosp@vegpath.org", "[matched_]species[_binomial]~(-Accepted_-)__@TNRS__@vegpath.org", "matched~Name[_no_author]___@TNRS__@vegpath.org", "[matched_]scientificName[_with_author]__@DwC__@vegpath.org", matched_has_accepted, "Accepted_family__@TNRS__@vegpath.org", "Accepted_species[_binomial]__@TNRS__@vegpath.org", "__accepted_{genus,specific_epithet}", "[accepted_]genus__@DwC__@vegpath.org", "[accepted_]specificEpithet__@DwC__@vegpath.org", "[accepted_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org", __accepted_infraspecific_label, "__accepted_infraspecific_{rank,epithet}", "[accepted_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org", "[accepted_]infraspecificEpithet__@DwC__@vegpath.org", "[accepted_]scientificName[_with_author]__@DwC__@vegpath.org", "[scrubbed_]taxonomicStatus__@DwC__@vegpath.org", "[scrubbed_]taxonRank__@DwC__@vegpath.org", "[scrubbed_]family~(-Accepted_-)__@TNRS__@vegpath.org", "[scrubbed_]genus__@DwC__@vegpath.org", "[scrubbed_]specificEpithet__@DwC__@vegpath.org", "[scrubbed_]species[_binom]~(-Accepted_-)__@TNRS__@vegpath.org", "[scrubbed_]morphospecies[_binomial]__@Brad__.TNRS@vegpath.org", "[scrubbed_]Infraspecific_rank[_abbr]__@TNRS__@vegpath.org", "[scrubbed_]infraspecificEpithet__@DwC__@vegpath.org", "[scrubbed_]name[_no_author]~(-Accepted_-)__@TNRS__@vegpath.org", "[scrubbed_]author~(-Accepted_-)__@TNRS__@vegpath.org", "[scrubbed_]scientificName[_with_author]__@DwC__@vegpath.org") FROM stdin;
|
1983 |
|
|
2014-07-26 21:26:21.824011-07 0 0 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 \N http://www.theplantlist.org/1.1/browse/A/Compositae/ \N \N Compositae 1 \N \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Accepted Compositae \N family http://www.theplantlist.org/1.1/browse/A/Compositae/ \N \N true tpl [Ambiguous match] \N t Compositae indet. sp.1 \N Compositae Compositae t Compositae \N \N \N \N Compositae indet. sp.1 \N \N \N \N Compositae accepted family Compositae \N \N \N Compositae indet. sp.1 \N \N Compositae \N Compositae
|
1984 |
|
|
2014-07-26 21:26:21.824011-07 1 0 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 \N \N \N \N Compositae 1 \N \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Accepted Compositae \N family \N \N \N false tpl [Ambiguous match] \N t Compositae indet. sp.1 \N Compositae Compositae t Compositae \N \N \N \N Compositae indet. sp.1 \N \N \N \N Compositae accepted family Compositae \N \N \N Compositae indet. sp.1 \N \N Compositae \N Compositae
|
1985 |
|
|
2014-07-26 21:26:21.824011-07 2 0 Compositae indet. sp.1 0.900000000000000022 Compositae family 1 Giseke http://www.tropicos.org/Name/50255940 \N \N Compositae 1 Compositae \N \N \N \N \N \N \N \N \N \N \N indet. sp.1 Synonym Asteraceae Bercht. & J. Presl family http://www.tropicos.org/Name/50307371 \N Asteraceae false tropicos \N t Asteraceae Bercht. & J. Presl indet. sp.1 \N Compositae Compositae Giseke t Asteraceae \N \N \N \N Asteraceae indet. sp.1 \N \N \N \N Asteraceae Bercht. & J. Presl accepted family Asteraceae \N \N \N Asteraceae indet. sp.1 \N \N Asteraceae Bercht. & J. Presl Asteraceae Bercht. & J. Presl
|
1986 |
|
|
2014-07-26 21:26:21.824011-07 3 1 Fabaceae Boyle#6500 0.839999999999999969 Fagaceae family 0.939999999999999947 \N ;http://plants.usda.gov/java/nameSearch \N \N Fagaceae 0.880000000000000004 \N \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fagaceae \N family ;http://plants.usda.gov/java/nameSearch \N \N true tpl;usda \N f Fagaceae Boyle#6500 \N Fagaceae Fagaceae t Fagaceae \N \N \N \N Fagaceae Boyle#6500 \N \N \N \N Fagaceae accepted family Fagaceae \N \N \N Fagaceae Boyle#6500 \N \N Fagaceae \N Fagaceae
|
1987 |
|
|
2014-07-26 21:26:21.824011-07 4 1 Fabaceae Boyle#6500 0.900000000000000022 Fabaceae family 1 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae false tropicos \N t Fabaceae Lindl. Boyle#6500 \N Fabaceae Fabaceae Lindl. t Fabaceae \N \N \N \N Fabaceae Boyle#6500 \N \N \N \N Fabaceae Lindl. accepted family Fabaceae \N \N \N Fabaceae Boyle#6500 \N \N Fabaceae Lindl. Fabaceae Lindl.
|
1988 |
|
|
2014-07-26 21:26:21.824011-07 5 1 Fabaceae Boyle#6500 0.839999999999999969 Fagaceae family 0.939999999999999947 Dumort. http://www.tropicos.org/Name/42000062 \N \N Fagaceae 0.880000000000000004 Fagaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fagaceae Dumort. family http://www.tropicos.org/Name/42000062 \N Fagaceae false tropicos \N f Fagaceae Dumort. Boyle#6500 \N Fagaceae Fagaceae Dumort. t Fagaceae \N \N \N \N Fagaceae Boyle#6500 \N \N \N \N Fagaceae Dumort. accepted family Fagaceae \N \N \N Fagaceae Boyle#6500 \N \N Fagaceae Dumort. Fagaceae Dumort.
|
1989 |
|
|
2014-07-26 21:26:21.824011-07 6 1 Fabaceae Boyle#6500 0.67000000000000004 Ficaceae family 0.770000000000000018 Bercht. & J. Presl http://www.tropicos.org/Name/100353631 \N \N Ficaceae 0.75 Ficaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 No opinion \N \N \N \N \N \N false tropicos \N f Ficaceae Bercht. & J. Presl Boyle#6500 \N Ficaceae Ficaceae Bercht. & J. Presl f \N \N \N \N \N \N \N \N \N \N \N no opinion family Ficaceae \N \N \N Ficaceae Boyle#6500 \N \N Ficaceae Bercht. & J. Presl Ficaceae Bercht. & J. Presl
|
1990 |
|
|
2014-07-26 21:26:21.824011-07 7 1 Fabaceae Boyle#6500 0.67000000000000004 Fucaceae family 0.770000000000000018 \N http://www.tropicos.org/Name/100371040 \N \N Fucaceae 0.75 Fucaceae \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 No opinion \N \N \N \N \N \N false tropicos \N f Fucaceae Boyle#6500 \N Fucaceae Fucaceae f \N \N \N \N \N \N \N \N \N \N \N no opinion family Fucaceae \N \N \N Fucaceae Boyle#6500 \N \N Fucaceae \N Fucaceae
|
1991 |
|
|
2014-07-26 21:26:21.824011-07 8 1 Fabaceae Boyle#6500 0.900000000000000022 Fabaceae family 1 \N http://plants.usda.gov/java/nameSearch \N \N Fabaceae 1 \N \N \N \N \N \N \N \N \N \N \N \N Boyle#6500 Accepted Fabaceae \N family http://plants.usda.gov/java/nameSearch \N \N false usda \N t Fabaceae Boyle#6500 \N Fabaceae Fabaceae t Fabaceae \N \N \N \N Fabaceae Boyle#6500 \N \N \N \N Fabaceae accepted family Fabaceae \N \N \N Fabaceae Boyle#6500 \N \N Fabaceae \N Fabaceae
|
1992 |
|
|
2014-07-26 21:26:21.824011-07 9 2 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 \N http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Accepted Inga \N genus http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N Fabaceae true tpl;usda \N t Fabaceae Inga "fuzzy leaf" \N Inga Inga t Fabaceae \N \N Inga \N Inga "fuzzy leaf" \N \N \N \N Inga accepted genus Fabaceae Inga \N \N Inga "fuzzy leaf" \N \N Inga \N Inga
|
1993 |
|
|
2014-07-26 21:26:21.824011-07 10 2 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae false tropicos \N t Fabaceae Inga Mill. "fuzzy leaf" \N Inga Inga Mill. t Fabaceae \N \N Inga \N Inga "fuzzy leaf" \N \N \N \N Inga Mill. accepted genus Fabaceae Inga \N \N Inga "fuzzy leaf" \N \N Inga Mill. Inga Mill.
|
1994 |
|
|
2014-07-26 21:26:21.824011-07 11 2 Fabaceae Inga "fuzzy leaf" 0.900000000000000022 Inga genus 1 Scop. http://www.tropicos.org/Name/50215121 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N "fuzzy leaf" Illegitimate \N \N \N \N \N \N false tropicos \N t Fabaceae Inga Scop. "fuzzy leaf" \N Inga Inga Scop. f \N \N \N \N \N \N \N \N \N \N \N illegitimate genus Fabaceae Inga \N \N Inga "fuzzy leaf" \N \N Inga Scop. Inga Scop.
|
1995 |
|
|
2014-07-26 21:26:21.824011-07 12 3 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 \N http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Accepted Inga \N genus http://www.theplantlist.org/1.1/browse/A/Leguminosae/Inga/;http://plants.usda.gov/java/profile?symbol=INGA \N Fabaceae true tpl;usda \N t Fabaceae Inga sp.3 \N Inga Inga t Fabaceae \N \N Inga \N Inga sp.3 \N \N \N \N Inga accepted genus Fabaceae Inga \N \N Inga sp.3 \N \N Inga \N Inga
|
1996 |
|
|
2014-07-26 21:26:21.824011-07 13 3 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 Mill. http://www.tropicos.org/Name/40031040 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Accepted Inga Mill. genus http://www.tropicos.org/Name/40031040 \N Fabaceae false tropicos \N t Fabaceae Inga Mill. sp.3 \N Inga Inga Mill. t Fabaceae \N \N Inga \N Inga sp.3 \N \N \N \N Inga Mill. accepted genus Fabaceae Inga \N \N Inga sp.3 \N \N Inga Mill. Inga Mill.
|
1997 |
|
|
2014-07-26 21:26:21.824011-07 14 3 Fabaceae Inga sp.3 0.900000000000000022 Inga genus 1 Scop. http://www.tropicos.org/Name/50215121 \N \N Fabaceae 1 Fabaceae Inga 1 \N \N \N \N \N \N \N \N \N sp.3 Illegitimate \N \N \N \N \N \N false tropicos \N t Fabaceae Inga Scop. sp.3 \N Inga Inga Scop. f \N \N \N \N \N \N \N \N \N \N \N illegitimate genus Fabaceae Inga \N \N Inga sp.3 \N \N Inga Scop. Inga Scop.
|
1998 |
|
|
2014-07-26 21:26:21.824011-07 15 4 Fabaceae unknown #2 0.839999999999999969 Fagaceae family 0.939999999999999947 \N ;http://plants.usda.gov/java/nameSearch \N \N Fagaceae 0.880000000000000004 \N \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fagaceae \N family ;http://plants.usda.gov/java/nameSearch \N \N true tpl;usda \N f Fagaceae unknown #2 \N Fagaceae Fagaceae t Fagaceae \N \N \N \N Fagaceae unknown #2 \N \N \N \N Fagaceae accepted family Fagaceae \N \N \N Fagaceae unknown #2 \N \N Fagaceae \N Fagaceae
|
1999 |
|
|
2014-07-26 21:26:21.824011-07 16 4 Fabaceae unknown #2 0.900000000000000022 Fabaceae family 1 Lindl. http://www.tropicos.org/Name/42000184 \N \N Fabaceae 1 Fabaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fabaceae Lindl. family http://www.tropicos.org/Name/42000184 \N Fabaceae false tropicos \N t Fabaceae Lindl. unknown #2 \N Fabaceae Fabaceae Lindl. t Fabaceae \N \N \N \N Fabaceae unknown #2 \N \N \N \N Fabaceae Lindl. accepted family Fabaceae \N \N \N Fabaceae unknown #2 \N \N Fabaceae Lindl. Fabaceae Lindl.
|
2000 |
|
|
2014-07-26 21:26:21.824011-07 17 4 Fabaceae unknown #2 0.839999999999999969 Fagaceae family 0.939999999999999947 Dumort. http://www.tropicos.org/Name/42000062 \N \N Fagaceae 0.880000000000000004 Fagaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fagaceae Dumort. family http://www.tropicos.org/Name/42000062 \N Fagaceae false tropicos \N f Fagaceae Dumort. unknown #2 \N Fagaceae Fagaceae Dumort. t Fagaceae \N \N \N \N Fagaceae unknown #2 \N \N \N \N Fagaceae Dumort. accepted family Fagaceae \N \N \N Fagaceae unknown #2 \N \N Fagaceae Dumort. Fagaceae Dumort.
|
2001 |
|
|
2014-07-26 21:26:21.824011-07 18 4 Fabaceae unknown #2 0.67000000000000004 Ficaceae family 0.770000000000000018 Bercht. & J. Presl http://www.tropicos.org/Name/100353631 \N \N Ficaceae 0.75 Ficaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 No opinion \N \N \N \N \N \N false tropicos \N f Ficaceae Bercht. & J. Presl unknown #2 \N Ficaceae Ficaceae Bercht. & J. Presl f \N \N \N \N \N \N \N \N \N \N \N no opinion family Ficaceae \N \N \N Ficaceae unknown #2 \N \N Ficaceae Bercht. & J. Presl Ficaceae Bercht. & J. Presl
|
2002 |
|
|
2014-07-26 21:26:21.824011-07 19 4 Fabaceae unknown #2 0.67000000000000004 Fucaceae family 0.770000000000000018 \N http://www.tropicos.org/Name/100371040 \N \N Fucaceae 0.75 Fucaceae \N \N \N \N \N \N \N \N \N \N \N unknown #2 No opinion \N \N \N \N \N \N false tropicos \N f Fucaceae unknown #2 \N Fucaceae Fucaceae f \N \N \N \N \N \N \N \N \N \N \N no opinion family Fucaceae \N \N \N Fucaceae unknown #2 \N \N Fucaceae \N Fucaceae
|
2003 |
|
|
2014-07-26 21:26:21.824011-07 20 4 Fabaceae unknown #2 0.900000000000000022 Fabaceae family 1 \N http://plants.usda.gov/java/nameSearch \N \N Fabaceae 1 \N \N \N \N \N \N \N \N \N \N \N \N unknown #2 Accepted Fabaceae \N family http://plants.usda.gov/java/nameSearch \N \N false usda \N t Fabaceae unknown #2 \N Fabaceae Fabaceae t Fabaceae \N \N \N \N Fabaceae unknown #2 \N \N \N \N Fabaceae accepted family Fabaceae \N \N \N Fabaceae unknown #2 \N \N Fabaceae \N Fabaceae
|
2004 |
|
|
2014-07-26 21:26:21.824011-07 21 5 Fam_indet. Boyle#6501 0 No suitable matches found. \N 0 \N \N \N 0 \N 0 \N \N 0 \N 0 \N \N 0 \N \N 0 \N \N \N \N \N \N \N \N \N true \N \N f \N \N \N \N \N f \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N \N
|
2005 |
|
|
2014-07-26 21:26:21.824011-07 22 6 Poa annua 1 Poa annua species 1 L. http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN \N \N \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN Poa annua Poaceae true tpl;tropicos;usda \N t Poaceae Poa annua L. \N Poa annua Poa annua Poa annua L. t Poaceae Poa annua {Poa,annua} Poa annua Poa annua \N \N \N \N Poa annua L. accepted species Poaceae Poa annua Poa annua Poa annua \N annua Poa annua L. Poa annua L.
|
2006 |
|
|
2014-07-26 21:26:21.824011-07 23 6 Poa annua 1 Poa annua species 1 Cham. & Schltdl. http://www.theplantlist.org/tpl1.1/record/kew-435195 \N \N \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Synonym Poa infirma Kunth species http://www.theplantlist.org/tpl1.1/record/kew-436189 Poa infirma Poaceae false tpl \N t Poaceae Poa infirma Kunth \N Poa annua Poa annua Poa annua Cham. & Schltdl. t Poaceae Poa infirma {Poa,infirma} Poa infirma Poa infirma \N \N \N \N Poa infirma Kunth accepted species Poaceae Poa infirma Poa infirma Poa infirma \N infirma Poa infirma Kunth Poa infirma Kunth
|
2007 |
|
|
2014-07-26 21:26:21.824011-07 24 7 Poa annua L. 1 Poa annua species 1 L. http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN L. 1 \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Accepted Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194;http://www.tropicos.org/Name/25509881;http://plants.usda.gov/java/profile?symbol=POAN Poa annua Poaceae true tpl;tropicos;usda \N t Poaceae Poa annua L. \N Poa annua Poa annua Poa annua L. t Poaceae Poa annua {Poa,annua} Poa annua Poa annua \N \N \N \N Poa annua L. accepted species Poaceae Poa annua Poa annua Poa annua \N annua Poa annua L. Poa annua L.
|
2008 |
|
|
2014-07-26 21:26:21.824011-07 25 7 Poa annua L. 0.800000000000000044 Poa annua species 1 Cham. & Schltdl. http://www.theplantlist.org/tpl1.1/record/kew-435195 Cham. & Schltdl. 0 \N \N Poaceae Poa 1 annua 1 \N \N \N \N \N \N \N \N Synonym Poa infirma Kunth species http://www.theplantlist.org/tpl1.1/record/kew-436189 Poa infirma Poaceae false tpl \N t Poaceae Poa infirma Kunth \N Poa annua Poa annua Poa annua Cham. & Schltdl. t Poaceae Poa infirma {Poa,infirma} Poa infirma Poa infirma \N \N \N \N Poa infirma Kunth accepted species Poaceae Poa infirma Poa infirma Poa infirma \N infirma Poa infirma Kunth Poa infirma Kunth
|
2009 |
|
|
2014-07-26 21:26:21.824011-07 26 8 Poa annua fo. lanuginosa 1 Poa annua fo. lanuginosa fo. 1 Sennen http://www.theplantlist.org/tpl1.1/record/tro-50267771 \N \N \N \N \N Poa 1 annua 1 fo. lanuginosa 1 \N \N \N \N \N Synonym Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194 Poa annua Poaceae true tpl \N t Poaceae Poa annua L. \N Poa annua Poa annua fo. lanuginosa Poa annua fo. lanuginosa Sennen t Poaceae Poa annua {Poa,annua} Poa annua Poa annua \N \N \N \N Poa annua L. accepted species Poaceae Poa annua Poa annua Poa annua \N annua Poa annua L. Poa annua L.
|
2010 |
|
|
2014-07-26 21:26:21.824011-07 27 8 Poa annua fo. lanuginosa 1 Poa annua fo. lanuginosa forma 1 Sennen http://www.tropicos.org/Name/50267771 \N \N \N \N Poaceae Poa 1 annua 1 fo. lanuginosa 1 \N \N \N \N \N Synonym Poa annua var. annua \N variety http://www.tropicos.org/Name/25517736 Poa annua Poaceae false tropicos \N t Poaceae Poa annua var. annua \N Poa annua Poa annua fo. lanuginosa Poa annua fo. lanuginosa Sennen t Poaceae Poa annua {Poa,annua} Poa annua Poa annua var. annua {var.,annua} var. annua Poa annua var. annua accepted variety Poaceae Poa annua Poa annua Poa annua var. annua Poa annua var. annua \N Poa annua var. annua
|
2011 |
|
|
2014-07-26 21:26:21.824011-07 28 9 Poa annua ssp. exilis 1 Poa annua subsp. exilis subspecies 1 (Tomm. ex Freyn) Asch. & Graebn. http://www.tropicos.org/Name/50063800 \N \N \N \N Poaceae Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae true tropicos \N t Poaceae Poa infirma Kunth \N Poa annua Poa annua subsp. exilis Poa annua subsp. exilis (Tomm. ex Freyn) Asch. & Graebn. t Poaceae Poa infirma {Poa,infirma} Poa infirma Poa infirma \N \N \N \N Poa infirma Kunth accepted species Poaceae Poa infirma Poa infirma Poa infirma \N infirma Poa infirma Kunth Poa infirma Kunth
|
2012 |
|
|
2014-07-26 21:26:21.824011-07 29 9 Poa annua ssp. exilis 0.959999999999999964 Poa annua var. exilis variety 0.959999999999999964 Tomm. ex Freyn http://www.tropicos.org/Name/25547854 \N \N \N \N Poaceae Poa 1 annua 1 var. exilis 0.699999999999999956 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae false tropicos \N t Poaceae Poa infirma Kunth \N Poa annua Poa annua var. exilis Poa annua var. exilis Tomm. ex Freyn t Poaceae Poa infirma {Poa,infirma} Poa infirma Poa infirma \N \N \N \N Poa infirma Kunth accepted species Poaceae Poa infirma Poa infirma Poa infirma \N infirma Poa infirma Kunth Poa infirma Kunth
|
2013 |
|
|
2014-07-26 21:26:21.824011-07 30 10 Poa annua subsp. exilis 1 Poa annua subsp. exilis subsp. 1 (Tomm. ex Freyn.) Asch. & Graebn. http://www.theplantlist.org/tpl1.1/record/kew-435202 \N \N \N \N \N Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.theplantlist.org/tpl1.1/record/kew-436189 Poa infirma Poaceae true tpl \N t Poaceae Poa infirma Kunth \N Poa annua Poa annua subsp. exilis Poa annua subsp. exilis (Tomm. ex Freyn.) Asch. & Graebn. t Poaceae Poa infirma {Poa,infirma} Poa infirma Poa infirma \N \N \N \N Poa infirma Kunth accepted species Poaceae Poa infirma Poa infirma Poa infirma \N infirma Poa infirma Kunth Poa infirma Kunth
|
2014 |
|
|
2014-07-26 21:26:21.824011-07 31 10 Poa annua subsp. exilis 1 Poa annua subsp. exilis subspecies 1 (Tomm. ex Freyn) Asch. & Graebn. http://www.tropicos.org/Name/50063800 \N \N \N \N Poaceae Poa 1 annua 1 subsp. exilis 1 \N \N \N \N \N Synonym Poa infirma Kunth species http://www.tropicos.org/Name/25514158 Poa infirma Poaceae false tropicos \N t Poaceae Poa infirma Kunth \N Poa annua Poa annua subsp. exilis Poa annua subsp. exilis (Tomm. ex Freyn) Asch. & Graebn. t Poaceae Poa infirma {Poa,infirma} Poa infirma Poa infirma \N \N \N \N Poa infirma Kunth accepted species Poaceae Poa infirma Poa infirma Poa infirma \N infirma Poa infirma Kunth Poa infirma Kunth
|
2015 |
|
|
2014-07-26 21:26:21.824011-07 32 11 Poa annua subvar. minima 1 Poa annua subvar. minima subvariety 1 (Schur) Asch. & Graebn. http://www.tropicos.org/Name/50158097 \N \N \N \N Poaceae Poa 1 annua 1 subvar. minima 1 \N \N \N \N \N Accepted Poa annua subvar. minima (Schur) Asch. & Graebn. subvariety http://www.tropicos.org/Name/50158097 Poa annua Poaceae true tropicos \N t Poaceae Poa annua subvar. minima (Schur) Asch. & Graebn. \N Poa annua Poa annua subvar. minima Poa annua subvar. minima (Schur) Asch. & Graebn. t Poaceae Poa annua {Poa,annua} Poa annua Poa annua subvar. minima {subvar.,minima} subvar. minima Poa annua subvar. minima (Schur) Asch. & Graebn. accepted subvariety Poaceae Poa annua Poa annua Poa annua subvar. annua Poa annua subvar. minima (Schur) Asch. & Graebn. Poa annua subvar. minima (Schur) Asch. & Graebn.
|
2016 |
|
|
2014-07-26 21:26:21.824011-07 33 12 Poa annua var. eriolepis 1 Poa annua var. eriolepis var. 1 ̉ۡ.Desv. http://www.theplantlist.org/tpl1.1/record/kew-435206 \N \N \N \N \N Poa 1 annua 1 var. eriolepis 1 \N \N \N \N \N Synonym Poa annua L. species http://www.theplantlist.org/tpl1.1/record/kew-435194 Poa annua Poaceae true tpl \N t Poaceae Poa annua L. \N Poa annua Poa annua var. eriolepis Poa annua var. eriolepis ̉ۡ.Desv. t Poaceae Poa annua {Poa,annua} Poa annua Poa annua \N \N \N \N Poa annua L. accepted species Poaceae Poa annua Poa annua Poa annua \N annua Poa annua L. Poa annua L.
|
2017 |
|
|
2014-07-26 21:26:21.824011-07 34 12 Poa annua var. eriolepis 1 Poa annua var. eriolepis variety 1 E. Desv. http://www.tropicos.org/Name/50119145 \N \N \N \N Poaceae Poa 1 annua 1 var. eriolepis 1 \N \N \N \N \N Synonym Poa annua L. species http://www.tropicos.org/Name/25509881 Poa annua Poaceae false tropicos \N t Poaceae Poa annua L. \N Poa annua Poa annua var. eriolepis Poa annua var. eriolepis E. Desv. t Poaceae Poa annua {Poa,annua} Poa annua Poa annua \N \N \N \N Poa annua L. accepted species Poaceae Poa annua Poa annua Poa annua \N annua Poa annua L. Poa annua L.
|
2018 |
|
|
2014-07-26 21:26:21.824011-07 35 13 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subsp. 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.theplantlist.org/tpl1.1/record/tro-6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subsp. http://www.theplantlist.org/tpl1.1/record/tro-6303627 Silene scouleri Caryophyllaceae true tpl [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea Silene scouleri Silene scouleri subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire t Caryophyllaceae Silene scouleri {Silene,scouleri} Silene scouleri Silene scouleri subsp. pringlei {subsp.,pringlei} subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire accepted subsp. Caryophyllaceae Silene scouleri Silene scouleri Silene scouleri subsp. scouleri Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
2019 |
|
|
2014-07-26 21:26:21.824011-07 36 13 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae false tropicos [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea Silene scouleri Silene scouleri subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire t Caryophyllaceae Silene scouleri {Silene,scouleri} Silene scouleri Silene scouleri subsp. pringlei {subsp.,pringlei} subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire accepted subspecies Caryophyllaceae Silene scouleri Silene scouleri Silene scouleri subsp. scouleri Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
2020 |
|
|
2014-07-26 21:26:21.824011-07 37 13 Silene scouleri Hook. subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://plants.usda.gov/java/profile?symbol=SISCP \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://plants.usda.gov/java/profile?symbol=SISCP Silene scouleri Caryophyllaceae false usda [Partial match] \N t Caryophyllaceae Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea Silene scouleri Silene scouleri subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire t Caryophyllaceae Silene scouleri {Silene,scouleri} Silene scouleri Silene scouleri ssp. pringlei {ssp.,pringlei} ssp. pringlei Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire accepted subspecies Caryophyllaceae Silene scouleri Silene scouleri Silene scouleri ssp. scouleri Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
2021 |
|
|
2014-07-26 21:26:21.824011-07 38 14 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subsp. 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.theplantlist.org/tpl1.1/record/tro-6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subsp. http://www.theplantlist.org/tpl1.1/record/tro-6303627 Silene scouleri Caryophyllaceae true tpl [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea Silene scouleri Silene scouleri subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire t Caryophyllaceae Silene scouleri {Silene,scouleri} Silene scouleri Silene scouleri subsp. pringlei {subsp.,pringlei} subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire accepted subsp. Caryophyllaceae Silene scouleri Silene scouleri Silene scouleri subsp. scouleri Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
2022 |
|
|
2014-07-26 21:26:21.824011-07 39 14 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://www.tropicos.org/Name/6303627 \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://www.tropicos.org/Name/6303627 Silene scouleri Caryophyllaceae false tropicos [Partial match] \N t Caryophyllaceae Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea Silene scouleri Silene scouleri subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire t Caryophyllaceae Silene scouleri {Silene,scouleri} Silene scouleri Silene scouleri subsp. pringlei {subsp.,pringlei} subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire accepted subspecies Caryophyllaceae Silene scouleri Silene scouleri Silene scouleri subsp. scouleri Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
2023 |
|
|
2014-07-26 21:26:21.824011-07 40 14 Silene scouleri subsp. pringlei var. grisea C.L. Hitchc. & Maguire 0.770000000000000018 Silene scouleri subsp. pringlei subspecies 0.770000000000000018 (S. Watson) C.L. Hitchc. & Maguire http://plants.usda.gov/java/profile?symbol=SISCP \N \N \N \N Caryophyllaceae Silene 1 scouleri 1 subsp. pringlei 1 \N \N \N \N var. grisea Accepted Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire subspecies http://plants.usda.gov/java/profile?symbol=SISCP Silene scouleri Caryophyllaceae false usda [Partial match] \N t Caryophyllaceae Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire var. grisea Silene scouleri Silene scouleri subsp. pringlei Silene scouleri subsp. pringlei (S. Watson) C.L. Hitchc. & Maguire t Caryophyllaceae Silene scouleri {Silene,scouleri} Silene scouleri Silene scouleri ssp. pringlei {ssp.,pringlei} ssp. pringlei Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire accepted subspecies Caryophyllaceae Silene scouleri Silene scouleri Silene scouleri ssp. scouleri Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire Silene scouleri ssp. pringlei (S. Watson) C.L. Hitchc. & Maguire
|
2024 |
5917
|
aaronmk
|
\.
|
2025 |
5423
|
aaronmk
|
|
2026 |
|
|
|
2027 |
5917
|
aaronmk
|
--
|
2028 |
13867
|
aaronmk
|
-- Data for Name: taxon_match_input__copy_to; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
2029 |
|
|
--
|
2030 |
|
|
|
2031 |
|
|
COPY taxon_match_input__copy_to ("Name_number", "Name_submitted", "Overall_score", "Name_matched", "Name_matched_rank", "Name_score", "Name_matched_author", "Name_matched_url", "Author_matched", "Author_score", "Family_matched", "Family_score", "Name_matched_accepted_family", "Genus_matched", "Genus_score", "Specific_epithet_matched", "Specific_epithet_score", "Infraspecific_rank", "Infraspecific_epithet_matched", "Infraspecific_epithet_score", "Infraspecific_rank_2", "Infraspecific_epithet_2_matched", "Infraspecific_epithet_2_score", "Annotations", "Unmatched_terms", "Taxonomic_status", "Accepted_name", "Accepted_name_author", "Accepted_name_rank", "Accepted_name_url", "Accepted_name_species", "Accepted_name_family", "Selected", "Source", "Warnings", "Accepted_name_lsid") FROM stdin;
|
2032 |
|
|
\.
|
2033 |
|
|
|
2034 |
|
|
|
2035 |
|
|
--
|
2036 |
10395
|
aaronmk
|
-- Data for Name: ~Source.map; Type: TABLE DATA; Schema: TNRS; Owner: bien
|
2037 |
|
|
--
|
2038 |
|
|
|
2039 |
|
|
COPY "~Source.map" ("from", "to", filter, notes) FROM stdin;
|
2040 |
|
|
row_num *row_num \N \N
|
2041 |
|
|
:aggregator sourceType \N \N
|
2042 |
14279
|
aaronmk
|
:http://[TNRS_dev_server].iplantcollaborative.org/TNRSapp.html datasetURL \N \N
|
2043 |
10395
|
aaronmk
|
\.
|
2044 |
|
|
|
2045 |
|
|
|
2046 |
|
|
--
|
2047 |
|
|
-- Name: Source_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2048 |
|
|
--
|
2049 |
|
|
|
2050 |
|
|
ALTER TABLE ONLY "Source"
|
2051 |
|
|
ADD CONSTRAINT "Source_pkey" PRIMARY KEY ("*row_num");
|
2052 |
|
|
|
2053 |
|
|
|
2054 |
|
|
--
|
2055 |
10786
|
aaronmk
|
-- Name: batch_download_settings_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2056 |
|
|
--
|
2057 |
|
|
|
2058 |
|
|
ALTER TABLE ONLY batch_download_settings
|
2059 |
|
|
ADD CONSTRAINT batch_download_settings_pkey PRIMARY KEY (id);
|
2060 |
|
|
|
2061 |
|
|
|
2062 |
|
|
--
|
2063 |
|
|
-- Name: batch_id_by_time_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2064 |
|
|
--
|
2065 |
|
|
|
2066 |
|
|
ALTER TABLE ONLY batch
|
2067 |
|
|
ADD CONSTRAINT batch_id_by_time_key UNIQUE (id_by_time);
|
2068 |
|
|
|
2069 |
|
|
|
2070 |
|
|
--
|
2071 |
|
|
-- Name: batch_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2072 |
|
|
--
|
2073 |
|
|
|
2074 |
|
|
ALTER TABLE ONLY batch
|
2075 |
|
|
ADD CONSTRAINT batch_pkey PRIMARY KEY (id);
|
2076 |
|
|
|
2077 |
|
|
|
2078 |
|
|
--
|
2079 |
|
|
-- Name: client_version_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2080 |
|
|
--
|
2081 |
|
|
|
2082 |
|
|
ALTER TABLE ONLY client_version
|
2083 |
|
|
ADD CONSTRAINT client_version_pkey PRIMARY KEY (id);
|
2084 |
|
|
|
2085 |
|
|
|
2086 |
|
|
--
|
2087 |
13870
|
aaronmk
|
-- Name: taxon_match_pkey; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2088 |
5917
|
aaronmk
|
--
|
2089 |
5423
|
aaronmk
|
|
2090 |
13867
|
aaronmk
|
ALTER TABLE ONLY taxon_match
|
2091 |
13870
|
aaronmk
|
ADD CONSTRAINT taxon_match_pkey PRIMARY KEY (batch, match_num);
|
2092 |
5917
|
aaronmk
|
|
2093 |
14279
|
aaronmk
|
ALTER TABLE taxon_match CLUSTER ON taxon_match_pkey;
|
2094 |
5917
|
aaronmk
|
|
2095 |
14279
|
aaronmk
|
|
2096 |
5423
|
aaronmk
|
--
|
2097 |
10395
|
aaronmk
|
-- Name: ~Source.map_from_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2098 |
|
|
--
|
2099 |
|
|
|
2100 |
|
|
ALTER TABLE ONLY "~Source.map"
|
2101 |
|
|
ADD CONSTRAINT "~Source.map_from_key" UNIQUE ("from");
|
2102 |
|
|
|
2103 |
|
|
|
2104 |
|
|
--
|
2105 |
|
|
-- Name: ~Source.map_to_key; Type: CONSTRAINT; Schema: TNRS; Owner: bien; Tablespace:
|
2106 |
|
|
--
|
2107 |
|
|
|
2108 |
|
|
ALTER TABLE ONLY "~Source.map"
|
2109 |
|
|
ADD CONSTRAINT "~Source.map_to_key" UNIQUE ("to");
|
2110 |
|
|
|
2111 |
|
|
|
2112 |
|
|
--
|
2113 |
13574
|
aaronmk
|
-- Name: batch_client_version_idx; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
2114 |
5917
|
aaronmk
|
--
|
2115 |
|
|
|
2116 |
13574
|
aaronmk
|
CREATE INDEX batch_client_version_idx ON batch USING btree (client_version);
|
2117 |
5917
|
aaronmk
|
|
2118 |
|
|
|
2119 |
|
|
--
|
2120 |
14279
|
aaronmk
|
-- Name: taxon_best_match__valid_match; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
2121 |
|
|
--
|
2122 |
|
|
|
2123 |
|
|
CREATE INDEX taxon_best_match__valid_match ON taxon_match USING btree ("*Name_submitted") WHERE (("*Selected" = 'true'::text) AND is_valid_match);
|
2124 |
|
|
|
2125 |
|
|
|
2126 |
|
|
--
|
2127 |
13870
|
aaronmk
|
-- Name: taxon_match_Name_submitted_idx; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
2128 |
13590
|
aaronmk
|
--
|
2129 |
|
|
|
2130 |
14279
|
aaronmk
|
CREATE INDEX "taxon_match_Name_submitted_idx" ON taxon_match USING btree ("*Name_submitted");
|
2131 |
13590
|
aaronmk
|
|
2132 |
|
|
|
2133 |
|
|
--
|
2134 |
14279
|
aaronmk
|
-- Name: taxon_match__one_selected_match; Type: INDEX; Schema: TNRS; Owner: bien; Tablespace:
|
2135 |
13574
|
aaronmk
|
--
|
2136 |
|
|
|
2137 |
14279
|
aaronmk
|
CREATE UNIQUE INDEX taxon_match__one_selected_match ON taxon_match USING btree (batch, "*Name_number") WHERE ("*Selected" = 'true'::text);
|
2138 |
13574
|
aaronmk
|
|
2139 |
|
|
|
2140 |
|
|
--
|
2141 |
10786
|
aaronmk
|
-- Name: batch__fill; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2142 |
|
|
--
|
2143 |
|
|
|
2144 |
|
|
CREATE TRIGGER batch__fill BEFORE INSERT OR UPDATE ON batch FOR EACH ROW EXECUTE PROCEDURE batch__fill();
|
2145 |
|
|
|
2146 |
|
|
|
2147 |
|
|
--
|
2148 |
10395
|
aaronmk
|
-- Name: map_filter_insert; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2149 |
|
|
--
|
2150 |
|
|
|
2151 |
|
|
CREATE TRIGGER map_filter_insert BEFORE INSERT ON "~Source.map" FOR EACH ROW EXECUTE PROCEDURE util.map_filter_insert();
|
2152 |
|
|
|
2153 |
|
|
ALTER TABLE "~Source.map" DISABLE TRIGGER map_filter_insert;
|
2154 |
|
|
|
2155 |
|
|
|
2156 |
|
|
--
|
2157 |
13870
|
aaronmk
|
-- Name: taxon_match__batch_begin; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2158 |
13867
|
aaronmk
|
--
|
2159 |
|
|
|
2160 |
13870
|
aaronmk
|
CREATE TRIGGER taxon_match__batch_begin BEFORE INSERT ON taxon_match_input__copy_to FOR EACH STATEMENT EXECUTE PROCEDURE taxon_match__batch_begin();
|
2161 |
13867
|
aaronmk
|
|
2162 |
|
|
|
2163 |
|
|
--
|
2164 |
13870
|
aaronmk
|
-- Name: taxon_match__fill; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2165 |
13574
|
aaronmk
|
--
|
2166 |
|
|
|
2167 |
13870
|
aaronmk
|
CREATE TRIGGER taxon_match__fill BEFORE INSERT OR UPDATE ON taxon_match FOR EACH ROW EXECUTE PROCEDURE taxon_match__fill();
|
2168 |
13574
|
aaronmk
|
|
2169 |
|
|
|
2170 |
|
|
--
|
2171 |
14279
|
aaronmk
|
-- Name: taxon_match__fill_derived; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2172 |
|
|
--
|
2173 |
|
|
|
2174 |
|
|
CREATE TRIGGER taxon_match__fill_derived BEFORE INSERT OR UPDATE ON taxon_match FOR EACH ROW EXECUTE PROCEDURE taxon_match__fill_derived();
|
2175 |
|
|
|
2176 |
|
|
|
2177 |
|
|
--
|
2178 |
13870
|
aaronmk
|
-- Name: taxon_match__match_num__fill; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2179 |
13579
|
aaronmk
|
--
|
2180 |
|
|
|
2181 |
13870
|
aaronmk
|
CREATE TRIGGER taxon_match__match_num__fill BEFORE INSERT ON taxon_match FOR EACH ROW EXECUTE PROCEDURE taxon_match__match_num__fill();
|
2182 |
13579
|
aaronmk
|
|
2183 |
|
|
|
2184 |
|
|
--
|
2185 |
13870
|
aaronmk
|
-- Name: taxon_match_input__copy_to__insert; Type: TRIGGER; Schema: TNRS; Owner: bien
|
2186 |
5917
|
aaronmk
|
--
|
2187 |
|
|
|
2188 |
13870
|
aaronmk
|
CREATE TRIGGER taxon_match_input__copy_to__insert BEFORE INSERT ON taxon_match_input__copy_to FOR EACH ROW EXECUTE PROCEDURE taxon_match_input__copy_to__insert();
|
2189 |
5917
|
aaronmk
|
|
2190 |
|
|
|
2191 |
|
|
--
|
2192 |
10786
|
aaronmk
|
-- Name: batch_client_version_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien
|
2193 |
|
|
--
|
2194 |
|
|
|
2195 |
|
|
ALTER TABLE ONLY batch
|
2196 |
|
|
ADD CONSTRAINT batch_client_version_fkey FOREIGN KEY (client_version) REFERENCES client_version(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
2197 |
|
|
|
2198 |
|
|
|
2199 |
|
|
--
|
2200 |
|
|
-- Name: batch_download_settings_id_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien
|
2201 |
|
|
--
|
2202 |
|
|
|
2203 |
|
|
ALTER TABLE ONLY batch_download_settings
|
2204 |
|
|
ADD CONSTRAINT batch_download_settings_id_fkey FOREIGN KEY (id) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
2205 |
|
|
|
2206 |
|
|
|
2207 |
|
|
--
|
2208 |
13870
|
aaronmk
|
-- Name: taxon_match_batch_fkey; Type: FK CONSTRAINT; Schema: TNRS; Owner: bien
|
2209 |
10786
|
aaronmk
|
--
|
2210 |
|
|
|
2211 |
13867
|
aaronmk
|
ALTER TABLE ONLY taxon_match
|
2212 |
13870
|
aaronmk
|
ADD CONSTRAINT taxon_match_batch_fkey FOREIGN KEY (batch) REFERENCES batch(id) ON UPDATE CASCADE ON DELETE CASCADE;
|
2213 |
10786
|
aaronmk
|
|
2214 |
|
|
|
2215 |
|
|
--
|
2216 |
10395
|
aaronmk
|
-- Name: TNRS; Type: ACL; Schema: -; Owner: bien
|
2217 |
|
|
--
|
2218 |
|
|
|
2219 |
|
|
REVOKE ALL ON SCHEMA "TNRS" FROM PUBLIC;
|
2220 |
|
|
REVOKE ALL ON SCHEMA "TNRS" FROM bien;
|
2221 |
|
|
GRANT ALL ON SCHEMA "TNRS" TO bien;
|
2222 |
|
|
GRANT USAGE ON SCHEMA "TNRS" TO bien_read;
|
2223 |
|
|
|
2224 |
|
|
|
2225 |
|
|
--
|
2226 |
13867
|
aaronmk
|
-- Name: taxon_match; Type: ACL; Schema: TNRS; Owner: bien
|
2227 |
10395
|
aaronmk
|
--
|
2228 |
|
|
|
2229 |
13867
|
aaronmk
|
REVOKE ALL ON TABLE taxon_match FROM PUBLIC;
|
2230 |
|
|
REVOKE ALL ON TABLE taxon_match FROM bien;
|
2231 |
|
|
GRANT ALL ON TABLE taxon_match TO bien;
|
2232 |
|
|
GRANT SELECT ON TABLE taxon_match TO bien_read;
|
2233 |
10395
|
aaronmk
|
|
2234 |
|
|
|
2235 |
|
|
--
|
2236 |
14279
|
aaronmk
|
-- Name: taxon_best_match; Type: ACL; Schema: TNRS; Owner: bien
|
2237 |
|
|
--
|
2238 |
|
|
|
2239 |
|
|
REVOKE ALL ON TABLE taxon_best_match FROM PUBLIC;
|
2240 |
|
|
REVOKE ALL ON TABLE taxon_best_match FROM bien;
|
2241 |
|
|
GRANT ALL ON TABLE taxon_best_match TO bien;
|
2242 |
|
|
GRANT SELECT ON TABLE taxon_best_match TO bien_read;
|
2243 |
|
|
|
2244 |
|
|
|
2245 |
|
|
--
|
2246 |
13574
|
aaronmk
|
-- Name: MatchedTaxon; Type: ACL; Schema: TNRS; Owner: bien
|
2247 |
|
|
--
|
2248 |
|
|
|
2249 |
|
|
REVOKE ALL ON TABLE "MatchedTaxon" FROM PUBLIC;
|
2250 |
|
|
REVOKE ALL ON TABLE "MatchedTaxon" FROM bien;
|
2251 |
|
|
GRANT ALL ON TABLE "MatchedTaxon" TO bien;
|
2252 |
|
|
GRANT SELECT ON TABLE "MatchedTaxon" TO bien_read;
|
2253 |
|
|
|
2254 |
|
|
|
2255 |
|
|
--
|
2256 |
|
|
-- Name: ValidMatchedTaxon; Type: ACL; Schema: TNRS; Owner: bien
|
2257 |
|
|
--
|
2258 |
|
|
|
2259 |
|
|
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM PUBLIC;
|
2260 |
|
|
REVOKE ALL ON TABLE "ValidMatchedTaxon" FROM bien;
|
2261 |
|
|
GRANT ALL ON TABLE "ValidMatchedTaxon" TO bien;
|
2262 |
|
|
GRANT SELECT ON TABLE "ValidMatchedTaxon" TO bien_read;
|
2263 |
|
|
|
2264 |
|
|
|
2265 |
|
|
--
|
2266 |
14279
|
aaronmk
|
-- Name: taxon_match_input; Type: ACL; Schema: TNRS; Owner: bien
|
2267 |
|
|
--
|
2268 |
|
|
|
2269 |
|
|
REVOKE ALL ON TABLE taxon_match_input FROM PUBLIC;
|
2270 |
|
|
REVOKE ALL ON TABLE taxon_match_input FROM bien;
|
2271 |
|
|
GRANT ALL ON TABLE taxon_match_input TO bien;
|
2272 |
|
|
GRANT SELECT ON TABLE taxon_match_input TO bien_read;
|
2273 |
|
|
|
2274 |
|
|
|
2275 |
|
|
--
|
2276 |
13574
|
aaronmk
|
-- Name: taxon_scrub.scrubbed_unique_taxon_name.*; Type: ACL; Schema: TNRS; Owner: bien
|
2277 |
|
|
--
|
2278 |
|
|
|
2279 |
|
|
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM PUBLIC;
|
2280 |
|
|
REVOKE ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" FROM bien;
|
2281 |
|
|
GRANT ALL ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien;
|
2282 |
|
|
GRANT SELECT ON TABLE "taxon_scrub.scrubbed_unique_taxon_name.*" TO bien_read;
|
2283 |
|
|
|
2284 |
|
|
|
2285 |
|
|
--
|
2286 |
|
|
-- Name: taxon_scrub; Type: ACL; Schema: TNRS; Owner: bien
|
2287 |
|
|
--
|
2288 |
|
|
|
2289 |
|
|
REVOKE ALL ON TABLE taxon_scrub FROM PUBLIC;
|
2290 |
|
|
REVOKE ALL ON TABLE taxon_scrub FROM bien;
|
2291 |
|
|
GRANT ALL ON TABLE taxon_scrub TO bien;
|
2292 |
|
|
GRANT SELECT ON TABLE taxon_scrub TO bien_read;
|
2293 |
|
|
|
2294 |
|
|
|
2295 |
|
|
--
|
2296 |
5423
|
aaronmk
|
-- PostgreSQL database dump complete
|
2297 |
|
|
--
|