moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

inputs/FIA/_archive/: moved FIA_COND_unique, Organism into 2011-10-17/ subdir

inputs/FIA/: Archived no longer used subdirs from BIEN2 export

mappings/VegCore-VegBIEN.csv: subplotID,subplot -> location.sourceaccessioncode: Fixed bug where need /_first to handle the case where both subplotID and subplot are provided

inputs/FIA/FIA_COND_unique/test.xml.ref: Updated now that PLOT, CONDID have been mapped

inputs/FIA/*/map.csv for pre-refresh tables: Added back * before unmapped column names

inputs/FIA/*/map.csv: Replaced . between table and column name with newline, so that table viewers like pgAdmin will display both the table and column name at the left edge of the header cell, rather than displaying only the table name because the column name doesn't fit. This fixes the problem of seeing a bunch of columns whose names all start with a table name, and not knowing what each of them is. It also preserves the ability to see at a glance which table a column is in, which helps in navigating wide tables. Removed * before unmapped terms, because whether a term is mapped is generally obvious from the table name itself.

inputs/input.Makefile: %/.map.csv.last_cleanup: Run fix_line_endings after canon/translate to standardize Python's \r\n line endings back to \n. This prevents issues with mixed line endings because LibreOffice (and probably Excel) treat all cell-internal line endings as \n but row line endings as whatever the file had, while text editors like jEdit translate all line endings to whatever the autodetected line ending is. (This creates spurious line ending diffs when a map spreadsheet containing multiline cells is edited in a text editor.)

mappings/VegCore-VegBIEN.csv: locationID->location.sourceaccessioncode: Removed restriction that this mapping can't occur if geovalidation information is present. The locationID is no longer mapped to the place.sourceaccessioncode, so this filter is not necessary.

inputs/FIA/FIA_COND_unique/create.sql: Fixed bug where need to remove `CREATE TABLE :table AS` at beginning because that is added by the make target