| 1 |
4918
|
aaronmk
|
#!/usr/bin/env python
|
| 2 |
|
|
# A TNRS client
|
| 3 |
4920
|
aaronmk
|
# When using xargs to pass many names, note that xargs will by default split its
|
| 4 |
|
|
# arguments into chunks of 5000. You can change this using the -n option.
|
| 5 |
4918
|
aaronmk
|
# Note that obtaining an actual CSV requires four (!) steps: submit, retrieve,
|
| 6 |
4991
|
aaronmk
|
# prepare download, and download.
|
| 7 |
4918
|
aaronmk
|
|
| 8 |
|
|
import os.path
|
| 9 |
|
|
import sys
|
| 10 |
|
|
|
| 11 |
|
|
sys.path.append(os.path.dirname(__file__)+"/../lib")
|
| 12 |
|
|
|
| 13 |
|
|
import opts
|
| 14 |
5006
|
aaronmk
|
import streams
|
| 15 |
4991
|
aaronmk
|
import tnrs
|
| 16 |
4918
|
aaronmk
|
|
| 17 |
4989
|
aaronmk
|
def main():
|
| 18 |
|
|
# Input
|
| 19 |
|
|
env_names = []
|
| 20 |
|
|
debug = opts.env_flag('debug', False, env_names)
|
| 21 |
14575
|
aaronmk
|
use_tnrs_export = opts.env_flag('use_tnrs_export', True, env_names)
|
| 22 |
5121
|
aaronmk
|
names = sys.argv[1:]
|
| 23 |
|
|
if not names: raise SystemExit('Usage: '+opts.env_usage(env_names, True)
|
| 24 |
|
|
+' '+sys.argv[0]+' name... >out 2>>log')
|
| 25 |
4989
|
aaronmk
|
|
| 26 |
14575
|
aaronmk
|
streams.copy(tnrs.tnrs_request(names, debug,
|
| 27 |
|
|
use_tnrs_export=use_tnrs_export), sys.stdout)
|
| 28 |
4989
|
aaronmk
|
|
| 29 |
4918
|
aaronmk
|
main()
|
