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Name Size Revision Age Author Comment
  Organism 11512 about 11 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: main taxo...
  Plot 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  Source 11396 about 11 years Aaron Marcuse-Kubitza fix: bin/map: put template: comment out the "Pu...
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
  verify 6805 almost 12 years Aaron Marcuse-Kubitza input.Makefile: SVN: add: verify: Also ignore *...
Makefile 27 Bytes 10177 over 11 years Aaron Marcuse-Kubitza inputs/*/: added top-level Makefile which inclu...
import_order.txt 21 Bytes 6395 about 12 years Aaron Marcuse-Kubitza Added inputs/SALVIAS*/Source/, containing refer...
new_terms.csv 7.38 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...
table.run 81 Bytes 10179 over 11 years Aaron Marcuse-Kubitza inputs/*/: added table.run for use by the table...
unmapped_terms.csv 93 Bytes 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...
  • svn:ignore: *

Latest revisions

# Date Author Comment
11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11717 11/21/2013 11:59 AM Aaron Marcuse-Kubitza

inputs/: removed SALVIAS-CSV, because this is a sample datasource which was only there to test the mapping process. it should not be adding records that duplicate SALVIAS, nor should it take up maintenance effort (switching to new-style import, updating to match SALVIAS, etc.).

11512 10/30/2013 09:46 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: main taxondetermination: use [!isoriginal=true] instead of [!isoriginal] so that adding a manual isoriginal field does not prevent this selector from matching

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

10866 09/04/2013 11:06 PM Aaron Marcuse-Kubitza

inputs/*/*/test.xml.ref: updated source.shortname for new datasource name, which now starts out with .new suffix

10242 07/10/2013 10:07 PM Aaron Marcuse-Kubitza

inputs/*/Source/VegBIEN.csv: regenerated for new-style import, which uses a symlink to mappings/VegCore-VegBIEN.csv instead of a custom mapping using the original column names

10209 07/10/2013 02:32 AM Aaron Marcuse-Kubitza

inputs/*/*/map.csv for CSV tables with a row_num column: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table

10199 07/09/2013 04:44 PM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/map.csv: added missing row_num entry, which is needed by the staging table column renaming to make the order of the map.csv columns match the order in the staging table. the staging table column renaming is now used by all Source tables.

10192 07/09/2013 01:04 AM Aaron Marcuse-Kubitza

bugfix: inputs/*/Source/: added missing ./run, which creates the new-style staging tables with the metadata fields as part of the table. this is needed now that these subdirs use installed staging tables instead of metadata-only map.csvs.

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