root := .

include lib/common.Makefile

##### Vars/functions

# Make

SHELL := /bin/bash

# Paths

bin := bin

##### Environment

export PGOPTIONS = --client-min-messages=WARNING

##### General targets

remake: _always clean

	$(MAKE)

# re-run make so that cache of existing files is reset

##### Installation

# public must be installed *after* inputs because some views depend on inputs

# schemas/public/install also tests that a clean public schema will be

# installable by full-database import

install: _always bin/install config/download/live core mysql \

inputs/download/live inputs/install schemas/public/reinstall

	@$(done)

# schemas/public/install would errexit if the public schema already exists

uninstall: _always rm_mysql rm_core ;

reinstall: _always uninstall install ;

##### bin/install: live and test environments

define uutils_install

(mkdir -p ~/software/uutils/; cd ~/software/uutils/; \

svn co http://uutils.googlecode.com/svn/trunk/ .; make install)

@echo $(emph)'reload PATH:'$(endEmph)

@echo 'press Enter'

@echo 'press Ctrl-D'

@echo 'reopen the terminal window'

@echo 'rerun `make install`'

@$(wait)

@false

endef

uutils_install? = $(if $(wildcard ~/software/uutils/),,$(uutils_install))

bin/install: _always

	$(uutils_install?)

	mkdir -p ~/bin

	-ln -s $(realpath bin/make) ~/bin

# ignore errors if file exists

##### Core: VegBIEN DB and dependencies

core: _always $(call forOs,apache python php postgres misc) db

	@$(done)

rm_core: _always rm_db ;

reinstall_core: _always rm_core core ;

##### Apache

apache-Linux: _always

	# Apache 2.4, which comes with Ubuntu 14.04

	-sudo apt-get --yes install apache2

	#-sudo apt-get --yes install libapache2-mod-php5

apache-Darwin: _always ;

##### Python

python-Linux: _always

	-sudo apt-get --yes install python

	-sudo apt-get --yes install python3

	-sudo apt-get --yes install python-dev

	-sudo apt-get --yes install python-dateutil

	-sudo apt-get --yes install python-parallel

	-sudo apt-get --yes install python-profiler

	-sudo apt-get --yes install python-pip

	-sudo apt-get --yes install pymetrics

python-Darwin: _always

	@# Python 2 comes preinstalled

	@echo $(emph)'Installing Python 3.2 on Mac OS X:'$(endEmph)

	@echo 'Download it: http://www.python.org/ftp/python/3.2.3/python-3.2.3-macosx10.6.dmg'

	@echo 'Open the disk image'

	@echo 'Run the installer in it'

	@$(wait)

	@echo $(emph)'Installing python-dateutil on Mac OS X:'$(endEmph)

	@echo 'Download it for Python 2: http://labix.org/download/python-dateutil/python-dateutil-1.5.tar.gz'

	@echo 'Extract the archive'

	@echo 'Change to the directory of the extracted files'

	@echo 'Run python setup.py build'

	@echo 'Run sudo python setup.py install'

	@echo "Run python -c 'import dateutil'"

	@echo 'Download it for Python 3: http://labix.org/download/python-dateutil/python-dateutil-2.0.tar.gz'

	@echo 'Extract the archive'

	@echo 'Change to the directory of the extracted files'

	@echo 'Run python3 setup.py build'

	@echo 'Run sudo python3 setup.py install'

	@echo "Run python3 -c 'import dateutil'"

	@$(wait)

	@echo $(emph)'Installing pip on Mac OS X:'$(endEmph)

	@echo 'Follow the instructions at http://www.pip-installer.org/en/latest/installing.html'

	@$(wait)

##### PHP

php-Linux: _always

	-sudo apt-get --yes install php-http-request

php-Darwin: _always

	@echo $(emph)'Installing PHP PEAR and HTTP_Request on Mac OS X:'$(endEmph)

	@echo 'Download http://pear.php.net/go-pear.phar'

	@echo 'Change to the directory of the downloaded file'

	@echo 'Run php -d detect_unicode=0 go-pear.phar'

	@echo 'Whenever prompted, press Enter to select default options'

	@echo 'Add $$HOME/pear/bin to your $$PATH'

	@echo 'Add $(HOME)/pear/share/pear to your php.ini include_path'

	@echo 'If needed, set $$PHPRC to your php.ini'

	@echo "Run pear install HTTP_Request"

	@echo 'To run a php command: php -c <php.ini-path> ...'

	@$(wait)

##### PostgreSQL

define editPhppgadmin

-sudo patch /etc/phppgadmin/config.inc.php lib/phpPgAdmin.config.inc.php.diff

sudo cp -n /usr/share/phppgadmin/login.php /usr/share/phppgadmin/login.php.old

-sudo patch /usr/share/phppgadmin/login.php lib/phpPgAdmin.login.php.diff

endef

# ignore errors if patch has already been applied

editPhppgadminApacheConf = echo $$'1\n,s/deny from all/allow from all/\nwq'|\

sudo ed --loose-exit-status --verbose /etc/phppgadmin/apache.conf

apacheConf := /etc/apache2/apache2.conf

apacheConfPhppgadminLine := Include /etc/phppgadmin/apache.conf

editApacheConfForPhppgadmin =\

$(if $(shell grep -F "$(apacheConfPhppgadminLine)" $(apacheConf)),,\

$(call sudoAppend,$(apacheConf),\n$(apacheConfPhppgadminLine)))

asBien := sudo -E -u bien

pgVersion = "$$(env minor=1 bin/pg_version)"

linuxPostgresDir := /etc/postgresql/9.3/main

define pg_ctl-Linux

$(asAdmin) /etc/init.d/postgresql $(1)\

# if doesn'\''t work, run `rm $(linuxPostgresDir)/postmaster.pid` and retry

endef

macPostgresDir := /usr/local/var/postgres

define pg_ctl-Darwin

brew services $(1) postgresql\

# if doesn'\''t work, run `rm $(macPostgresDir)/postmaster.pid` and retry

endef

#pg_ctl -D $(macPostgresDir) $(1)

postgres_restart: postgres_restart-$(os) _always ;

postgres_restart-Linux: _always

	@# for some reason, pg_ctl does not work when run inside make

	@echo $(emph)'restart PostgreSQL manually:'$(endEmph)

	@echo '$(call pg_ctl-$(os),restart)'

	@$(wait)

postgres_restart-Darwin: _always

	@# for some reason, pg_ctl does not work when run inside make

	@echo $(emph)'restart PostgreSQL manually:'$(endEmph)

	@echo '$(call pg_ctl-$(os),restart)'

	@$(wait)

confirmPostgresReload = $(call confirm,Modifying postgresql.conf and pg_hba.conf)

define postgresReload-Linux

@$(confirmPostgresReload)

@echo $(emph)'kernel.shmmax must be set to at least 4GB minus 1 byte:'$(endEmph)

@echo 'Append the following to /etc/sysctl.conf:'

@echo 'kernel.shmmax=4294967295'

@$(wait)

chmod a+r schemas/*.conf || $(asBien) chmod a+r schemas/*.conf

-$(asAdmin) mv -n $(linuxPostgresDir)/postgresql.conf $(linuxPostgresDir)/postgresql.conf.old

$(asAdmin) cp --preserve=timestamps schemas/postgresql.conf $(linuxPostgresDir)/postgresql.conf

-$(asAdmin) mv -n $(linuxPostgresDir)/pg_hba.conf $(linuxPostgresDir)/pg_hba.conf.old

$(asAdmin) cp --preserve=timestamps schemas/pg_hba.conf $(linuxPostgresDir)/pg_hba.conf

$(MAKE) postgres_restart-$(os)

endef

define postgresReload-Darwin

@$(confirmPostgresReload)

chmod a+r schemas/*.conf

-$(asAdmin) mv -n $(macPostgresDir)/postgresql.conf $(macPostgresDir)/postgresql.conf.old

$(asAdmin) cp schemas/postgresql.Mac.conf $(macPostgresDir)/postgresql.conf

-$(asAdmin) mv -n $(macPostgresDir)/pg_hba.conf $(macPostgresDir)/pg_hba.conf.old

$(asAdmin) cp schemas/pg_hba.Mac.conf $(macPostgresDir)/pg_hba.conf

-$(asAdmin) mv -n $(macPostgresDir)/pg_ident.conf $(macPostgresDir)/pg_ident.conf.old

$(asAdmin) cp schemas/pg_ident.Mac.conf $(macPostgresDir)/pg_ident.conf

$(MAKE) postgres_restart-$(os)

endef

postgres_reload: _always

	$($(call forOs,postgresReload))

phppgadmin-Linux: _always

	-sudo apt-get --yes install phppgadmin

	$(editPhppgadmin)

	$(editPhppgadminApacheConf)

	-sudo ln -s ../conf.d/phppgadmin /etc/apache2/conf-available/phppgadmin.conf

	sudo a2enconf phppgadmin

	$(editApacheConfForPhppgadmin)

	-sudo apache2ctl restart

postgres-Linux: _always

	-sudo apt-get --yes install postgresql-9.3

	-sudo apt-get --yes install postgresql-contrib-$(pgVersion)

	-sudo apt-get --yes install postgresql-plpython3-$(pgVersion)

	-sudo apt-get --yes install libpq-dev

	-sudo apt-get --yes install postgresql-$(pgVersion)-postgis-2.1-scripts

	-sudo apt-get --yes install postgresql-$(pgVersion)-postgis-2.1

	-$(MAKE) phppgadmin-Linux

	-sudo pip install psycopg2

	$(postgresReload-Linux)

# run pg_version inline because it needs postgresql to be installed first

# ignore errors if conf files already edited

postgres-Darwin: _always

	ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"

	brew doctor

	brew install postgis # also installs PostgreSQL

	-$(postgresReload-Darwin)

	-sudo easy_install psycopg2

	$(postgresReload-Darwin)

postgres-: _always ; # other OSes

psqlAsAdminVegbien := $(psqlAsAdmin) vegbien

# **IMPORTANT**: must use = instead of := because these files are not available

#  until config/download/live has run

bienPassword = $(shell cat config/bien_password)

bienReadPassword = $(shell cat config/bien_read_password)

##### Misc.

misc-Linux: _always

	cp -p "$(shell which dotlockfile)" bin/

misc-Darwin: _always ;

##### VegBIEN DB

#### DB and users

confirmRmDb = $(call confirm,WARNING: This will delete your entire VegBIEN\

DB!,This includes all archived imports and staging tables.)

confirmRmPublicSchema = $(call confirm,WARNING: This will delete the current\

public schema of your VegBIEN DB!,To save it: make schemas/rotate)

rmPublicSchema := $(call rmSchemaCmd,public)

db: mk_db rm_initial_public schemas/reinstall _always ;

mk_db: _always

	-echo "CREATE USER public_ PASSWORD 'password';"|$(psqlAsAdmin)

	-echo "CREATE USER bien PASSWORD '$(bienPassword)';"|$(psqlAsAdmin)

	-echo "CREATE USER bien_read PASSWORD '$(bienReadPassword)' IN ROLE bien \

NOINHERIT;"|$(psqlAsAdmin)

	-echo "CREATE DATABASE vegbien WITH OWNER bien TEMPLATE template1 \

ENCODING 'UTF8' LC_COLLATE 'en_US.UTF-8' LC_CTYPE 'en_US.UTF-8';"|$(psqlAsAdmin)

	-echo "CREATE EXTENSION hstore SCHEMA pg_catalog;"|$(psqlAsAdminVegbien)

	-echo "CREATE EXTENSION plpython3u;"|$(psqlAsAdminVegbien)

	-echo 'CREATE SCHEMA postgis;'|$(psqlAsAdminVegbien)

	-echo 'GRANT USAGE ON SCHEMA postgis TO public;'|$(psqlAsAdminVegbien)

	-echo 'CREATE EXTENSION postgis SCHEMA postgis;'\

|$(psqlAsAdminVegbien)

	# unset ON_ERROR_STOP so user-exists errors don't prevent further user-adds

	-cat config/users.sql|$(psqlAsAdmin) --set ON_ERROR_STOP

# ignore errors if user/database/etc. exists

rm_initial_public: _always

	@$(confirmRmPublicSchema)

	echo $(rmPublicSchema)|$(psqlAsAdminVegbien)

# drop public schema *as admin* because it starts out owned by postgres

rm_db: _always

	@$(confirmRmDb)

	echo "DROP DATABASE IF EXISTS vegbien;"|$(psqlAsAdmin)

	echo "DROP USER IF EXISTS bien_read;"|$(psqlAsAdmin)

	echo "DROP USER IF EXISTS bien;"|$(psqlAsAdmin)

	echo "DROP USER IF EXISTS public_;"|$(psqlAsAdmin)

reinstall_db: _always rm_db db ;

##### MySQL

mysql: _always $(call forOs,mysql) mysql_users

	@$(done)

rm_mysql: _always rm_mysql_users ;

mysql-Linux: _always

	@echo $(emph)"If asked for MySQL root password, enter $(bienPassword)"$(endEmph)

	@$(wait)

	-sudo apt-get --yes install mysql-server

	-sudo apt-get --yes install mysql-client

	-sudo apt-get --yes install mysql-workbench

	-sudo apt-get --yes install python-mysqldb

	-sudo apt-get --yes install phpmyadmin

mysql-Darwin: _always

	@echo $(emph)'Installing MySQLdb Python driver on Mac OS X 10.7 (may work on other versions):'$(endEmph)

	@echo 'Download it using "latest version" link at http://sourceforge.net/projects/mysql-python/files/'

	@echo 'Extract the archive'

	@echo '(From http://www.rustyrazorblade.com/2011/11/installing-mysqldb-on-macos-lion/:)'

	@echo 'Run ln -s /usr/local/mysql/lib/libmysqlclient.18.dylib /usr/lib/libmysqlclient.18.dylib'

	@echo 'Run ln -s /usr/local/mysql/lib /usr/local/mysql/lib/mysql'

	@echo '(From http://blog.infoentropy.com/MySQL-python_EnvironmentError_mysql_config_not_found:)'

	@echo 'Edit site.cfg and change the line like "mysql_config = " to "mysql_config = /usr/local/mysql/bin/mysql_config"'

	@echo '(From http://www.mangoorange.com/2008/08/01/installing-python-mysqldb-122-on-mac-os-x/:)'

	@echo 'Change to the directory of the extracted files'

	@echo 'Run python setup.py clean'

	@echo 'Run python setup.py build'

	@echo 'Run sudo python setup.py install'

	@echo "Run python -c 'import MySQLdb'"

	@$(wait)

mysql-: _always # other OSes

mysqlAsRoot := mysql --user=root --password='$(bienPassword)'

mysql_users: _always

	-echo "CREATE USER 'bien'@'localhost' IDENTIFIED BY '$(bienPassword)';"\

|$(mysqlAsRoot)

	-echo "CREATE USER 'bien_read'@'%' IDENTIFIED BY '$(bienReadPassword)';"\

|$(mysqlAsRoot)

# ignore errors if user exists

rm_mysql_users: _always

	-echo "DROP USER 'bien_read'@'localhost';"|$(mysqlAsRoot)

	-echo "DROP USER 'bien'@'%';"|$(mysqlAsRoot)

# ignore errors if user exists

##### Datasources

inputs: _always inputs/all ;

import: _always import-msg inputs/import_scrub ;

import-msg: _always

	@echo $(emph)"To import all inputs at once:"$(endEmph) . bin/import_all

	@echo

scrub: _always inputs/.TNRS/tnrs/tnrs-remake ;

verify: _always inputs/verify

	@$(done)

test: _always inputs/test

	@$(done)

##### Testing

test-all: _always remake test missing_mappings

	@$(done)

##### Subdir forwarding

# Must come last so overridden targets are not forwarded

define subdirTargets

$(subdir): _always

	+$$(subMake)

$(subdir)%: _always

	+$$(subMake)

.PRECIOUS: $(subdir)% # let subdir's Makefile decide whether to delete on error

$(subdir)reinstall: _always $(subdir)uninstall $(subdir)install ;

endef

$(foreach subdir,$(wildcard */),$(eval $(subdirTargets)))

Makefile: ;

%: $(addsuffix %,$(dir $(shell echo */Makefile))) _always ;

#### Overrides of forwarded commands

# commented out to avoid a cascade of "overriding commands for target" warnings

#inputs/reinstall: _always

#	echo '. bin/reinstall_all; wait'|bash -s

#### Maps validation

termsSubdirs := $(call no/,$(call wildcard/,inputs/*/))

include lib/mappings.Makefile