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1
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inputs/VegBank/run
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2
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+ inputs/VegBank/run
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3
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| + main @lib/runscripts/util.run:56 -> 152
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4
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| | + all @lib/runscripts/util.run:152 -> lib/runscripts/install.run:23
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5
|
| | | + install @lib/runscripts/install.run:26 -> lib/runscripts/import.run:29
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6
|
| | | | + import @lib/runscripts/import.run:32 -> lib/runscripts/datasrc_dir.run:29
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7
|
| | | | | + pg_schema_exists @lib/runscripts/datasrc_dir.run:33 -> lib/sh/db.sh:412
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8
|
| | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
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9
|
| | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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10
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| | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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11
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| | | | | + inputs/VegBank/Source/run import
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12
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| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
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13
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| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
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14
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| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/Source/.. schema
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15
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| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
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16
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| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
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17
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| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank Source/map.csv
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18
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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19
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| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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20
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| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
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21
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| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
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22
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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23
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| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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24
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
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25
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
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26
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
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27
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
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28
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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29
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| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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30
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
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31
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| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank Source/test
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32
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| | | | | + inputs/VegBank/project/run import
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33
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
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34
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
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35
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/project/.. schema
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36
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
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37
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
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38
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank project/map.csv
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|
39
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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|
40
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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41
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
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42
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
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43
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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44
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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45
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
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46
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
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47
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
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48
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
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|
49
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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|
50
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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|
51
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
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52
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank project/test
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53
|
| | | | | + inputs/VegBank/plot/run import
|
|
54
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
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|
55
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
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|
56
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/plot/.. schema
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|
57
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
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|
58
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
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|
59
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot/map.csv
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|
60
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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|
61
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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|
62
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
63
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot/postprocess.sql
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|
64
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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|
65
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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|
66
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
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|
67
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
68
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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|
69
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
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|
70
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
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|
71
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
72
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
73
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
74
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
75
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
76
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot/test
|
|
77
|
| | | | | + inputs/VegBank/plot_/run import
|
|
78
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
79
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
80
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/plot_/.. schema
|
|
81
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
82
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
83
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot_/map.csv
|
|
84
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
85
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
86
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
87
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
88
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
89
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
90
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
91
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
92
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
93
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
94
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
95
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
96
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
97
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plot_/test
|
|
98
|
| | | | | + inputs/VegBank/observation_/run import
|
|
99
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
100
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
101
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/observation_/.. schema
|
|
102
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
103
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
104
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation_/map.csv
|
|
105
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
106
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
107
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
108
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation_/postprocess.sql
|
|
109
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
110
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
111
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
112
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
113
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
114
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
115
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
116
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
117
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
118
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
119
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
120
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
121
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation_/test
|
|
122
|
| | | | | + inputs/VegBank/stratumtype/run import
|
|
123
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
124
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
125
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stratumtype/.. schema
|
|
126
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
127
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
128
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratumtype/map.csv
|
|
129
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
130
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
131
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
132
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
133
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
134
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
135
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
136
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
137
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
138
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
139
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
140
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
141
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
142
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratumtype/test
|
|
143
|
| | | | | + inputs/VegBank/stratum/run import
|
|
144
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
145
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
146
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stratum/.. schema
|
|
147
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
148
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
149
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratum/map.csv
|
|
150
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
151
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
152
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
153
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratum/postprocess.sql
|
|
154
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
155
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
156
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
157
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
158
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
159
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
160
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
161
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
162
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
163
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
164
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
165
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
166
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stratum/test
|
|
167
|
| | | | | + inputs/VegBank/plantconcept_/run import
|
|
168
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
169
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
170
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/plantconcept_/.. schema
|
|
171
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
172
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
173
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plantconcept_/map.csv
|
|
174
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
175
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
176
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
177
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plantconcept_/postprocess.sql
|
|
178
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
179
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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180
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| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
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181
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182
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| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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183
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| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
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184
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| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
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185
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| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
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186
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| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
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187
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| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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188
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| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
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189
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
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190
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| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank plantconcept_/test
|
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191
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| | | | | + inputs/VegBank/taxonobservation_/run import
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192
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| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
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193
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| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
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194
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| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/taxonobservation_/.. schema
|
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195
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| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
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196
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| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
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197
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| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxonobservation_/map.csv
|
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198
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
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199
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| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
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200
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| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
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201
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202
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
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203
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204
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| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
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205
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206
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207
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| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
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208
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| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
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209
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| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
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210
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| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
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211
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| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
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212
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| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
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213
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
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214
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| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxonobservation_/test
|
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215
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| | | | | + inputs/VegBank/stemcount_/run import
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216
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| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
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217
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| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
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218
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stemcount_/.. schema
|
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219
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| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
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220
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| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
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221
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| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemcount_/map.csv
|
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222
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
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223
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|
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224
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
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225
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| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemcount_/postprocess.sql
|
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226
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
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227
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|
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228
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| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
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229
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| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
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230
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| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
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231
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
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232
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
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233
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| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
234
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
235
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
236
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| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
237
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
238
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemcount_/test
|
|
239
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| | | | | + inputs/VegBank/stemlocation_/run import
|
|
240
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
241
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
242
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/stemlocation_/.. schema
|
|
243
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
244
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
245
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemlocation_/map.csv
|
|
246
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
247
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
248
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
249
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemlocation_/postprocess.sql
|
|
250
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
251
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
252
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
253
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
254
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
255
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
256
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
257
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
258
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
259
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
260
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
261
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
262
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank stemlocation_/test
|
|
263
|
| | | | | + inputs/VegBank/taxon_observation.**/run import
|
|
264
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
265
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
266
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
267
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
268
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxon_observation.**/postprocess.sql
|
|
269
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
270
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
271
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
272
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
273
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
274
|
| | | | | | | | + builtin cd -P inputs/VegBank/taxon_observation.**
|
|
275
|
| | | | | | | | | + rm -f header.csv
|
|
276
|
| | | | | | | | + mappings__table_run @lib/runscripts/view.run:22 -> lib/sh/util.sh:419
|
|
277
|
| | | | | | | | | + public_schema_exists @lib/sh/util.sh:435 -> lib/sh/db.sh:421
|
|
278
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
279
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
280
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
281
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
282
|
| | | | | | | | | + builtin cd -P inputs/VegBank/taxon_observation.**
|
|
283
|
| | | | | | | | | | + rm -f map.csv
|
|
284
|
| | | | | | | | | + test_ @lib/sh/util.sh:439 -> lib/runscripts/table.run:97
|
|
285
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank taxon_observation.**/test
|
|
286
|
| | | | | + inputs/VegBank/^taxon_observation.**.sample/run import
|
|
287
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
288
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
289
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/^taxon_observation.**.sample/.. schema
|
|
290
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
291
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
292
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank ^taxon_observation.**.sample/map.csv
|
|
293
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
294
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
295
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
296
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
297
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
298
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
299
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
300
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
301
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
302
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
303
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
304
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
305
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
306
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank ^taxon_observation.**.sample/test
|
|
307
|
| | | | | + inputs/VegBank/projectcontributor_/run import
|
|
308
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
309
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
310
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/projectcontributor_/.. schema
|
|
311
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
312
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
313
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank projectcontributor_/map.csv
|
|
314
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
315
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
316
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
317
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank projectcontributor_/postprocess.sql
|
|
318
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
319
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
320
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
321
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
322
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
323
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
324
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
325
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
326
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
327
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
328
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
329
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
330
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank projectcontributor_/test
|
|
331
|
| | | | | + inputs/VegBank/observationcontributor_/run import
|
|
332
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
333
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
334
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/observationcontributor_/.. schema
|
|
335
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
336
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
337
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observationcontributor_/map.csv
|
|
338
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
339
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
340
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
341
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observationcontributor_/postprocess.sql
|
|
342
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
343
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
344
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
345
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
346
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
347
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
348
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
349
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
350
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
351
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
352
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
353
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
354
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observationcontributor_/test
|
|
355
|
| | | | | + inputs/VegBank/observation__community/run import
|
|
356
|
| | | | | | + import @lib/runscripts/util.run:56 -> lib/runscripts/table.run:131
|
|
357
|
| | | | | | | + load_data @lib/runscripts/table.run:134 -> 50
|
|
358
|
| | | | | | | | + /usr/bin/make --directory=inputs/VegBank/observation__community/.. schema
|
|
359
|
| | | | | | | + postprocess @lib/runscripts/table.run:135 -> 120
|
|
360
|
| | | | | | | | + map_table @lib/runscripts/table.run:125 -> 77
|
|
361
|
| | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation__community/map.csv
|
|
362
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
363
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
364
|
| | | | | | | | + custom_postprocess @lib/runscripts/table.run:126 -> 107
|
|
365
|
| | | | | | | | + mk_derived @lib/runscripts/table.run:127 -> 117
|
|
366
|
| | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
367
|
| | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
368
|
| | | | | | | | + mappings @lib/runscripts/table.run:128 -> 99
|
|
369
|
| | | | | | | | | + public_schema_exists @lib/runscripts/table.run:102 -> lib/sh/db.sh:421
|
|
370
|
| | | | | | | | | | + pg_schema_exists @lib/sh/db.sh:421 -> 412
|
|
371
|
| | | | | | | | | | | + benign_does_not_exist_error psql @lib/sh/util.sh:560 -> lib/sh/db.sh:405
|
|
372
|
| | | | | | | | | | | | + declare -x PGHOST="localhost" PGUSER="bien" PGDATABASE="vegbien"
|
|
373
|
| | | | | | | | | | | | + psql --file /dev/fd/40 --set ON_ERROR_STOP=1 --quiet --echo-all --echo-hidden 40<&0 0<&20 41>&1
|
|
374
|
| | | | | | | | | + test_ @lib/runscripts/table.run:104 -> 97
|
|
375
|
| | | | | | | | | | + /usr/bin/make --directory=inputs/VegBank observation__community/test
|
|
376
|
| | | | + export_ @lib/runscripts/import.run:33 -> 24
|
