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Name Size Revision Age Author Comment
  logs 8801 over 11 years Aaron Marcuse-Kubitza inputs/input.Makefile: SVN: add, %/add: */logs:...
.map.csv.last_cleanup 0 Bytes 7657 over 11 years Aaron Marcuse-Kubitza Added inputs/TEX/
TEX-LL_Texas_latlong_Final2.tab.md5 33 Bytes 7657 over 11 years Aaron Marcuse-Kubitza Added inputs/TEX/
VegBIEN.csv 42 Bytes 10625 over 11 years Aaron Marcuse-Kubitza inputs/TEX/: switched to new-style import, usin...
header.csv 624 Bytes 10091 over 11 years Aaron Marcuse-Kubitza added inputs/*/*/header.csv for CSV inputs, whi...
map.csv 1.61 KB 12879 over 10 years Aaron Marcuse-Kubitza mappings/VegCore.htm: regenerated from wiki: re...
new_terms.csv 981 Bytes 11924 almost 11 years Aaron Marcuse-Kubitza fix: inputs/TEX/Specimen*/map.csv, postprocess....
postprocess.sql 1.76 KB 11924 almost 11 years Aaron Marcuse-Kubitza fix: inputs/TEX/Specimen*/map.csv, postprocess....
run 63 Bytes 10625 over 11 years Aaron Marcuse-Kubitza inputs/TEX/: switched to new-style import, usin...
test.xml.ref 15.6 KB 14454 over 10 years Aaron Marcuse-Kubitza bugfix: mappings/VegCore-VegBIEN.csv: prefixed ...
unmapped_terms.csv 584 Bytes 11924 almost 11 years Aaron Marcuse-Kubitza fix: inputs/TEX/Specimen*/map.csv, postprocess....
  • svn:ignore: *

Latest revisions

# Date Author Comment
14454 08/11/2014 03:40 AM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: prefixed taxonomic ranks: use _concat_nullify() so that the prefix is only added if the epithet is non-NULL

14076 07/15/2014 10:07 PM Aaron Marcuse-Kubitza

inputs/TEX/Specimen2/test.xml.ref: updated

12886 03/24/2014 05:35 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: specimenreplicate.institution_id: renamed to duplicate_institutions_sourcelist_id, as decided in the conference calls (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2)

12879 03/24/2014 01:49 AM Aaron Marcuse-Kubitza

mappings/VegCore.htm: regenerated from wiki: rename specimenHolderInstitutions to specimen_duplicate_institutions, as decided in the 2014-03-13 conference call (wiki.vegpath.org/2014-03-13_conference_call#schema-changes-2). note that most schema changes (such as this one) involve mappings changes, which are handled automatically by `inputs/run postprocess; yes|make inputs/{NVS,SALVIAS,TEAM}/test`.

11970 01/20/2014 11:33 AM Aaron Marcuse-Kubitza

moved everything into /trunk/ to create the standard svn layout, for use with tools that require this (eg. git-svn). IMPORTANT: do NOT do an `svn up`. instead, re-use your working copy's existing files with `svn switch` (http://svnbook.red-bean.com/en/1.6/svn.ref.svn.c.switch.html).

11924 12/20/2013 12:28 AM Aaron Marcuse-Kubitza

fix: inputs/TEX/Specimen*/map.csv, postprocess.sql: habitat: also placed in occurrenceRemarks so that this field gets parsed for growth form information, as requested by Brad (wiki.vegpath.org/TEX_validation#2013-2-26)

11923 12/19/2013 11:49 PM Aaron Marcuse-Kubitza

fix: inputs/TEX/Specimen*/map.csv: mapped constant values for specimenHolderInstitutions, country. these have to be added with `rm=1 ./inputs/TEX/Specimen.../run postprocess`.

11922 12/19/2013 11:42 PM Aaron Marcuse-Kubitza

bugfix: inputs/TEX/Specimen2/map.csv: mapped BARCODE to accessionNumber so that we have a unique ID for each row

11396 10/21/2013 07:14 PM Aaron Marcuse-Kubitza

fix: bin/map: put template: comment out the "Put template:" label so that the output is valid XML, and displays properly in a browser rather than showing a syntax error

11107 09/29/2013 08:58 PM Aaron Marcuse-Kubitza

bugfix: mappings/VegCore-VegBIEN.csv: nest all taxonoccurrences inside a stratum event, so that the parent locationevent is always fully populated before child locationevents point to it. (previously, a stub parent event was created when the child event was imported first, which blocked the fully-populated parent event from being inserted later on.) this uses auto-folding (for VegBank/CVS) and auto-forwarding (for other datasources) to prune empty stratum events for taxonoccurrences that don't have strata. (see wiki.vegpath.org/Auto-folding, wiki.vegpath.org/Auto-forwarding for more info about these normalization techniques.) note that the inserted row counts stay exactly the same for all datasources except VegBank (which was being fixed), indicating that this signficant change to the mappings did not change the semantics of the import of taxonoccurrences.

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