Revision 14914
Added by Aaron Marcuse-Kubitza about 10 years ago
| trunk/config/VirtualBox_VMs/vegbiendev/README.TXT | ||
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# open VirtualBox |
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# select the vegbiendev VM |
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# restore the "+LiveCD+ssh+root pw+mount" snapshot |
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# **IMPORTANT**: can't use inplace=1 optimization because this messes up the |
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# shared hardlinks used by ~/Documents/BIEN/vegbiendev/ |
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# --link-dest: relative to dest, not currdir, so need abs path |
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l=1 overwrite=1 inplace=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/ --exclude=/home/bien/svn/ --exclude=/home/aaronmk/Dropbox/
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l=1 overwrite=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/ --exclude=/home/bien/svn/ --exclude=/home/aaronmk/Dropbox/ |
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# --exclude=/home/aaronmk/Dropbox/: this is not used by the BIEN scripts |
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sudo mkdir ~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ |
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# --exclude of specific files: these have compressed versions |
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l=1 overwrite=1 inplace=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/home/aaronmk/bien/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --exclude='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --exclude='*.CSV' --exclude='*.gz' --exclude='*.log.sql' --exclude='*.zip' home/bien/svn/
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l=1 overwrite=1 inplace=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/home/aaronmk/bien/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --include='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --include='*.CSV' --include='*.gz' --include='*.log.sql' --include='*.zip' --include='*/' --exclude='**' --no-perms home/bien/svn/
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l=1 overwrite=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/home/aaronmk/bien/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --exclude='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --exclude='*.CSV' --exclude='*.gz' --exclude='*.log.sql' --exclude='*.zip' home/bien/svn/ |
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l=1 overwrite=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/home/aaronmk/bien/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --include='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --include='*.CSV' --include='*.gz' --include='*.log.sql' --include='*.zip' --include='*/' --exclude='**' --no-perms home/bien/svn/ |
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# --no-perms: enable --link-dest to work in spite of perms changes (the |
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# perms on these files are not important to the BIEN scripts) |
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# generate list of all the files whose permissions were changed since the |
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# backup, but which are extracted with their changed permissions instead of |
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# their original ones in the backup: |
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l= overwrite=1 inplace=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/home/aaronmk/bien/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql home/bien/svn/ >~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.perms_changed.txt
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l= overwrite=1 src=root@128.111.220.198:/mnt/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev/home/aaronmk/bien/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql home/bien/svn/ >~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.perms_changed.txt |
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to retrieve the contents of the VM, with the VirtualBox changes added: |
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# open VirtualBox |
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# select the vegbiendev VM |
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# restore the "(+VirtualBox changes)+root pw" snapshot |
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# boot the VM |
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# **IMPORTANT**: can't use inplace=1 optimization because this messes up the |
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# shared hardlinks used by ~/Documents/BIEN/vegbiendev/ |
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# --link-dest: relative to dest, not currdir, so need abs path |
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l=1 overwrite=1 inplace=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ --exclude=/home/bien/svn/ --exclude=/home/aaronmk/Dropbox/
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l=1 overwrite=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/ --exclude=/home/bien/svn/ --exclude=/home/aaronmk/Dropbox/ |
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# --exclude=/home/aaronmk/Dropbox/: this is not used by the BIEN scripts |
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sudo mkdir ~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/home/bien/svn/ |
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# --exclude of specific files: these have compressed versions |
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l=1 overwrite=1 inplace=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --exclude='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --exclude='*.CSV' --exclude='*.gz' --exclude='*.log.sql' --exclude='*.zip' home/bien/svn/
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l=1 overwrite=1 inplace=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --include='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --include='*.CSV' --include='*.gz' --include='*.log.sql' --include='*.zip' --include='*/' --exclude='**' --no-perms home/bien/svn/
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l=1 overwrite=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --exclude='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --exclude='*.CSV' --exclude='*.gz' --exclude='*.log.sql' --exclude='*.zip' home/bien/svn/ |
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l=1 overwrite=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql --include='/inputs/FIA/_archive/2011-10-17/Organism/*_Extract.csv' --include='*.CSV' --include='*.gz' --include='*.log.sql' --include='*.zip' --include='*/' --exclude='**' --no-perms home/bien/svn/ |
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# --no-perms: enable --link-dest to work in spite of perms changes (the |
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# perms on these files are not important to the BIEN scripts) |
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l= overwrite=1 inplace=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql home/bien/svn/|diff /dev/stdin ~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.perms_changed.txt
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l= overwrite=1 src=root@128.111.220.240:/ dest=~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.VirtualBox/ sudo -E put --link-dest="$HOME"/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT/home/bien/svn/ --no-owner --no-group --exclude=/backups/.vegbien.r10848.backup.aYCFxI --exclude='/backups/vegbien.*.backup' --exclude=/inputs/GBIF/_archive/Specimen/GBIF.txt --exclude=/inputs/GBIF/_MySQL/GBIFPortalDB-2013-02-20.data.sql --exclude=/inputs/GBIF/raw_occurrence_record_plants/_archive/table.2013-5-13.tsv --exclude=/inputs/GBIF/raw_occurrence_record_plants/table.tsv --exclude=/inputs/VegBank/_archive/2012-8-30/vegbank.sql home/bien/svn/|diff /dev/stdin ~/Documents/BIEN/vegbiendev.2014-2-2_1-07-32PT.perms_changed.txt |
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# ensure there are no file changes |
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to configure the VM to support VirtualBox: |
Also available in: Unified diff
bugfix: config/VirtualBox_VMs/vegbiendev/README.TXT: to retrieve the contents of the VM: can't use inplace=1 optimization because this messes up the shared hardlinks used by ~/Documents/BIEN/vegbiendev/