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Revision 1497

Added by Aaron Marcuse-Kubitza almost 13 years ago

inputs/*/maps/DwC.specimens.csv: Ran through `cols *` to standardize CSV format to that generated by Python

View differences:

inputs/ARIZ/maps/DwC.specimens.csv
1 
"ARIZ[DwC]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments"
2 
"GlobalUniqueIdentifier","occurrenceID",
3 
"CatalogNumber",,"Map to nothing so it doesn't overwrite CatalogNumberNumeric"
4 
"CatalogNumberNumeric","CatalogNumber",
5 
"TimeCollected","TimeOfDay",
6 
"VerbatimCollectingDate","eventDate/_alt/0",
7 
"HorizontalDatum",,"Not used"
8 
"OriginalCoordinateSystem","verbatimSRS",
9 
"GeorefMethod","georeferenceProtocol",
10 
"LatLongComments","georeferenceRemarks",
11 
"ScientificName","ScientificName/_alt/2",
12 
"ScientificNameAuthor","ScientificName/_alt/1","Contains the binomial in addition to the authority"
13 
"IdentificationModifier","identificationQualifier",
14 
"Tissues",,"Not used"
15 
"AgeClass","lifeStage",
16 
"GenBankNum","associatedSequences/_label[label=""GenBank""]/value",
17 
"OtherCatalogNumbers","RelatedCatalogItem",
18 
"RelatedCatalogedItems","RelatedCatalogItem","Used only when OtherCatalogNumbers is NULL, so _alt not needed"
19 
"Remarks","taxonRemarks",
1 
ARIZ[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments
2 
GlobalUniqueIdentifier,occurrenceID,
3 
CatalogNumber,,Map to nothing so it doesn't overwrite CatalogNumberNumeric
4 
CatalogNumberNumeric,CatalogNumber,
5 
TimeCollected,TimeOfDay,
6 
VerbatimCollectingDate,eventDate/_alt/0,
7 
HorizontalDatum,,Not used
8 
OriginalCoordinateSystem,verbatimSRS,
9 
GeorefMethod,georeferenceProtocol,
10 
LatLongComments,georeferenceRemarks,
11 
ScientificName,ScientificName/_alt/2,
12 
ScientificNameAuthor,ScientificName/_alt/1,Contains the binomial in addition to the authority
13 
IdentificationModifier,identificationQualifier,
14 
Tissues,,Not used
15 
AgeClass,lifeStage,
16 
GenBankNum,"associatedSequences/_label[label=""GenBank""]/value",
17 
OtherCatalogNumbers,RelatedCatalogItem,
18 
RelatedCatalogedItems,RelatedCatalogItem,"Used only when OtherCatalogNumbers is NULL, so _alt not needed"
19 
Remarks,taxonRemarks,
inputs/NY/maps/DwC.specimens.csv
1 
"NY[DwC]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments"
2 
"key",,
3 
"Locality","Locality/_merge/1",
4 
"MinimumElevation","MinimumElevation/_nullIf:[null=.]/value",
5 
"Notes","Notes/_merge/1",
6 
"PlantFungusDescription","Notes/_merge/2/_label[label=""plant fungus""]/value",
7 
"Substrate","Locality/_merge/2/_label[label=""substrate""]/value",
8 
"Vegetation","Locality/_merge/3/_label[label=""vegetation""]/value",
9 
"UniqueNYInternalRecordNumber","occurrenceID",
1 
NY[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments
2 
key,,
3 
Locality,Locality/_merge/1,
4 
MinimumElevation,MinimumElevation/_nullIf:[null=.]/value,
5 
Notes,Notes/_merge/1,
6 
PlantFungusDescription,"Notes/_merge/2/_label[label=""plant fungus""]/value",
7 
Substrate,"Locality/_merge/2/_label[label=""substrate""]/value",
8 
Vegetation,"Locality/_merge/3/_label[label=""vegetation""]/value",
9 
UniqueNYInternalRecordNumber,occurrenceID,
inputs/GBIF/maps/DwC.specimens.csv
1 
"GBIF[DwC]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments"
2 
"LatestDateCollected","eventDate",
3 
"InstitutionCD","InstitutionCode",
4 
"CollectionCD","CollectionCode",
5 
"CatalogNO","CatalogNumber",
6 
"LastDateModified","DateLastModified",
7 
"ScientificNameOriginal","originalNameUsage/_alt/1","DwC doesn't fully support taxonomic redeterminations"
8 
"AuthorOfScientificName","ScientificNameAuthor",
9 
"GBIFFamilyOriginal","originalNameUsage/_alt/2/_name/first","DwC doesn't fully support taxonomic redeterminations"
10 
"GBIFGenusOriginal","originalNameUsage/_alt/2/_name/middle","DwC doesn't fully support taxonomic redeterminations"
11 
"MinimumElevationInMeter","MinimumElevationInMeters",
12 
"MaximumElevationInMeter","MaximumElevationInMeters",
1 
GBIF[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments
2 
LatestDateCollected,eventDate,
3 
InstitutionCD,InstitutionCode,
4 
CollectionCD,CollectionCode,
5 
CatalogNO,CatalogNumber,
6 
LastDateModified,DateLastModified,
7 
ScientificNameOriginal,originalNameUsage/_alt/1,DwC doesn't fully support taxonomic redeterminations
8 
AuthorOfScientificName,ScientificNameAuthor,
9 
GBIFFamilyOriginal,originalNameUsage/_alt/2/_name/first,DwC doesn't fully support taxonomic redeterminations
10 
GBIFGenusOriginal,originalNameUsage/_alt/2/_name/middle,DwC doesn't fully support taxonomic redeterminations
11 
MinimumElevationInMeter,MinimumElevationInMeters,
12 
MaximumElevationInMeter,MaximumElevationInMeters,
inputs/SpeciesLink/maps/DwC.specimens.csv
1 
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments"
2 
"AuthorYearOfScientificName",,
3 
"DayOfYear",,
1 
"SpeciesLink[DwC,dwcore,darwin1,curatorial,geospatial]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments
2 
AuthorYearOfScientificName,,
3 
DayOfYear,,
inputs/MO/maps/DwC.specimens.csv
1 
"MO[DwC]","DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/","Comments"
2 
"convertednotes",,
1 
MO[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments
2 
convertednotes,,

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