Revision 1510
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/U/maps/src.join.specimens.csv | ||
|---|---|---|
| 17 | 17 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
| 18 | 18 |
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
| 19 | 19 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
| 20 |
Locnotes,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 20 | 21 |
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
| 21 | 22 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
| 23 |
Ecology,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
|
| 22 | 24 |
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 23 | 25 |
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 24 | 26 |
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}",,71
|
| ... | ... | |
| 30 | 32 |
maximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
|
| 31 | 33 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
|
| 32 | 34 |
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 35 |
Lat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
|
| 33 | 36 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 34 | 37 |
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 35 | 38 |
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 36 | 39 |
latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 37 | 40 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 38 | 41 |
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 42 |
Long,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
|
| 39 | 43 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 40 | 44 |
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 41 | 45 |
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| ... | ... | |
| 51 | 55 |
minimumDepthInMeters,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74 |
| 52 | 56 |
EventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 53 | 57 |
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 58 |
Colldd,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
|
| 54 | 59 |
DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 55 | 60 |
dayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 61 |
Collmm,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
|
| 56 | 62 |
MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 57 | 63 |
monthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 64 |
Collyy,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
|
| 58 | 65 |
YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 59 | 66 |
yearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 60 | 67 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
| ... | ... | |
| 67 | 74 |
dayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
| 68 | 75 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
| 69 | 76 |
monthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
| 77 |
Detyy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
|
| 70 | 78 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
| 71 | 79 |
yearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
| 72 | 80 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
| 73 | 81 |
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
| 74 | 82 |
IdentifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
| 75 | 83 |
identifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
| 84 |
Detby,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 76 | 85 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 77 | 86 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 78 | 87 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| ... | ... | |
| 101 | 110 |
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143 |
| 102 | 111 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
| 103 | 112 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
| 104 |
Collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
|
| 105 | 113 |
RecordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 106 | 114 |
collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 107 | 115 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 116 |
Collector,/*_id/taxonoccurrence/verbatimcollectorname/_merge/1,,23 |
|
| 117 |
Addcoll,/*_id/taxonoccurrence/verbatimcollectorname/_merge/2,,23 |
|
| 108 | 118 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 109 | 119 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 110 | 120 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| ... | ... | |
| 117 | 127 |
TaxonRemarks,/description/_merge/2,,158 |
| 118 | 128 |
remarks,/description/_merge/2,,158 |
| 119 | 129 |
taxonRemarks,/description/_merge/2,,158 |
| 130 |
Barcode,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 120 | 131 |
CatalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 121 | 132 |
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 122 | 133 |
GlobalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 134 |
ID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 123 | 135 |
OccurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 124 | 136 |
globalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 125 | 137 |
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 126 | 138 |
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 139 |
Number,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 127 | 140 |
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 128 | 141 |
collectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 129 | 142 |
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| ... | ... | |
| 133 | 146 |
fieldNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/3,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53 |
| 134 | 147 |
InstitutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8 |
| 135 | 148 |
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8 |
| 136 |
Addcoll,, |
|
| 137 |
Alt,, |
|
| 138 |
Alt2,, |
|
| 139 |
Barcode,, |
|
| 140 |
Colldd,, |
|
| 141 |
Collmm,, |
|
| 142 |
Collyy,, |
|
| 149 |
Alt,,What is this? |
|
| 150 |
Alt2,,What is this? |
|
| 143 | 151 |
Coorsyst,, |
| 144 |
DateInfo,, |
|
| 145 |
Detby,, |
|
| 146 |
Detyy,, |
|
| 152 |
DateInfo,,Not used |
|
| 147 | 153 |
EW,, |
| 148 |
Ecology,, |
|
| 149 | 154 |
Gazetteer,, |
| 150 |
ID,, |
|
| 151 |
Lat,, |
|
| 152 |
Locnotes,, |
|
| 153 |
Long,, |
|
| 154 | 155 |
Majorarea,, |
| 155 | 156 |
NS,, |
| 156 | 157 |
Newgazett,, |
| 157 |
Number,, |
|
| 158 |
Phenology,, |
|
| 159 |
Prefix,, |
|
| 160 |
Suffix,, |
|
| 161 |
cf,, |
|
| 158 |
Phenology,,** No join mapping for ReproductiveCondition ** |
|
| 159 |
Prefix,,Not used |
|
| 160 |
Suffix,,Not used |
|
| 161 |
cf,,** No join mapping for IdentificationQualifier ** |
|
| inputs/U/maps/DwC.specimens.csv | ||
|---|---|---|
| 1 | 1 |
U[DwC],"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list:[institutionID=$/_ignore/inLabel]/",Comments |
| 2 |
ID,, |
|
| 3 |
Barcode,, |
|
| 4 |
Prefix,, |
|
| 5 |
Number,, |
|
| 6 |
Suffix,, |
|
| 7 |
Addcoll,, |
|
| 8 |
Colldd,, |
|
| 9 |
Collmm,, |
|
| 10 |
Collyy,, |
|
| 11 |
DateInfo,, |
|
| 12 |
cf,, |
|
| 13 |
Detby,, |
|
| 14 |
Detyy,, |
|
| 2 |
ID,GlobalUniqueIdentifier, |
|
| 3 |
Barcode,CatalogNumber, |
|
| 4 |
Collector,Collector/_merge/1, |
|
| 5 |
Prefix,,Not used |
|
| 6 |
Number,RecordNumber, |
|
| 7 |
Suffix,,Not used |
|
| 8 |
Addcoll,Collector/_merge/2, |
|
| 9 |
Colldd,DayCollected, |
|
| 10 |
Collmm,MonthCollected, |
|
| 11 |
Collyy,YearCollected, |
|
| 12 |
DateInfo,,Not used |
|
| 13 |
cf,IdentificationQualifier, |
|
| 14 |
Detby,IdentifiedBy, |
|
| 15 |
Detyy,YearIdentified, |
|
| 15 | 16 |
Gazetteer,, |
| 16 | 17 |
Newgazett,, |
| 17 | 18 |
Majorarea,, |
| 18 |
Locnotes,, |
|
| 19 |
Locnotes,VerbatimLocality,
|
|
| 19 | 20 |
Coorsyst,, |
| 20 |
Lat,, |
|
| 21 |
Lat,DecimalLatitude,
|
|
| 21 | 22 |
NS,, |
| 22 |
Long,, |
|
| 23 |
Long,DecimalLongitude,
|
|
| 23 | 24 |
EW,, |
| 24 |
Alt,, |
|
| 25 |
Alt2,, |
|
| 26 |
Ecology,, |
|
| 27 |
Phenology,, |
|
| 25 |
Alt,,What is this? |
|
| 26 |
Alt2,,What is this? |
|
| 27 |
Ecology,Habitat, |
|
| 28 |
Phenology,ReproductiveCondition, |
|
| inputs/U/maps/DwC.specimens.full.csv | ||
|---|---|---|
| 10 | 10 |
Bed,Bed |
| 11 | 11 |
Behavior,Behavior |
| 12 | 12 |
BoundingBox,BoundingBox |
| 13 |
Barcode,CatalogNumber, |
|
| 13 | 14 |
CatalogNumber,CatalogNumber |
| 14 | 15 |
Class,Class |
| 15 | 16 |
CollectedDate,CollectedDate |
| 16 | 17 |
CollectionCode,CollectionCode |
| 17 | 18 |
CollectionID,CollectionID |
| 18 |
Collector,Collector |
|
| 19 |
Collector,Collector/_merge/1, |
|
| 20 |
Addcoll,Collector/_merge/2, |
|
| 19 | 21 |
CollectorNumber,CollectorNumber |
| 20 | 22 |
Continent,Continent |
| 21 | 23 |
ContinentOcean,ContinentOcean |
| ... | ... | |
| 31 | 33 |
DateIdentified/_alt,DateIdentified/_alt |
| 32 | 34 |
DateLastModified,DateLastModified |
| 33 | 35 |
Day,Day |
| 36 |
Colldd,DayCollected, |
|
| 34 | 37 |
DayCollected,DayCollected |
| 35 | 38 |
DayIdentified,DayIdentified |
| 36 | 39 |
Dcterms:accessRights,Dcterms:accessRights |
| ... | ... | |
| 42 | 45 |
Dcterms:rightsHolder,Dcterms:rightsHolder |
| 43 | 46 |
Dcterms:type,Dcterms:type |
| 44 | 47 |
DecimalLatitude,DecimalLatitude |
| 48 |
Lat,DecimalLatitude, |
|
| 45 | 49 |
DecimalLongitude,DecimalLongitude |
| 50 |
Long,DecimalLongitude, |
|
| 46 | 51 |
Disposition,Disposition |
| 47 | 52 |
DynamicProperties,DynamicProperties |
| 48 | 53 |
EarliestAgeOrLowestStage,EarliestAgeOrLowestStage |
| ... | ... | |
| 74 | 79 |
GeoreferencedBy,GeoreferencedBy |
| 75 | 80 |
GeoreferencedDate,GeoreferencedDate |
| 76 | 81 |
GlobalUniqueIdentifier,GlobalUniqueIdentifier |
| 82 |
ID,GlobalUniqueIdentifier, |
|
| 77 | 83 |
Group,Group |
| 84 |
Ecology,Habitat, |
|
| 78 | 85 |
Habitat,Habitat |
| 79 | 86 |
HigherClassification,HigherClassification |
| 80 | 87 |
HigherGeography,HigherGeography |
| ... | ... | |
| 82 | 89 |
HighestBiostratigraphicZone,HighestBiostratigraphicZone |
| 83 | 90 |
IdentificationID,IdentificationID |
| 84 | 91 |
IdentificationQualifier,IdentificationQualifier |
| 92 |
cf,IdentificationQualifier, |
|
| 85 | 93 |
IdentificationReferences,IdentificationReferences |
| 86 | 94 |
IdentificationRemarks,IdentificationRemarks |
| 87 | 95 |
IdentificationVerificationStatus,IdentificationVerificationStatus |
| 96 |
Detby,IdentifiedBy, |
|
| 88 | 97 |
IdentifiedBy,IdentifiedBy |
| 89 | 98 |
IdentifiedDate,IdentifiedDate |
| 90 | 99 |
IndividualCount,IndividualCount |
| ... | ... | |
| 132 | 141 |
MinimumElevation,MinimumElevation |
| 133 | 142 |
MinimumElevationInMeters,MinimumElevationInMeters |
| 134 | 143 |
Month,Month |
| 144 |
Collmm,MonthCollected, |
|
| 135 | 145 |
MonthCollected,MonthCollected |
| 136 | 146 |
MonthIdentified,MonthIdentified |
| 137 | 147 |
Municipality,Municipality |
| ... | ... | |
| 160 | 170 |
Preparations,Preparations |
| 161 | 171 |
PreviousCatalogNumber,PreviousCatalogNumber |
| 162 | 172 |
PreviousIdentifications,PreviousIdentifications |
| 173 |
Number,RecordNumber, |
|
| 163 | 174 |
RecordNumber,RecordNumber |
| 164 | 175 |
RecordedBy,RecordedBy |
| 165 | 176 |
RelatedCatalogItem,RelatedCatalogItem |
| ... | ... | |
| 170 | 181 |
RelationshipRemarks,RelationshipRemarks |
| 171 | 182 |
RelationshipType,RelationshipType |
| 172 | 183 |
Remarks,Remarks |
| 184 |
Phenology,ReproductiveCondition, |
|
| 173 | 185 |
ReproductiveCondition,ReproductiveCondition |
| 174 | 186 |
ResourceID,ResourceID |
| 175 | 187 |
ResourceRelationshipID,ResourceRelationshipID |
| ... | ... | |
| 200 | 212 |
VerbatimElevation,VerbatimElevation |
| 201 | 213 |
VerbatimEventDate,VerbatimEventDate |
| 202 | 214 |
VerbatimLatitude,VerbatimLatitude |
| 215 |
Locnotes,VerbatimLocality, |
|
| 203 | 216 |
VerbatimLocality,VerbatimLocality |
| 204 | 217 |
VerbatimLongitude,VerbatimLongitude |
| 205 | 218 |
VerbatimSRS,VerbatimSRS |
| ... | ... | |
| 207 | 220 |
VernacularName,VernacularName |
| 208 | 221 |
WaterBody,WaterBody |
| 209 | 222 |
Year,Year |
| 223 |
Collyy,YearCollected, |
|
| 210 | 224 |
YearCollected,YearCollected |
| 225 |
Detyy,YearIdentified, |
|
| 211 | 226 |
YearIdentified,YearIdentified |
| 212 | 227 |
acceptedNameUsage,acceptedNameUsage |
| 213 | 228 |
acceptedNameUsageID,acceptedNameUsageID |
| ... | ... | |
| 419 | 434 |
year,year |
| 420 | 435 |
yearCollected,yearCollected |
| 421 | 436 |
yearIdentified,yearIdentified |
| 422 |
Addcoll,, |
|
| 423 |
Alt,, |
|
| 424 |
Alt2,, |
|
| 425 |
Barcode,, |
|
| 426 |
Colldd,, |
|
| 427 |
Collmm,, |
|
| 428 |
Collyy,, |
|
| 437 |
Alt,,What is this? |
|
| 438 |
Alt2,,What is this? |
|
| 429 | 439 |
Coorsyst,, |
| 430 |
DateInfo,, |
|
| 431 |
Detby,, |
|
| 432 |
Detyy,, |
|
| 440 |
DateInfo,,Not used |
|
| 433 | 441 |
EW,, |
| 434 |
Ecology,, |
|
| 435 | 442 |
Gazetteer,, |
| 436 |
ID,, |
|
| 437 |
Lat,, |
|
| 438 |
Locnotes,, |
|
| 439 |
Long,, |
|
| 440 | 443 |
Majorarea,, |
| 441 | 444 |
NS,, |
| 442 | 445 |
Newgazett,, |
| 443 |
Number,, |
|
| 444 |
Phenology,, |
|
| 445 |
Prefix,, |
|
| 446 |
Suffix,, |
|
| 447 |
cf,, |
|
| 446 |
Prefix,,Not used |
|
| 447 |
Suffix,,Not used |
|
| inputs/U/maps/VegBIEN.specimens.csv | ||
|---|---|---|
| 17 | 17 |
country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationdetermination/namedplace_id/_simplifyPath:[next=""parent_id/namedplace"",require=placename]/path/_forEach:[in:[county,stateProvince,],do=""namedplace[rank=_val]/parent_id""]/namedplace[rank=country]/placename",Brad: Required; reject record if this field NULL,63 |
| 18 | 18 |
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
| 19 | 19 |
locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/1,,68 |
| 20 |
Locnotes,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
|
| 20 | 21 |
VerbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
| 21 | 22 |
verbatimLocality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/2,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69 |
| 23 |
Ecology,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
|
| 22 | 24 |
Habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 23 | 25 |
habitat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52 |
| 24 | 26 |
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{./{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value/_rangeStart/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/2/_rangeEnd/value}",,71
|
| ... | ... | |
| 30 | 32 |
maximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
|
| 31 | 33 |
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max/_units:[default=m,to=m,to=]/value,elevationrange/_range/to/_units:[default=m,to=m,to=]/value/_alt/1}",,72
|
| 32 | 34 |
DecimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 35 |
Lat,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
|
| 33 | 36 |
decimalLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/1/_nullIf:[null=0,type=float]/value",,85
|
| 34 | 37 |
Latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 35 | 38 |
VerbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 36 | 39 |
latitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 37 | 40 |
verbatimLatitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}/_alt/2/_nullIf:[null=0,type=float]/value",,81
|
| 38 | 41 |
DecimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 42 |
Long,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
|
| 39 | 43 |
decimalLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/1/_nullIf:[null=0,type=float]/value",,86
|
| 40 | 44 |
Longitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| 41 | 45 |
VerbatimLongitude,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}/_alt/2/_nullIf:[null=0,type=float]/value",,82
|
| ... | ... | |
| 51 | 55 |
minimumDepthInMeters,"/*_id/taxonoccurrence/*_id/locationevent/waterdepth/_avg/min/_units:[default=m,to=m,to=]/value",,74 |
| 52 | 56 |
EventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 53 | 57 |
eventDate/_alt,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt",Allow datasource to define custom eventDate mappings that don't pass through the default eventDate mapping,44
|
| 58 |
Colldd,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
|
| 54 | 59 |
DayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 55 | 60 |
dayCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,44
|
| 61 |
Collmm,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
|
| 56 | 62 |
MonthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 57 | 63 |
monthCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,44
|
| 64 |
Collyy,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
|
| 58 | 65 |
YearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 59 | 66 |
yearCollected,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,44
|
| 60 | 67 |
EventDate,"/*_id/taxonoccurrence/*_id/locationevent/{obsstartdate/_*/date/_dateRangeStart,obsenddate/_*/date/_dateRangeEnd}/value/_alt/2",,44
|
| ... | ... | |
| 67 | 74 |
dayIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/day/_nullIf:[null=0,type=float]/value",,120 |
| 68 | 75 |
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
| 69 | 76 |
monthIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/month/_nullIf:[null=0,type=float]/value",,120 |
| 77 |
Detyy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
|
| 70 | 78 |
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
| 71 | 79 |
yearIdentified,"/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/1/_date/year/_nullIf:[null=0,type=float]/value",,120 |
| 72 | 80 |
DateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
| 73 | 81 |
dateIdentified,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/2,,120 |
| 74 | 82 |
IdentifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
| 75 | 83 |
identifiedDate,/*_id/taxonoccurrence/taxondetermination[role=identifier]/determinationdate/_*/date/_dateRangeStart/value/_alt/3,,120 |
| 84 |
Detby,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
|
| 76 | 85 |
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 77 | 86 |
identifiedBy,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
|
| 78 | 87 |
ScientificName,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[],do=""plantname[rank=_val]/parent_id""]/plantname[rank=binomial]/plantname","Brad: Bob, Nick, please is this mapping OK?",134 |
| ... | ... | |
| 101 | 110 |
phylum,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=subkingdom]/plantname",,143 |
| 102 | 111 |
Kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
| 103 | 112 |
kingdom,"/*_id/taxonoccurrence/taxondetermination[role=identifier]:[isoriginal=true,iscurrent=true]/*_id/plantconcept/plantname_id/_simplifyPath:[next=""parent_id/plantname"",require=plantname]/path/_forEach:[in:[binomial,authority,subspecies,species,genus,family,order,class,subkingdom,],do=""plantname[rank=_val]/parent_id""]/plantname[rank=kingdom]/plantname",,142 |
| 104 |
Collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
|
| 105 | 113 |
RecordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 106 | 114 |
collector,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 107 | 115 |
recordedBy,/*_id/taxonoccurrence/verbatimcollectorname,,23 |
| 116 |
Collector,/*_id/taxonoccurrence/verbatimcollectorname/_merge/1,,23 |
|
| 117 |
Addcoll,/*_id/taxonoccurrence/verbatimcollectorname/_merge/2,,23 |
|
| 108 | 118 |
CollectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 109 | 119 |
collectionCode,/collectioncode_dwc,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12 |
| 110 | 120 |
Sex,"/definedvalue[*_id/userdefined[tablename=specimenreplicate,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26 |
| ... | ... | |
| 117 | 127 |
TaxonRemarks,/description/_merge/2,,158 |
| 118 | 128 |
remarks,/description/_merge/2,,158 |
| 119 | 129 |
taxonRemarks,/description/_merge/2,,158 |
| 130 |
Barcode,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
|
| 120 | 131 |
CatalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 121 | 132 |
catalogNumber,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/catalognumber_dwc","Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20 |
| 122 | 133 |
GlobalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 134 |
ID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
|
| 123 | 135 |
OccurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 124 | 136 |
globalUniqueIdentifier,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 125 | 137 |
occurrenceID,":[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel,*_id/taxonoccurrence]/sourceaccessioncode","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19 |
| 126 | 138 |
CollectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 139 |
Number,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
|
| 127 | 140 |
RecordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 128 | 141 |
collectorNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| 129 | 142 |
recordNumber,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/collectionnumber/_alt/1,,22 |
| ... | ... | |
| 135 | 148 |
institutionID,:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,,8 |
| 136 | 149 |
AcceptedNameUsage,,,135 |
| 137 | 150 |
AcceptedNameUsageID,,,128 |
| 138 |
Addcoll,, |
|
| 139 |
Alt,, |
|
| 140 |
Alt2,, |
|
| 151 |
Alt,,What is this? |
|
| 152 |
Alt2,,What is this? |
|
| 141 | 153 |
AssociatedMedia,,,36 |
| 142 | 154 |
AssociatedOccurrences,,,38 |
| 143 | 155 |
AssociatedReferences,,,37 |
| 144 | 156 |
AssociatedSequences,,,39 |
| 145 | 157 |
AssociatedTaxa,,,40 |
| 146 |
Barcode,, |
|
| 147 | 158 |
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15 |
| 148 | 159 |
Bed,,,117 |
| 149 | 160 |
Behavior,,,29 |
| 150 |
Colldd,, |
|
| 151 |
Collmm,, |
|
| 152 |
Collyy,, |
|
| 153 | 161 |
Continent,,Brad: OMIT,59 |
| 154 | 162 |
ContinentOcean,,Brad: OMIT,59 |
| 155 | 163 |
Coorsyst,, |
| ... | ... | |
| 157 | 165 |
DataGeneralizations,,,17 |
| 158 | 166 |
DatasetID,,,10 |
| 159 | 167 |
DatasetName,,,13 |
| 160 |
DateInfo,, |
|
| 168 |
DateInfo,,Not used
|
|
| 161 | 169 |
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1 |
| 162 | 170 |
Day,,Brad: OMIT,50 |
| 163 | 171 |
Dcterms:accessRights,,,5 |
| ... | ... | |
| 168 | 176 |
Dcterms:rights,,,3 |
| 169 | 177 |
Dcterms:rightsHolder,,,4 |
| 170 | 178 |
Dcterms:type,,,0 |
| 171 |
Detby,, |
|
| 172 |
Detyy,, |
|
| 173 | 179 |
Disposition,,,33 |
| 174 | 180 |
DynamicProperties,,,18 |
| 175 | 181 |
EW,, |
| ... | ... | |
| 178 | 184 |
EarliestEpochOrLowestSeries,,,107 |
| 179 | 185 |
EarliestEraOrLowestErathem,,,103 |
| 180 | 186 |
EarliestPeriodOrLowestSystem,,,105 |
| 181 |
Ecology,, |
|
| 182 | 187 |
EndDayOfYear,,,47 |
| 183 | 188 |
EstablishmentMeans,,,30 |
| 184 | 189 |
EventID,,,41 |
| ... | ... | |
| 201 | 206 |
HigherGeography,,,58 |
| 202 | 207 |
HigherGeographyID,,,57 |
| 203 | 208 |
HighestBiostratigraphicZone,,,112 |
| 204 |
ID,, |
|
| 205 | 209 |
IdentificationID,,,118 |
| 206 | 210 |
IdentificationQualifier,,,124 |
| 207 | 211 |
IdentificationReferences,,,121 |
| ... | ... | |
| 214 | 218 |
Island,,,62 |
| 215 | 219 |
IslandGroup,,,61 |
| 216 | 220 |
JulianDay,,Brad: OMIT,50 |
| 217 |
Lat,, |
|
| 218 | 221 |
LatestAgeOrHighestStage,,,110 |
| 219 | 222 |
LatestEonOrHighestEonothem,,,102 |
| 220 | 223 |
LatestEpochOrHighestSeries,,,108 |
| ... | ... | |
| 225 | 228 |
LocationAccordingTo,,,78 |
| 226 | 229 |
LocationID,,,56 |
| 227 | 230 |
LocationRemarks,,,79 |
| 228 |
Locnotes,, |
|
| 229 |
Long,, |
|
| 230 | 231 |
LowestBiostratigraphicZone,,,111 |
| 231 | 232 |
Majorarea,, |
| 232 | 233 |
MaximumDistanceAboveSurfaceInMeters,,,77 |
| ... | ... | |
| 252 | 253 |
Newgazett,, |
| 253 | 254 |
NomenclaturalCode,,,155 |
| 254 | 255 |
NomenclaturalStatus,,,157 |
| 255 |
Number,, |
|
| 256 | 256 |
OccurrenceRemarks,,,21 |
| 257 | 257 |
OccurrenceStatus,,,31 |
| 258 | 258 |
OriginalNameUsage,,,137 |
| ... | ... | |
| 261 | 261 |
OwnerInstitutionCode,,,14 |
| 262 | 262 |
ParentNameUsage,,,136 |
| 263 | 263 |
ParentNameUsageID,,,129 |
| 264 |
Phenology,, |
|
| 264 |
Phenology,,,28
|
|
| 265 | 265 |
PointRadiusSpatialFit,,,90 |
| 266 |
Prefix,, |
|
| 266 |
Prefix,,Not used
|
|
| 267 | 267 |
Preparation,,Brad: OMIT,32 |
| 268 | 268 |
PreparationType,,Brad: OMIT,32 |
| 269 | 269 |
Preparations,,Brad: OMIT,32 |
| ... | ... | |
| 284 | 284 |
ScientificNameID,,,127 |
| 285 | 285 |
StartDayOfYear,,,46 |
| 286 | 286 |
Subgenus,,,148 |
| 287 |
Suffix,, |
|
| 287 |
Suffix,,Not used
|
|
| 288 | 288 |
TaxonConceptID,,,133 |
| 289 | 289 |
TaxonID,,,126 |
| 290 | 290 |
TaxonRank,,,151 |
| ... | ... | |
| 311 | 311 |
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15 |
| 312 | 312 |
bed,,,117 |
| 313 | 313 |
behavior,,,29 |
| 314 |
cf,, |
|
| 314 |
cf,,,124
|
|
| 315 | 315 |
continent,,Brad: OMIT,59 |
| 316 | 316 |
continentOcean,,Brad: OMIT,59 |
| 317 | 317 |
countryCode,,,64 |
Also available in: Unified diff
inputs/U/maps/DwC.specimens.csv: Mapped most of the remaining fields