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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  bin 1619 almost 13 years Aaron Marcuse-Kubitza count_error_rows: Allow input to be specified a...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 1620 almost 13 years Aaron Marcuse-Kubitza input.Makefile: verify: Added reverify option, ...
  lib 1624 almost 13 years Aaron Marcuse-Kubitza xml_func.py: _replace: Strip whitespace from th...
  mappings 1608 almost 13 years Aaron Marcuse-Kubitza mappings/VegX-VegBIEN.organisms.csv: slopeaspec...
  schemas 1589 almost 13 years Aaron Marcuse-Kubitza schemas/postgresql.nimoy.conf: Increased work_m...
  to_do 811 almost 13 years Aaron Marcuse-Kubitza Added to_do/milestones.doc
Makefile 7.5 KB 1600 almost 13 years Aaron Marcuse-Kubitza main Makefile: Added instructions to install PH...
README.TXT 1.8 KB 1556 almost 13 years Aaron Marcuse-Kubitza README.TXT: Added instructions how to stop all ...
map 867 Bytes 1299 almost 13 years Aaron Marcuse-Kubitza map: On nimoy, use bien2_staging unless otherwi...

Latest revisions

# Date Author Comment
1624 03/26/2012 06:19 PM Aaron Marcuse-Kubitza

xml_func.py: _replace: Strip whitespace from the returned string

1623 03/26/2012 06:09 PM Aaron Marcuse-Kubitza

csvs.py: Added TsvReader to support TSV quirks. Added reader_class(). reader_and_header(): Use reader_class() to automatically use TsvReader instead of csv.reader for TSVs. Added is_tsv() and use it where `dialect.delimiter == '\t'` was used.

1622 03/26/2012 06:06 PM Aaron Marcuse-Kubitza

strings.py: Added extract_line_ending() and remove_line_ending(). ensure_newl(): Use new remove_line_ending(). Moved Parsing section to top since it is used by the other sections.

1621 03/26/2012 04:40 PM Aaron Marcuse-Kubitza

csvs.py: stream_info(): Set dialect.quoting = csv.QUOTE_NONE for TSVs because they usually don't quote fields. Factored dialect detecting code into new function sniff().

1620 03/26/2012 03:45 PM Aaron Marcuse-Kubitza

input.Makefile: verify: Added reverify option, which can be turned off to prevent regenerating the verify/%.out file from the DB (which can be time-consuming), and instead just diff verify/%.out with verify/%.ref

1619 03/24/2012 10:31 PM Aaron Marcuse-Kubitza

count_error_rows: Allow input to be specified as last arg(s) in addition to as stdin

1618 03/24/2012 10:30 PM Aaron Marcuse-Kubitza

exc.py: ExPercentTracker: When diplaying fraction of iters that had errors, don't duplicate the iter_text ("row", etc.) in the numerator

1617 03/24/2012 10:27 PM Aaron Marcuse-Kubitza

bin/map: Use new ExPercentTracker iter_num tracking to track distinct row #s with errors

1616 03/24/2012 10:27 PM Aaron Marcuse-Kubitza

exc.py: ExPercentTracker: Track iter_nums of Exceptions as well, to distinguish how many distinct iters had errors

1615 03/24/2012 10:10 PM Aaron Marcuse-Kubitza

Added bin/count_error_rows to count distinct rows with errors in `map` error messages

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