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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  bin 1619 almost 13 years Aaron Marcuse-Kubitza count_error_rows: Allow input to be specified a...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 1651 almost 13 years Aaron Marcuse-Kubitza inputs/REMIB/src/nodes.make: Don't abort entire...
  lib 1648 almost 13 years Aaron Marcuse-Kubitza profiling.py ItersProfiler, exc.py ExPercentTra...
  mappings 1625 almost 13 years Aaron Marcuse-Kubitza mappings/DwC2-VegBIEN.specimens.csv: minimumEle...
  schemas 1656 almost 13 years Aaron Marcuse-Kubitza schemas/postgresql.conf: Expressed shared_buffe...
  to_do 811 almost 13 years Aaron Marcuse-Kubitza Added to_do/milestones.doc
Makefile 7.58 KB 1628 almost 13 years Aaron Marcuse-Kubitza Makefiles: Let subdir's Makefile decide whether...
README.TXT 1.8 KB 1556 almost 13 years Aaron Marcuse-Kubitza README.TXT: Added instructions how to stop all ...
map 867 Bytes 1299 almost 13 years Aaron Marcuse-Kubitza map: On nimoy, use bien2_staging unless otherwi...

Latest revisions

# Date Author Comment
1656 03/27/2012 07:16 PM Aaron Marcuse-Kubitza

schemas/postgresql.conf: Expressed shared_buffers in MB, since decimal GB doesn't seem to work anymore on 9.1

1655 03/27/2012 07:14 PM Aaron Marcuse-Kubitza

schemas/postgresql.conf: Decreased shared_buffers to 3.9GB, slightly less than SHMMAX

1654 03/27/2012 07:11 PM Aaron Marcuse-Kubitza

schemas/postgresql.conf: Optimized again using same changes as were applied to 8.4 version

1653 03/27/2012 07:10 PM Aaron Marcuse-Kubitza

schemas/postgresql.conf: Replaced with original 9.1 version

1652 03/27/2012 07:03 PM Aaron Marcuse-Kubitza

schemas/postgresql.conf: Optimized using analogous settings as postgresql.nimoy.conf

1651 03/27/2012 06:43 PM Aaron Marcuse-Kubitza

inputs/REMIB/src/nodes.make: Don't abort entire import on empty response, because an empty response is also returned for nodes that are temporarily down, not just nodes that don't exist (assumed to be after the highest numbered node). Instead, stop import after 150 nodes if user did not specify an explicit # nodes.

1650 03/27/2012 05:50 PM Aaron Marcuse-Kubitza

inputs/REMIB/src/nodes.make: Abort prefix on empty response using break, rather than just done = True, to avoid running any more code except the finally block. Moved metadata row validation outside metadata row retrieval try-except block.

1649 03/27/2012 05:41 PM Aaron Marcuse-Kubitza

inputs/REMIB/src/nodes.make: If a read times out, abort the entire node rather than just the prefix to avoid waiting 20 sec for each of 26*26 prefixes

1648 03/27/2012 05:40 PM Aaron Marcuse-Kubitza

profiling.py ItersProfiler, exc.py ExPercentTracker: Only output fraction of rows with errors if self.iter_ct > 0, to avoid divide-by-zero error

1647 03/27/2012 04:55 PM Aaron Marcuse-Kubitza

inputs/REMIB/src/nodes.make: Fixed bug where row count was output in the middle of the row processing code, instead of after the first row is processed and the row count incremented. This removes "Processed 0 row(s)" messages at the beginning of every prefix.

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