Revision 167
Added by Aaron Marcuse-Kubitza about 13 years ago
| scripts/test/accepted_output/SALVIAS_db.organisms.VegX.xml | ||
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<?xml version="1.0" ?> |
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<VegX> |
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<individualOrganismObservations> |
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<individualOrganismObservation id="1">
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<individualOrganismObservation id="0">
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<individualOrganismID>0</individualOrganismID> |
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<plotObservationID>0</plotObservationID> |
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<simpleUserdefined> |
| ... | ... | |
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<value>1</value> |
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</simpleUserdefined> |
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</individualOrganismObservation> |
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<individualOrganismObservation id="2">
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<individualOrganismObservation id="1">
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<individualOrganismID>1</individualOrganismID> |
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<plotObservationID>1</plotObservationID> |
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<simpleUserdefined> |
| scripts/test/accepted_output/SALVIAS_db.organisms.VegBank.xml | ||
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| 1 | 1 |
<?xml version="1.0" ?> |
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<VegBank> |
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<taxonObservation id="1">
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<taxonObservation id="0">
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<observation_ID> |
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<observation> |
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<plot_ID> |
| ... | ... | |
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</party_ID> |
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</taxonInterpretation> |
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</taxonObservation> |
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<taxonObservation id="2">
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<taxonObservation id="1">
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<observation_ID> |
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<observation> |
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<plot_ID> |
| scripts/map | ||
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| 90 | 90 |
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in_db = sql.connect(in_db_config) |
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in_pkeys = {}
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for row in sql.rows(db_xml.get(in_db, in_root_xml, in_pkeys,
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limit)):
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row_id, = row
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row_id = str(row_id)
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for row_idx, row in enumerate(sql.rows(db_xml.get(in_db,
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in_root_xml, in_pkeys, limit))):
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row_id = str(row_idx)
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pkey, = row
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for in_, out in mappings: |
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value = metadata_value(in_) |
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if value == None: |
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in_ = in_.cloneNode(True) # don't modify orig value! |
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xml_dom.set_id(xpath.get(in_, in_root), row_id)
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xml_dom.set_id(xpath.get(in_, in_root), pkey)
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value = sql.value_or_none(db_xml.get(in_db, in_, |
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in_pkeys)) |
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if value != None: |
Also available in: Unified diff
map: Use row's index instead of pkey as ID in XML output