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Revision 1724

Added by Aaron Marcuse-Kubitza almost 13 years ago

VegX-VegBIEN.organisms.csv: Changed plotObservation user-defined field plotMethodology to /simpleUserdefined[name=method]/*ID/method/name

View differences:

inputs/SALVIAS-CSV/test/VegX.plots.xml.ref
10 10 
            </simpleUserdefined>
11 11 
            <plotUniqueIdentifierID>0</plotUniqueIdentifierID>
12 12 
            <simpleUserdefined>
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                <name>plotMethodology</name>
14 
                <value>1 ha, stems &gt;= 10 cm dbh</value>
13 
                <name>method</name>
14 
                <methodID><method><name>1 ha, stems &gt;= 10 cm dbh</name></method></methodID>
15 15 
            </simpleUserdefined>
16 16 
            <obsStartDate>1990-11-16</obsStartDate>
17 17 
        </plotObservation>
......
24 24 
            </simpleUserdefined>
25 25 
            <plotUniqueIdentifierID>1</plotUniqueIdentifierID>
26 26 
            <simpleUserdefined>
27 
                <name>plotMethodology</name>
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                <value>1 ha, stems &gt;= 10 cm dbh</value>
27 
                <name>method</name>
28 
                <methodID><method><name>1 ha, stems &gt;= 10 cm dbh</name></method></methodID>
29 29 
            </simpleUserdefined>
30 30 
            <obsStartDate>1990-11-16</obsStartDate>
31 31 
        </plotObservation>
inputs/SALVIAS-CSV/maps/VegX.plots.csv
36 36 
"holdridge_life_zone","->/*s/communityDetermination[*ID]/*s/communityConcept/commonName",
37 37 
"life_zone_code","->/*s/communityDetermination[*ID]/*s/communityConcept/name",
38 38 
"observation_type",,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
39 
"plot_methodology","/simpleUserdefined[name=plotMethodology]/value",
39 
"plot_methodology","/simpleUserdefined[name=method]/*ID/method/name",
40 40 
"plot_area_ha","/*UniqueIdentifierID->/*s/plot/area","Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 41 
"recensused",,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
42 42 
"date_start","/obsStartDate/_*/date",
inputs/SALVIAS-CSV/maps/VegX.plots.full.csv
36 36 
"holdridge_life_zone","->/*s/communityDetermination[*ID]/*s/communityConcept/commonName",
37 37 
"life_zone_code","->/*s/communityDetermination[*ID]/*s/communityConcept/name",
38 38 
"observation_type",,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
39 
"plot_methodology","/simpleUserdefined[name=plotMethodology]/value",
39 
"plot_methodology","/simpleUserdefined[name=method]/*ID/method/name",
40 40 
"plot_area_ha","/*UniqueIdentifierID->/*s/plot/area","Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 41 
"recensused",,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
42 42 
"date_start","/obsStartDate/_*/date",
inputs/SALVIAS/test/VegX.plots.xml.ref
14 14 
                <value>2500.0</value>
15 15 
            </simpleUserdefined>
16 16 
            <simpleUserdefined>
17 
                <name>plotMethodology</name>
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                <value>0.1 ha  transect, stems &gt;= 2.5 cm dbh</value>
17 
                <name>method</name>
18 
                <methodID><method><name>0.1 ha  transect, stems &gt;= 2.5 cm dbh</name></method></methodID>
19 19 
            </simpleUserdefined>
20 20 
        </plotObservation>
21 21 
        <plotObservation id="1">
......
32 32 
            </simpleUserdefined>
33 33 
            <temperature>7.4</temperature>
34 34 
            <simpleUserdefined>
35 
                <name>plotMethodology</name>
36 
                <value>0.1 ha  transect, stems &gt;= 2.5 cm dbh</value>
35 
                <name>method</name>
36 
                <methodID><method><name>0.1 ha  transect, stems &gt;= 2.5 cm dbh</name></method></methodID>
37 37 
            </simpleUserdefined>
38 38 
        </plotObservation>
39 39 
    </plotObservations>
inputs/SALVIAS/maps/VegX.plots.csv
54 54 
"Habitat",,
55 55 
"life_zone_code","->/*s/communityDetermination[*ID]/*s/communityConcept/commonName",
56 56 
"life_zone","->/*s/communityDetermination[*ID]/*s/communityConcept/name",
57 
"PlotMethod","/simpleUserdefined[name=plotMethodology]/value",
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"PlotMethod","/simpleUserdefined[name=method]/*ID/method/name",
58 58 
"MethodCode",,
59 59 
"plot_area_ha","/*UniqueIdentifierID->/*s/plot/area","Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60 60 
"recensused",,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
inputs/SALVIAS/maps/VegX.plots.full.csv
54 54 
"Habitat",,
55 55 
"life_zone_code","->/*s/communityDetermination[*ID]/*s/communityConcept/commonName",
56 56 
"life_zone","->/*s/communityDetermination[*ID]/*s/communityConcept/name",
57 
"PlotMethod","/simpleUserdefined[name=plotMethodology]/value",
57 
"PlotMethod","/simpleUserdefined[name=method]/*ID/method/name",
58 58 
"MethodCode",,
59 59 
"plot_area_ha","/*UniqueIdentifierID->/*s/plot/area","Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60 60 
"recensused",,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
mappings/VegX-VegBIEN.plots.csv
14 14 
/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
15 15 
/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude,"/*_id/location/{locationdetermination/latitude,centerlatitude}",
16 16 
/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude,"/*_id/location/{locationdetermination/longitude,centerlongitude}",
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/simpleUserdefined[name=plotMethodology]/value,/*_id/method/name,
17 
/simpleUserdefined[name=method]/*ID/method/name,/*_id/method/name,
18 18 
/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,
19 19 
/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname,
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->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
mappings/VegX-VegBIEN.organisms.csv
14 14 
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units:[default=m,to=m,to=]/value",
15 15 
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
16 16 
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/DecimalLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
17 
/*ID->/*s/plotObservation/simpleUserdefined[name=plotMethodology]/value,/*_id/locationevent/*_id/method/name,
17 
/*ID->/*s/plotObservation/simpleUserdefined[name=method]/*ID/method/name,/*_id/locationevent/*_id/method/name,
18 18 
/*ID->/*s/plotObservation/*ID->/*s/project/personnel[role=metadataProvider]/organizationName,/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/datasource_id/party/organizationname/_alt/1,
19 19 
/*ID->/*s/plotObservation/*ID->/*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,/*_id/locationevent/*_id/project:[datasource_id/party/organizationname/_alt/2=$/_ignore/inLabel]/projectname,
20 20 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
mappings/for_review/VegX-VegBIEN.plots.csv
14 14 
//geospatial/minimumElevationInMeters,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value",
15 15 
//geospatial/DecimalLatitude,"/*_id/location/{locationdetermination/latitude,centerlatitude}",
16 16 
//geospatial/DecimalLongitude,"/*_id/location/{locationdetermination/longitude,centerlongitude}",
17 
/simpleUserdefined[name=plotMethodology]/value,//method/name,
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/simpleUserdefined[name=method]/*ID/method/name,//method/name,
18 18 
//project/personnel[role=metadataProvider]/organizationName,//party/organizationname/_alt/1,
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//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//project/projectname,
20 20 
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname,
mappings/for_review/VegX-VegBIEN.organisms.csv
14 14 
//geospatial/minimumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}/_units/value",
15 15 
//geospatial/DecimalLatitude,"/*_id/locationevent/*_id/location/{locationdetermination/latitude,centerlatitude}",
16 16 
//geospatial/DecimalLongitude,"/*_id/locationevent/*_id/location/{locationdetermination/longitude,centerlongitude}",
17 
//plotObservation/simpleUserdefined[name=plotMethodology]/value,//method/name,
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//plotObservation/simpleUserdefined[name=method]/*ID/method/name,//method/name,
18 18 
//project/personnel[role=metadataProvider]/organizationName,//party/organizationname/_alt/1,
19 19 
//*s/project:[personnel[role=metadataProvider]/organizationName=$/_ignore/inLabel]/title,//project/projectname,
20 20 
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname,

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