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Revision 1728

Added by Aaron Marcuse-Kubitza almost 13 years ago

VegX-VegBIEN.organisms.csv: Renamed abioticObservation user-defined field organicPercent to organic to be consistent with VegBIEN

View differences:

inputs/SALVIAS-CSV/maps/VegX.plots.csv
19 19 
"clay_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value/_units:[default=""%"",to=]/value",
20 20 
"silt_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=siltPercent]/value/_units:[default=""%"",to=]/value",
21 21 
"sand_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=sandPercent]/value/_units:[default=""%"",to=]/value",
22 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value/_units:[default=""%"",to=]/value",
22 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
23 23 
"pH","->/*s/abioticObservation[*ID]/ph","Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
24 24 
"soil_N","->/*s/abioticObservation[*ID]/nitrogen/_units:[default=""%"",to=]/value",
25 25 
"soil_P","->/*s/abioticObservation[*ID]/phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
inputs/SALVIAS-CSV/maps/VegX.plots.full.csv
19 19 
"clay_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=clay]/value/_units:[default=""%"",to=]/value",
20 20 
"silt_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=siltPercent]/value/_units:[default=""%"",to=]/value",
21 21 
"sand_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=sandPercent]/value/_units:[default=""%"",to=]/value",
22 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value/_units:[default=""%"",to=]/value",
22 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
23 23 
"pH","->/*s/abioticObservation[*ID]/ph","Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
24 24 
"soil_N","->/*s/abioticObservation[*ID]/nitrogen/_units:[default=""%"",to=]/value",
25 25 
"soil_P","->/*s/abioticObservation[*ID]/phosphorus/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
inputs/SALVIAS/maps/VegX.plots.csv
44 44 
"soil_base","->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value/_units:[default=""%"",to=]/value",
45 45 
"soil_cation_cap","->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value",
46 46 
"soil_conductivity","->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value",
47 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value/_units:[default=""%"",to=]/value",
47 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
48 48 
"soil_texture","->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value/_units:[default=""%"",to=]/value",
49 49 
"RevisionComments",,
50 50 
"Locality_Description","/*UniqueIdentifierID->/*s/plot/locationNarrative","Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
inputs/SALVIAS/maps/VegX.plots.full.csv
44 44 
"soil_base","->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value/_units:[default=""%"",to=]/value",
45 45 
"soil_cation_cap","->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationExchangeCapacity]/value",
46 46 
"soil_conductivity","->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value",
47 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value/_units:[default=""%"",to=]/value",
47 
"organic_percent","->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value/_units:[default=""%"",to=]/value",
48 48 
"soil_texture","->/*s/abioticObservation[*ID]/simpleUserdefined[name=texture]/value/_units:[default=""%"",to=]/value",
49 49 
"RevisionComments",,
50 50 
"Locality_Description","/*UniqueIdentifierID->/*s/plot/locationNarrative","Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
mappings/VegX-VegBIEN.plots.csv
34 34 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,/soilobs/conductivity,
35 35 
->/*s/abioticObservation[*ID]/magnesium,/soilobs/magnesium,
36 36 
->/*s/abioticObservation[*ID]/nitrogen,/soilobs/nitrogen,
37 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value,/soilobs/organic,
37 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value,/soilobs/organic,
38 38 
->/*s/abioticObservation[*ID]/ph,/soilobs/ph,
39 39 
->/*s/abioticObservation[*ID]/phosphorus,/soilobs/phosphorus,
40 40 
->/*s/abioticObservation[*ID]/pottasium,/soilobs/potassium,
mappings/VegX-VegBIEN.organisms.csv
34 34 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,/*_id/locationevent/soilobs/conductivity,
35 35 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium,/*_id/locationevent/soilobs/magnesium,
36 36 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen,/*_id/locationevent/soilobs/nitrogen,
37 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value,/*_id/locationevent/soilobs/organic,
37 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organic]/value,/*_id/locationevent/soilobs/organic,
38 38 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/ph,/*_id/locationevent/soilobs/ph,
39 39 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus,/*_id/locationevent/soilobs/phosphorus,
40 40 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium,/*_id/locationevent/soilobs/potassium,
mappings/for_review/VegX-VegBIEN.plots.csv
34 34 
//*s/abioticObservation/simpleUserdefined[name=conductivity]/value,//soilobs/conductivity,
35 35 
//*s/abioticObservation/magnesium,//soilobs/magnesium,
36 36 
//*s/abioticObservation/nitrogen,//soilobs/nitrogen,
37 
//*s/abioticObservation/simpleUserdefined[name=organicPercent]/value,//soilobs/organic,
37 
//*s/abioticObservation/simpleUserdefined[name=organic]/value,//soilobs/organic,
38 38 
//*s/abioticObservation/ph,//soilobs/ph,
39 39 
//*s/abioticObservation/phosphorus,//soilobs/phosphorus,
40 40 
//*s/abioticObservation/pottasium,//soilobs/potassium,
mappings/for_review/VegX-VegBIEN.organisms.csv
34 34 
//*s/abioticObservation/simpleUserdefined[name=conductivity]/value,//soilobs/conductivity,
35 35 
//*s/abioticObservation/magnesium,//soilobs/magnesium,
36 36 
//*s/abioticObservation/nitrogen,//soilobs/nitrogen,
37 
//*s/abioticObservation/simpleUserdefined[name=organicPercent]/value,//soilobs/organic,
37 
//*s/abioticObservation/simpleUserdefined[name=organic]/value,//soilobs/organic,
38 38 
//*s/abioticObservation/ph,//soilobs/ph,
39 39 
//*s/abioticObservation/phosphorus,//soilobs/phosphorus,
40 40 
//*s/abioticObservation/pottasium,//soilobs/potassium,

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