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Revision 1732

VegX-VegBIEN.organisms.csv: Renamed individualOrganismObservation user-defined field coverPercent to cover to be consistent with VegBIEN

View differences:

inputs/SALVIAS-CSV/maps/VegX.organisms.csv
30 30
"comments",,"Brad: OMIT"
31 31
"habit","/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
32 32
"no_of_individuals","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
33
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
33
"cover_percent","/simpleUserdefined[name=cover]/value",
34 34
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
35 35
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
36 36
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv
30 30
"comments",,"Brad: OMIT"
31 31
"habit","/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
32 32
"no_of_individuals","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
33
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
33
"cover_percent","/simpleUserdefined[name=cover]/value",
34 34
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
35 35
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
36 36
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
inputs/SALVIAS/maps/VegX.organisms.csv
43 43
"height_m_commercial",,
44 44
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
45 45
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
46
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
46
"cover_percent","/simpleUserdefined[name=cover]/value",
47 47
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
48 48
"cfaff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
49 49
"other_annotations",,
inputs/SALVIAS/maps/VegX.organisms.full.csv
43 43
"height_m_commercial",,
44 44
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob"
45 45
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
46
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
46
"cover_percent","/simpleUserdefined[name=cover]/value",
47 47
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
48 48
"cfaff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
49 49
"other_annotations",,
mappings/VegX-VegBIEN.organisms.csv
84 84
/relativePlotPosition/relativeX,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition,
85 85
/relativePlotPosition/relativeY,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition,
86 86
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count,
87
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover,
87
/simpleUserdefined[name=cover]/value,/aggregateoccurrence/cover,
88 88
/simpleUserdefined[name=censusNo]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue",
89 89
/simpleUserdefined[name=interceptCm]/value,/aggregateoccurrence/linecover,
90 90
/simpleUserdefined[name=growthForm]/value,/growthform,
mappings/for_review/VegX-VegBIEN.organisms.csv
84 84
//relativePlotPosition/relativeX,//stemobservation/xposition,
85 85
//relativePlotPosition/relativeY,//stemobservation/yposition,
86 86
/simpleUserdefined[name=count]/value,//aggregateoccurrence/count,
87
/simpleUserdefined[name=coverPercent]/value,//aggregateoccurrence/cover,
87
/simpleUserdefined[name=cover]/value,//aggregateoccurrence/cover,
88 88
/simpleUserdefined[name=censusNo]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue",
89 89
/simpleUserdefined[name=interceptCm]/value,//aggregateoccurrence/linecover,
90 90
/simpleUserdefined[name=growthForm]/value,/growthform,

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