Revision 1732
Added by Aaron Marcuse-Kubitza over 12 years ago
inputs/SALVIAS-CSV/maps/VegX.organisms.csv | ||
---|---|---|
30 | 30 |
"comments",,"Brad: OMIT" |
31 | 31 |
"habit","/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
32 | 32 |
"no_of_individuals","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
33 |
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
|
|
33 |
"cover_percent","/simpleUserdefined[name=cover]/value", |
|
34 | 34 |
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
35 | 35 |
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob" |
36 | 36 |
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob" |
inputs/SALVIAS-CSV/maps/VegX.organisms.full.csv | ||
---|---|---|
30 | 30 |
"comments",,"Brad: OMIT" |
31 | 31 |
"habit","/simpleUserdefined[name=growthForm]/value/_map:[./{T,Arbol,palm}=tree,./{H,""Hemiepífito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=]/value","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
32 | 32 |
"no_of_individuals","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
33 |
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
|
|
33 |
"cover_percent","/simpleUserdefined[name=cover]/value", |
|
34 | 34 |
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
35 | 35 |
"height_m","/height","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob" |
36 | 36 |
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob" |
inputs/SALVIAS/maps/VegX.organisms.csv | ||
---|---|---|
43 | 43 |
"height_m_commercial",, |
44 | 44 |
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob" |
45 | 45 |
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
46 |
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
|
|
46 |
"cover_percent","/simpleUserdefined[name=cover]/value", |
|
47 | 47 |
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
48 | 48 |
"cfaff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
49 | 49 |
"other_annotations",, |
inputs/SALVIAS/maps/VegX.organisms.full.csv | ||
---|---|---|
43 | 43 |
"height_m_commercial",, |
44 | 44 |
"ht_first_branch_m","/simpleUserdefined[name=htFirstBranchM]/value","Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob" |
45 | 45 |
"NoInd","/simpleUserdefined[name=count]/value","Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
46 |
"cover_percent","/simpleUserdefined[name=coverPercent]/value",
|
|
46 |
"cover_percent","/simpleUserdefined[name=cover]/value", |
|
47 | 47 |
"intercept_cm","/simpleUserdefined[name=interceptCm]/value","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
48 | 48 |
"cfaff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=binom])/{fit,Name/_name/middle}","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
49 | 49 |
"other_annotations",, |
mappings/VegX-VegBIEN.organisms.csv | ||
---|---|---|
84 | 84 |
/relativePlotPosition/relativeX,/aggregateoccurrence/*_id/plantobservation/stemobservation/xposition, |
85 | 85 |
/relativePlotPosition/relativeY,/aggregateoccurrence/*_id/plantobservation/stemobservation/yposition, |
86 | 86 |
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count, |
87 |
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover,
|
|
87 |
/simpleUserdefined[name=cover]/value,/aggregateoccurrence/cover, |
|
88 | 88 |
/simpleUserdefined[name=censusNo]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
89 | 89 |
/simpleUserdefined[name=interceptCm]/value,/aggregateoccurrence/linecover, |
90 | 90 |
/simpleUserdefined[name=growthForm]/value,/growthform, |
mappings/for_review/VegX-VegBIEN.organisms.csv | ||
---|---|---|
84 | 84 |
//relativePlotPosition/relativeX,//stemobservation/xposition, |
85 | 85 |
//relativePlotPosition/relativeY,//stemobservation/yposition, |
86 | 86 |
/simpleUserdefined[name=count]/value,//aggregateoccurrence/count, |
87 |
/simpleUserdefined[name=coverPercent]/value,//aggregateoccurrence/cover,
|
|
87 |
/simpleUserdefined[name=cover]/value,//aggregateoccurrence/cover, |
|
88 | 88 |
/simpleUserdefined[name=censusNo]/value,"//aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]/definedvalue", |
89 | 89 |
/simpleUserdefined[name=interceptCm]/value,//aggregateoccurrence/linecover, |
90 | 90 |
/simpleUserdefined[name=growthForm]/value,/growthform, |
Also available in: Unified diff
VegX-VegBIEN.organisms.csv: Renamed individualOrganismObservation user-defined field coverPercent to cover to be consistent with VegBIEN